RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 FRMPD2Q68DX3 1309 aaPredicted RBP13.56□□□□□ -0.24
NEK3-204ENST00000552973 A0A0U1RQG5 324 aaPredicted RBP13.55□□□□□ -0.24
NEK3-204ENST00000552973 ASB14A6NK59 587 aa13.55□□□□□ -0.24
NEK3-204ENST00000552973 ARVCFO00192 962 aa13.55□□□□□ -0.24
NEK3-204ENST00000552973 DYNC1LI2O43237 492 aaPredicted RBP13.55□□□□□ -0.24
NEK3-204ENST00000552973 ORC4O43929 436 aa13.55□□□□□ -0.24
NEK3-204ENST00000552973 TIMP1P01033 207 aa13.55□□□□□ -0.24
NEK3-204ENST00000552973 HSPD1P10809 573 aaKnown RBP13.55□□□□□ -0.24
NEK3-204ENST00000552973 SMPD1P17405 629 aa13.55□□□□□ -0.24
NEK3-204ENST00000552973 CDK7P50613 346 aa13.55□□□□□ -0.24
NEK3-204ENST00000552973 SMAD3P84022 425 aaKnown RBP13.55□□□□□ -0.24
NEK3-204ENST00000552973 HDAC1Q13547 482 aaPredicted RBP13.55□□□□□ -0.24
NEK3-204ENST00000552973 ALX1Q15699 326 aa13.55□□□□□ -0.24
NEK3-204ENST00000552973 CXCL17Q6UXB2 119 aa13.55□□□□□ -0.24
NEK3-204ENST00000552973 FBXO16Q8IX29 292 aaPredicted RBP13.55□□□□□ -0.24
NEK3-204ENST00000552973 DCAF4Q8WV16 495 aa13.55□□□□□ -0.24
NEK3-204ENST00000552973 MYLIPQ8WY64 445 aa13.55□□□□□ -0.24
NEK3-204ENST00000552973 YTHDC1Q96MU7 727 aaKnown RBP13.55□□□□□ -0.24
NEK3-204ENST00000552973 TMEM47Q9BQJ4 181 aa13.55□□□□□ -0.24
NEK3-204ENST00000552973 PPP1R12CQ9BZL4 782 aa13.55□□□□□ -0.24
NEK3-204ENST00000552973 CYP39A1Q9NYL5 469 aa13.55□□□□□ -0.24
NEK3-204ENST00000552973 ASTN1O14525 1302 aa13.55□□□□□ -0.24
NEK3-204ENST00000552973 SMCHD1A6NHR9 2005 aa13.54□□□□□ -0.24
NEK3-204ENST00000552973 FGRP09769 529 aa13.54□□□□□ -0.24
NEK3-204ENST00000552973 ACRP10323 421 aa13.54□□□□□ -0.24
NEK3-204ENST00000552973 NOVP48745 357 aa13.54□□□□□ -0.24
NEK3-204ENST00000552973 BAATQ14032 418 aaPredicted RBP13.54□□□□□ -0.24
NEK3-204ENST00000552973 SYDE2Q5VT97 1194 aa13.54□□□□□ -0.24
NEK3-204ENST00000552973 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.54□□□□□ -0.24
NEK3-204ENST00000552973 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.54□□□□□ -0.243e-10■■■■□ 19.3
NEK3-204ENST00000552973 RANBP17Q9H2T7 1088 aaKnown RBP13.54□□□□□ -0.24
NEK3-204ENST00000552973 TBX21Q9UL17 535 aa13.54□□□□□ -0.24
NEK3-204ENST00000552973 GNEQ9Y223 722 aaKnown RBP13.54□□□□□ -0.24
NEK3-204ENST00000552973 ZNFX1Q9P2E3 1918 aaKnown RBP13.54□□□□□ -0.24
NEK3-204ENST00000552973 LTBP2Q14767 1821 aa13.53□□□□□ -0.24
NEK3-204ENST00000552973 ICAM1P05362 532 aa13.53□□□□□ -0.24
NEK3-204ENST00000552973 TOP1P11387 765 aaKnown RBP13.53□□□□□ -0.24
NEK3-204ENST00000552973 CSF2RAP15509 400 aa13.53□□□□□ -0.24
NEK3-204ENST00000552973 MFSD5Q6N075 450 aa13.53□□□□□ -0.24
NEK3-204ENST00000552973 TAPT1Q6NXT6 567 aa13.53□□□□□ -0.24
NEK3-204ENST00000552973 KIAA1211Q6ZU35 1233 aa13.53□□□□□ -0.24
NEK3-204ENST00000552973 C16orf59Q7L2K0 433 aa13.53□□□□□ -0.24
NEK3-204ENST00000552973 TLK2Q86UE8 772 aa13.53□□□□□ -0.24
NEK3-204ENST00000552973 FAM126BQ8IXS8 530 aa13.53□□□□□ -0.24
NEK3-204ENST00000552973 AP5M1Q9H0R1 490 aa13.53□□□□□ -0.24
NEK3-204ENST00000552973 MROH7Q68CQ1 1323 aa13.53□□□□□ -0.24
NEK3-204ENST00000552973 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.52□□□□□ -0.25
NEK3-204ENST00000552973 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.52□□□□□ -0.25
NEK3-204ENST00000552973 PTPDC1A2A3K4 754 aa13.52□□□□□ -0.25
NEK3-204ENST00000552973 GRXCR1A8MXD5 290 aa13.52□□□□□ -0.25
NEK3-204ENST00000552973 NFIBO00712 420 aa13.52□□□□□ -0.25
NEK3-204ENST00000552973 TLR3O15455 904 aaKnown RBP13.52□□□□□ -0.25
NEK3-204ENST00000552973 CYP2C18P33260 490 aa13.52□□□□□ -0.25
NEK3-204ENST00000552973 PSMC6P62333 389 aa13.52□□□□□ -0.25
NEK3-204ENST00000552973 FSCN1Q16658 493 aaKnown RBP13.52□□□□□ -0.25
NEK3-204ENST00000552973 MFSD6Q6ZSS7 791 aa13.52□□□□□ -0.25
NEK3-204ENST00000552973 ZKSCAN3Q9BRR0 538 aa13.52□□□□□ -0.25
NEK3-204ENST00000552973 PLXNA1Q9UIW2 1896 aa13.51□□□□□ -0.25
NEK3-204ENST00000552973 CCDC171Q6TFL3 1326 aa13.51□□□□□ -0.25
NEK3-204ENST00000552973 IGHDP01880 384 aa13.51□□□□□ -0.25
NEK3-204ENST00000552973 PDHBP11177 359 aa13.51□□□□□ -0.25
NEK3-204ENST00000552973 SDSP20132 328 aa13.51□□□□□ -0.25
NEK3-204ENST00000552973 CALML3P27482 149 aa13.51□□□□□ -0.25
NEK3-204ENST00000552973 NKX3-2P78367 333 aa13.51□□□□□ -0.25
NEK3-204ENST00000552973 PPIGQ13427 754 aaKnown RBP eCLIP13.51□□□□□ -0.252e-7■■■■□ 19.4
NEK3-204ENST00000552973 ITGA7Q13683 1181 aa13.51□□□□□ -0.25
NEK3-204ENST00000552973 TMEM240Q5SV17 173 aa13.51□□□□□ -0.25
NEK3-204ENST00000552973 AKNAD1Q5T1N1 836 aa13.51□□□□□ -0.25
NEK3-204ENST00000552973 IQSEC1Q6DN90 963 aa13.51□□□□□ -0.25
NEK3-204ENST00000552973 BTNL9Q6UXG8 535 aa13.51□□□□□ -0.25
NEK3-204ENST00000552973 TBC1D10CQ8IV04 446 aa13.51□□□□□ -0.25
NEK3-204ENST00000552973 TMEM199Q8N511 208 aa13.51□□□□□ -0.25
NEK3-204ENST00000552973 MAFAQ8NHW3 353 aaPredicted RBP13.51□□□□□ -0.25
NEK3-204ENST00000552973 COL25A1Q9BXS0 654 aaPredicted RBP13.51□□□□□ -0.25
NEK3-204ENST00000552973 TCP11L1Q9NUJ3 509 aa13.51□□□□□ -0.25
NEK3-204ENST00000552973 GRIN2DO15399 1336 aa13.5□□□□□ -0.25
NEK3-204ENST00000552973 UMODL1Q5DID0 1318 aa13.5□□□□□ -0.25
NEK3-204ENST00000552973 ZEB2O60315 1214 aa13.5□□□□□ -0.25
NEK3-204ENST00000552973 CD4P01730 458 aa13.5□□□□□ -0.25
NEK3-204ENST00000552973 GOLGA8HP0CJ92 632 aa13.5□□□□□ -0.25
NEK3-204ENST00000552973 FOSL2P15408 326 aa13.5□□□□□ -0.25
NEK3-204ENST00000552973 DNAJB2P25686 324 aa13.5□□□□□ -0.25
NEK3-204ENST00000552973 PBX2P40425 430 aa13.5□□□□□ -0.25
NEK3-204ENST00000552973 ALDH5A1P51649 535 aaPredicted RBP13.5□□□□□ -0.25
NEK3-204ENST00000552973 GRIN2CQ14957 1233 aa13.5□□□□□ -0.25
NEK3-204ENST00000552973 CWC27Q6UX04 472 aaKnown RBP13.5□□□□□ -0.25
NEK3-204ENST00000552973 SLC30A10Q6XR72 485 aa13.5□□□□□ -0.25
NEK3-204ENST00000552973 ZNF365Q70YC5 407 aa13.5□□□□□ -0.25
NEK3-204ENST00000552973 CLEC4DQ8WXI8 215 aa13.5□□□□□ -0.25
NEK3-204ENST00000552973 UBA5Q9GZZ9 404 aa13.5□□□□□ -0.25
NEK3-204ENST00000552973 TRPV6Q9H1D0 765 aa13.5□□□□□ -0.25
NEK3-204ENST00000552973 CPVLQ9H3G5 476 aa13.5□□□□□ -0.25
NEK3-204ENST00000552973 RWDD1Q9H446 243 aaPredicted RBP13.5□□□□□ -0.25
NEK3-204ENST00000552973 MYH4Q9Y623 1939 aa13.5□□□□□ -0.25
NEK3-204ENST00000552973 NEDD4P46934 1319 aa13.49□□□□□ -0.25
NEK3-204ENST00000552973 CABYRO75952 493 aa13.49□□□□□ -0.25
NEK3-204ENST00000552973 CCL23P55773 120 aa13.49□□□□□ -0.25
NEK3-204ENST00000552973 ZNF543Q08ER8 600 aa13.49□□□□□ -0.25
NEK3-204ENST00000552973 RNF207Q6ZRF8 634 aa13.49□□□□□ -0.25
NEK3-204ENST00000552973 CHD1LQ86WJ1 897 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms