RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 NOP58Q9Y2X3 529 aaKnown RBP16.62■□□□□ 0.25
PRPF39-204ENST00000553605 Q9Y3F1 56 aa16.62■□□□□ 0.25
PRPF39-204ENST00000553605 ZNF536O15090 1300 aa16.62■□□□□ 0.25
PRPF39-204ENST00000553605 TNKSO95271 1327 aa16.62■□□□□ 0.25
PRPF39-204ENST00000553605 POTEB3A0JP26 581 aa16.61■□□□□ 0.25
PRPF39-204ENST00000553605 ASB14A6NK59 587 aa16.61■□□□□ 0.25
PRPF39-204ENST00000553605 F5H6K3 240 aa16.61■□□□□ 0.25
PRPF39-204ENST00000553605 PRKAB2O43741 272 aa16.61■□□□□ 0.25
PRPF39-204ENST00000553605 KLRC3Q07444 240 aa16.61■□□□□ 0.25
PRPF39-204ENST00000553605 IQSEC1Q6DN90 963 aa16.61■□□□□ 0.25
PRPF39-204ENST00000553605 PTCRAQ6ISU1 281 aaPredicted RBP16.61■□□□□ 0.25
PRPF39-204ENST00000553605 POTEBQ6S5H4 581 aa16.61■□□□□ 0.25
PRPF39-204ENST00000553605 AMOTL1Q8IY63 956 aa16.61■□□□□ 0.25
PRPF39-204ENST00000553605 FAM133AQ8N9E0 248 aa16.61■□□□□ 0.25
PRPF39-204ENST00000553605 KIFC2Q96AC6 838 aa16.61■□□□□ 0.25
PRPF39-204ENST00000553605 SLC38A10Q9HBR0 1119 aa16.61■□□□□ 0.25
PRPF39-204ENST00000553605 SCN5AQ14524 2016 aa16.61■□□□□ 0.25
PRPF39-204ENST00000553605 BRWD1Q9NSI6 2320 aa16.61■□□□□ 0.25
PRPF39-204ENST00000553605 TCRBV5S4A2TA0A5A2 114 aa16.6■□□□□ 0.25
PRPF39-204ENST00000553605 LCHNA4D1U4 455 aa16.6■□□□□ 0.25
PRPF39-204ENST00000553605 GRXCR2A6NFK2 248 aa16.6■□□□□ 0.25
PRPF39-204ENST00000553605 USP17L12C9JPN9 530 aa16.6■□□□□ 0.25
PRPF39-204ENST00000553605 USP17L21D6R901 530 aa16.6■□□□□ 0.25
PRPF39-204ENST00000553605 IQCF3P0C7M6 154 aa16.6■□□□□ 0.25
PRPF39-204ENST00000553605 RETREG2Q8NC44 543 aa16.6■□□□□ 0.25
PRPF39-204ENST00000553605 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.6■□□□□ 0.25
PRPF39-204ENST00000553605 SUGCTQ9HAC7 445 aa16.6■□□□□ 0.25
PRPF39-204ENST00000553605 PDGFCQ9NRA1 345 aa16.6■□□□□ 0.25
PRPF39-204ENST00000553605 COL4A4P53420 1690 aaPredicted RBP16.59■□□□□ 0.25
PRPF39-204ENST00000553605 SOWAHBA6NEL2 793 aa16.59■□□□□ 0.25
PRPF39-204ENST00000553605 IPO8O15397 1037 aaKnown RBP16.59■□□□□ 0.25
PRPF39-204ENST00000553605 BAIAP3O94812 1187 aa16.59■□□□□ 0.25
PRPF39-204ENST00000553605 NDUFB10O96000 172 aa16.59■□□□□ 0.25
PRPF39-204ENST00000553605 TRIM27P14373 513 aa16.59■□□□□ 0.25
PRPF39-204ENST00000553605 KCNJ6P48051 423 aa16.59■□□□□ 0.25
PRPF39-204ENST00000553605 OAZ1P54368 228 aa16.59■□□□□ 0.25
PRPF39-204ENST00000553605 PUS10Q3MIT2 529 aaKnown RBP16.59■□□□□ 0.25
PRPF39-204ENST00000553605 TMEM63BQ5T3F8 832 aa16.59■□□□□ 0.25
PRPF39-204ENST00000553605 TAPT1Q6NXT6 567 aa16.59■□□□□ 0.25
PRPF39-204ENST00000553605 ZBED2Q9BTP6 218 aa16.59■□□□□ 0.25
PRPF39-204ENST00000553605 HOMER2Q9NSB8 354 aa16.59■□□□□ 0.25
PRPF39-204ENST00000553605 PITPNM1O00562 1244 aa16.58■□□□□ 0.24
PRPF39-204ENST00000553605 EEPD1Q7L9B9 569 aa16.58■□□□□ 0.24
PRPF39-204ENST00000553605 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.58■□□□□ 0.24
PRPF39-204ENST00000553605 ACAD9Q9H845 621 aa16.58■□□□□ 0.24
PRPF39-204ENST00000553605 POLR3EQ9NVU0 708 aa16.58■□□□□ 0.24
PRPF39-204ENST00000553605 MTUS1Q9ULD2 1270 aa16.58■□□□□ 0.24
PRPF39-204ENST00000553605 TNNQ9UQP3 1299 aa16.58■□□□□ 0.24
PRPF39-204ENST00000553605 MBD4O95243 580 aa16.57■□□□□ 0.24
PRPF39-204ENST00000553605 FAM47CQ5HY64 1035 aa16.57■□□□□ 0.24
PRPF39-204ENST00000553605 HFE2Q6ZVN8 426 aa16.57■□□□□ 0.24
PRPF39-204ENST00000553605 TMCO2Q7Z6W1 182 aaPredicted RBP16.57■□□□□ 0.24
PRPF39-204ENST00000553605 AACSQ86V21 672 aa16.57■□□□□ 0.24
PRPF39-204ENST00000553605 ANKS1AQ92625 1134 aa16.57■□□□□ 0.24
PRPF39-204ENST00000553605 CLUAP1Q96AJ1 413 aa16.57■□□□□ 0.24
PRPF39-204ENST00000553605 DDRGK1Q96HY6 314 aa16.57■□□□□ 0.24
PRPF39-204ENST00000553605 MFSD14AQ96MC6 490 aa16.57■□□□□ 0.24
PRPF39-204ENST00000553605 PHOX2BQ99453 314 aa16.57■□□□□ 0.24
PRPF39-204ENST00000553605 A1CFQ9NQ94 594 aaKnown RBP16.57■□□□□ 0.24
PRPF39-204ENST00000553605 NYAP2Q9P242 653 aa16.57■□□□□ 0.24
PRPF39-204ENST00000553605 FEM1BQ9UK73 627 aa16.57■□□□□ 0.24
PRPF39-204ENST00000553605 COG6Q9Y2V7 657 aa16.57■□□□□ 0.24
PRPF39-204ENST00000553605 DDX49Q9Y6V7 483 aaKnown RBP16.57■□□□□ 0.24
PRPF39-204ENST00000553605 GOLIM4O00461 696 aa16.56■□□□□ 0.24
PRPF39-204ENST00000553605 ST18O60284 1047 aa16.56■□□□□ 0.24
PRPF39-204ENST00000553605 ERVK-21P61565 698 aa16.56■□□□□ 0.24
PRPF39-204ENST00000553605 PURAQ00577 322 aaKnown RBP16.56■□□□□ 0.24
PRPF39-204ENST00000553605 KIAA1211Q6ZU35 1233 aa16.56■□□□□ 0.24
PRPF39-204ENST00000553605 FBXO16Q8IX29 292 aaPredicted RBP16.56■□□□□ 0.24
PRPF39-204ENST00000553605 TGS1Q96RS0 853 aaKnown RBP16.56■□□□□ 0.24
PRPF39-204ENST00000553605 BAZ2AQ9UIF9 1905 aaKnown RBP16.56■□□□□ 0.24
PRPF39-204ENST00000553605 MYL3P08590 195 aa16.55■□□□□ 0.24
PRPF39-204ENST00000553605 WDR5P61964 334 aaKnown RBP16.55■□□□□ 0.24
PRPF39-204ENST00000553605 BFSP2Q13515 415 aa16.55■□□□□ 0.24
PRPF39-204ENST00000553605 NBPF20Q3BBV1 942 aa16.55■□□□□ 0.24
PRPF39-204ENST00000553605 CTR9Q6PD62 1173 aa16.55■□□□□ 0.24
PRPF39-204ENST00000553605 NEK9Q8TD19 979 aa16.55■□□□□ 0.24
PRPF39-204ENST00000553605 MTG1Q9BT17 334 aaPredicted RBP16.55■□□□□ 0.24
PRPF39-204ENST00000553605 GPHNQ9NQX3 736 aaPredicted RBP16.55■□□□□ 0.24
PRPF39-204ENST00000553605 CLIP2Q9UDT6 1046 aa16.55■□□□□ 0.24
PRPF39-204ENST00000553605 USP34Q70CQ2 3546 aa16.55■□□□□ 0.24
PRPF39-204ENST00000553605 FDX1P10109 184 aa16.54■□□□□ 0.24
PRPF39-204ENST00000553605 CPT1AP50416 773 aa16.54■□□□□ 0.24
PRPF39-204ENST00000553605 SLFNL1Q499Z3 407 aa16.54■□□□□ 0.24
PRPF39-204ENST00000553605 DUSP28Q4G0W2 176 aa16.54■□□□□ 0.24
PRPF39-204ENST00000553605 FRAT1Q92837 279 aaPredicted RBP16.54■□□□□ 0.24
PRPF39-204ENST00000553605 DNAJC2Q99543 621 aaKnown RBP16.54■□□□□ 0.24
PRPF39-204ENST00000553605 RAD9AQ99638 391 aa16.54■□□□□ 0.24
PRPF39-204ENST00000553605 C1orf115Q9H7X2 142 aa16.54■□□□□ 0.24
PRPF39-204ENST00000553605 VTA1Q9NP79 307 aa16.54■□□□□ 0.24
PRPF39-204ENST00000553605 RNF146Q9NTX7 359 aa16.54■□□□□ 0.24
PRPF39-204ENST00000553605 LINC01553A4QN01 128 aa16.53■□□□□ 0.24
PRPF39-204ENST00000553605 H3BQ06 376 aaPredicted RBP16.53■□□□□ 0.24
PRPF39-204ENST00000553605 DEFB103AP81534 67 aa16.53■□□□□ 0.24
PRPF39-204ENST00000553605 LRRFIP1Q32MZ4 808 aaKnown RBP16.53■□□□□ 0.24
PRPF39-204ENST00000553605 NFRKBQ6P4R8 1299 aa16.53■□□□□ 0.24
PRPF39-204ENST00000553605 TMEM57Q8N5G2 664 aa16.53■□□□□ 0.24
PRPF39-204ENST00000553605 PPP1R13LQ8WUF5 828 aa16.53■□□□□ 0.24
PRPF39-204ENST00000553605 UPF3BQ9BZI7 483 aaKnown RBP16.53■□□□□ 0.24
PRPF39-204ENST00000553605 PRKAG3Q9UGI9 489 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms