RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, human

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33B-204	ENST00000554660	ABHD16B	Q9H3Z7	469 aa		13.49	□□□□□ -0.25
VPS33B-204	ENST00000554660	OSBPL3	Q9H4L5	887 aa		13.49	□□□□□ -0.25
VPS33B-204	ENST00000554660	NYAP2	Q9P242	653 aa		13.49	□□□□□ -0.25
VPS33B-204	ENST00000554660	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.49	□□□□□ -0.25
VPS33B-204	ENST00000554660	REV3L	O60673	3130 aa		13.48	□□□□□ -0.25
VPS33B-204	ENST00000554660	TLR3	O15455	904 aa	Known RBP	13.48	□□□□□ -0.25
VPS33B-204	ENST00000554660	EPB41L2	O43491	1005 aa	Known RBP	13.48	□□□□□ -0.25
VPS33B-204	ENST00000554660	ZBED4	O75132	1171 aa		13.48	□□□□□ -0.25
VPS33B-204	ENST00000554660	CNTN2	Q02246	1040 aa		13.48	□□□□□ -0.25
VPS33B-204	ENST00000554660	AKNAD1	Q5T1N1	836 aa		13.48	□□□□□ -0.25
VPS33B-204	ENST00000554660	CXCL17	Q6UXB2	119 aa		13.48	□□□□□ -0.25
VPS33B-204	ENST00000554660	KATNBL1	Q9H079	304 aa		13.48	□□□□□ -0.25
VPS33B-204	ENST00000554660	MKNK2	Q9HBH9	465 aa		13.48	□□□□□ -0.25
VPS33B-204	ENST00000554660	SLC38A10	Q9HBR0	1119 aa		13.48	□□□□□ -0.25
VPS33B-204	ENST00000554660	CLIP2	Q9UDT6	1046 aa		13.48	□□□□□ -0.25
VPS33B-204	ENST00000554660	YBX2	Q9Y2T7	364 aa	Known RBP	13.48	□□□□□ -0.25
VPS33B-204	ENST00000554660	DDX49	Q9Y6V7	483 aa	Known RBP	13.48	□□□□□ -0.25
VPS33B-204	ENST00000554660	MYH4	Q9Y623	1939 aa		13.48	□□□□□ -0.25
VPS33B-204	ENST00000554660	ASTN1	O14525	1302 aa		13.47	□□□□□ -0.25
VPS33B-204	ENST00000554660	IGKV6D-41	A0A0C4DH26	115 aa		13.47	□□□□□ -0.25
VPS33B-204	ENST00000554660	MINDY4B	A8MYZ0	360 aa		13.47	□□□□□ -0.25
VPS33B-204	ENST00000554660	RAB11FIP3	O75154	756 aa		13.47	□□□□□ -0.25
VPS33B-204	ENST00000554660	PRDM1	O75626	825 aa		13.47	□□□□□ -0.25
VPS33B-204	ENST00000554660	CD4	P01730	458 aa		13.47	□□□□□ -0.25
VPS33B-204	ENST00000554660	RAB30	Q15771	203 aa		13.47	□□□□□ -0.25
VPS33B-204	ENST00000554660	OTOP2	Q7RTS6	562 aa		13.47	□□□□□ -0.25
VPS33B-204	ENST00000554660	TLK2	Q86UE8	772 aa		13.47	□□□□□ -0.25
VPS33B-204	ENST00000554660	STRBP	Q96SI9	672 aa	Known RBP	13.47	□□□□□ -0.25
VPS33B-204	ENST00000554660	UHRF1	Q96T88	793 aa	Predicted RBP	13.47	□□□□□ -0.25
VPS33B-204	ENST00000554660	HIPK3	Q9H422	1215 aa		13.47	□□□□□ -0.25
VPS33B-204	ENST00000554660	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	13.47	□□□□□ -0.25
VPS33B-204	ENST00000554660	IL23A	Q9NPF7	189 aa		13.47	□□□□□ -0.25
VPS33B-204	ENST00000554660	FBXO40	Q9UH90	709 aa		13.47	□□□□□ -0.25
VPS33B-204	ENST00000554660	MSRA	Q9UJ68	235 aa		13.47	□□□□□ -0.25
VPS33B-204	ENST00000554660	GOLGA6L3	A6NEY3	463 aa		13.46	□□□□□ -0.25
VPS33B-204	ENST00000554660	GSG1L2	A8MUP6	293 aa		13.46	□□□□□ -0.25
VPS33B-204	ENST00000554660	CCL23	P55773	120 aa		13.46	□□□□□ -0.25
VPS33B-204	ENST00000554660	SBK1	Q52WX2	424 aa		13.46	□□□□□ -0.25
VPS33B-204	ENST00000554660	ZSCAN25	Q6NSZ9	544 aa		13.46	□□□□□ -0.25
VPS33B-204	ENST00000554660	NOL8	Q76FK4	1167 aa	Known RBP	13.46	□□□□□ -0.25
VPS33B-204	ENST00000554660	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	13.46	□□□□□ -0.25
VPS33B-204	ENST00000554660	MICALL1	Q8N3F8	863 aa		13.46	□□□□□ -0.25
VPS33B-204	ENST00000554660	CHST13	Q8NET6	341 aa		13.46	□□□□□ -0.25
VPS33B-204	ENST00000554660	HERVK_113	Q902F9	699 aa		13.46	□□□□□ -0.25
VPS33B-204	ENST00000554660	CHMP4C	Q96CF2	233 aa		13.46	□□□□□ -0.25
VPS33B-204	ENST00000554660	CEP95	Q96GE4	821 aa		13.46	□□□□□ -0.25
VPS33B-204	ENST00000554660	FEM1B	Q9UK73	627 aa		13.46	□□□□□ -0.25
VPS33B-204	ENST00000554660	BRPF3	Q9ULD4	1205 aa		13.46	□□□□□ -0.25
VPS33B-204	ENST00000554660	SMARCA5	O60264	1052 aa	Predicted RBP	13.45	□□□□□ -0.26
VPS33B-204	ENST00000554660	TRAK2	O60296	914 aa		13.45	□□□□□ -0.26
VPS33B-204	ENST00000554660	MRE11	P49959	708 aa		13.45	□□□□□ -0.26
VPS33B-204	ENST00000554660	RABGGTB	P53611	331 aa		13.45	□□□□□ -0.26
VPS33B-204	ENST00000554660	OAZ1	P54368	228 aa		13.45	□□□□□ -0.26
VPS33B-204	ENST00000554660	MRPS5	P82675	430 aa	Known RBP	13.45	□□□□□ -0.26
VPS33B-204	ENST00000554660	TNFAIP2	Q03169	654 aa		13.45	□□□□□ -0.26
VPS33B-204	ENST00000554660	FAM133A	Q8N9E0	248 aa		13.45	□□□□□ -0.26
VPS33B-204	ENST00000554660	OSBP2	Q969R2	916 aa		13.45	□□□□□ -0.26
VPS33B-204	ENST00000554660	NECAB3	Q96P71	396 aa	Predicted RBP	13.45	□□□□□ -0.26
VPS33B-204	ENST00000554660	WNT8A	Q9H1J5	351 aa		13.45	□□□□□ -0.26
VPS33B-204	ENST00000554660	MTIF3	Q9H2K0	278 aa	Known RBP	13.45	□□□□□ -0.26
VPS33B-204	ENST00000554660	ACAD9	Q9H845	621 aa		13.45	□□□□□ -0.26
VPS33B-204	ENST00000554660	SLC28A3	Q9HAS3	691 aa		13.45	□□□□□ -0.26
VPS33B-204	ENST00000554660	A1CF	Q9NQ94	594 aa	Known RBP	13.45	□□□□□ -0.26
VPS33B-204	ENST00000554660	GRIN2D	O15399	1336 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	SOWAHB	A6NEL2	793 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	B4GALT4	O60513	344 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	REC8	O95072	547 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	FGB	P02675	491 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	GSPT1	P15170	499 aa	Known RBP	13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	MYOG	P15173	224 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	TDO2	P48775	406 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	PSMC6	P62333	389 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	NKX3-2	P78367	333 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	ITGA7	Q13683	1181 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	TMEM63B	Q5T3F8	832 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	TSHZ3	Q63HK5	1081 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	PPP2R2D	Q66LE6	453 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	FBXO16	Q8IX29	292 aa	Predicted RBP	13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	SLC43A3	Q8NBI5	491 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	GMCL1P1	Q8NEA9	526 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	IL17RA	Q96F46	866 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	AGBL1	Q96MI9	1066 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	TRPV6	Q9H1D0	765 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	RNF146	Q9NTX7	359 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	MTMR4	Q9NYA4	1195 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	GNE	Q9Y223	722 aa	Known RBP	13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	PLIN4	Q96Q06	1357 aa		13.44	□□□□□ -0.26
VPS33B-204	ENST00000554660	TMEM232	C9JQI7	657 aa		13.43	□□□□□ -0.26
VPS33B-204	ENST00000554660		M0R2C6	588 aa		13.43	□□□□□ -0.26
VPS33B-204	ENST00000554660	GPAA1	O43292	621 aa		13.43	□□□□□ -0.26
VPS33B-204	ENST00000554660	TTLL1	O95922	423 aa		13.43	□□□□□ -0.26
VPS33B-204	ENST00000554660	BMP3	P12645	472 aa		13.43	□□□□□ -0.26
VPS33B-204	ENST00000554660	SMPD1	P17405	629 aa		13.43	□□□□□ -0.26
VPS33B-204	ENST00000554660	IK	Q13123	557 aa	Predicted RBP	13.43	□□□□□ -0.26
VPS33B-204	ENST00000554660	FSCN1	Q16658	493 aa	Known RBP	13.43	□□□□□ -0.26
VPS33B-204	ENST00000554660	SLFN13	Q68D06	897 aa		13.43	□□□□□ -0.26
VPS33B-204	ENST00000554660	GIMAP6	Q6P9H5	292 aa		13.43	□□□□□ -0.26
VPS33B-204	ENST00000554660	EEPD1	Q7L9B9	569 aa		13.43	□□□□□ -0.26
VPS33B-204	ENST00000554660	RASGRP2	Q7LDG7	609 aa		13.43	□□□□□ -0.26
VPS33B-204	ENST00000554660	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.43	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms