RNA–Protein interactions for RNA: ENST00000552931.1

SMARCC2-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, human

TSL 3

Gene SMARCC2, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCC2-215	ENST00000552931	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	7.16	□□□□□ -1.26
SMARCC2-215	ENST00000552931	SAMD3	Q8N6K7	520 aa		7.16	□□□□□ -1.26
SMARCC2-215	ENST00000552931	FGD4	Q96M96	766 aa		7.16	□□□□□ -1.26
SMARCC2-215	ENST00000552931	MTA3	Q9BTC8	594 aa		7.16	□□□□□ -1.26
SMARCC2-215	ENST00000552931	KATNBL1	Q9H079	304 aa		7.16	□□□□□ -1.26
SMARCC2-215	ENST00000552931	UPF3A	Q9H1J1	476 aa	Known RBP	7.16	□□□□□ -1.26
SMARCC2-215	ENST00000552931	RANBP17	Q9H2T7	1088 aa	Known RBP	7.16	□□□□□ -1.26
SMARCC2-215	ENST00000552931	CWC22	Q9HCG8	908 aa	Known RBP	7.16	□□□□□ -1.26
SMARCC2-215	ENST00000552931	RIPK3	Q9Y572	518 aa		7.16	□□□□□ -1.26
SMARCC2-215	ENST00000552931	TACC3	Q9Y6A5	838 aa		7.16	□□□□□ -1.26
SMARCC2-215	ENST00000552931	ELP1	O95163	1332 aa		7.16	□□□□□ -1.26
SMARCC2-215	ENST00000552931	WDR19	Q8NEZ3	1342 aa		7.16	□□□□□ -1.26
SMARCC2-215	ENST00000552931	RAD50	Q92878	1312 aa		7.16	□□□□□ -1.26
SMARCC2-215	ENST00000552931	ASB14	A6NK59	587 aa		7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	TSPY2	A6NKD2	308 aa		7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	BRD1	O95696	1058 aa		7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	ICAM1	P05362	532 aa		7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	GJA9	P57773	515 aa		7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	SKIV2L	Q15477	1246 aa	Known RBP	7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	LRRC26	Q2I0M4	334 aa		7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	SNRNP48	Q6IEG0	339 aa	Known RBP	7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	SLC39A5	Q6ZMH5	540 aa		7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	RNF180	Q86T96	592 aa		7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	ZNF589	Q86UQ0	364 aa	Predicted RBP	7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	FAM227B	Q96M60	508 aa		7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	REPIN1	Q9BWE0	567 aa	Known RBP	7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	ACAD9	Q9H845	621 aa		7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	PRDM6	Q9NQX0	595 aa		7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	MTMR10	Q9NXD2	777 aa		7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	MAP3K20	Q9NYL2	800 aa	Known RBP	7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	CTNNA3	Q9UI47	895 aa		7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	FAM184B	Q9ULE4	1060 aa		7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	CNPY2	Q9Y2B0	182 aa		7.15	□□□□□ -1.26
SMARCC2-215	ENST00000552931	PLXNA1	Q9UIW2	1896 aa		7.15	□□□□□ -1.27
SMARCC2-215	ENST00000552931	RBM47	A0AV96	593 aa	Known RBP	7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	TMEM232	C9JQI7	657 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	KBTBD13	C9JR72	458 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	PRDM1	O75626	825 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	RARB	P10826	455 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	PDHB	P11177	359 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	EDNRB	P24530	442 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	CDK7	P50613	346 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	ZNF543	Q08ER8	600 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	NMI	Q13287	307 aa	Predicted RBP	7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	ACVR2B	Q13705	512 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	PLS1	Q14651	629 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	FAM47A	Q5JRC9	791 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	MFSD6	Q6ZSS7	791 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	TEX2	Q8IWB9	1127 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	TDH	Q8IZJ6	230 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	SLC43A3	Q8NBI5	491 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	PCSK9	Q8NBP7	692 aa	Known RBP	7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	DNER	Q8NFT8	737 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	ESR2	Q92731	530 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	TMEM47	Q9BQJ4	181 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	LNPK	Q9C0E8	428 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	CNNM2	Q9H8M5	875 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	PRR12	Q9ULL5	1215 aa		7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	GNE	Q9Y223	722 aa	Known RBP	7.14	□□□□□ -1.27
SMARCC2-215	ENST00000552931	MROH7	Q68CQ1	1323 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	GRXCR2	A6NFK2	248 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	POTEB2	H3BUK9	544 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	ZNF213	O14771	459 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	KIAA0355	O15063	1070 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	CTAGE5	O15320	804 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	CABYR	O75952	493 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	MCC	P23508	829 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	MAGEA10	P43363	369 aa	Predicted RBP	7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	CTDSPL2	Q05D32	466 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	HIC1	Q14526	733 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	WDR78	Q5VTH9	848 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	IQSEC1	Q6DN90	963 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	CCDC129	Q6ZRS4	1044 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	IQCA1	Q86XH1	822 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	EXOC6	Q8TAG9	804 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	NUP133	Q8WUM0	1156 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	MTMR8	Q96EF0	704 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	DDX11	Q96FC9	970 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	CALR3	Q96L12	384 aa	Known RBP	7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	MAP3K14	Q99558	947 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	NUP88	Q99567	741 aa	Predicted RBP	7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	SENP6	Q9GZR1	1112 aa	Predicted RBP	7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	A1CF	Q9NQ94	594 aa	Known RBP	7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	CYP39A1	Q9NYL5	469 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	STX8	Q9UNK0	236 aa		7.13	□□□□□ -1.27
SMARCC2-215	ENST00000552931	TMEM265	A0A087WTH1	108 aa		7.12	□□□□□ -1.27
SMARCC2-215	ENST00000552931	NKRF	O15226	690 aa	Known RBP eCLIP	7.12	□□□□□ -1.27
SMARCC2-215	ENST00000552931	RANBP6	O60518	1105 aa	Known RBP	7.12	□□□□□ -1.27
SMARCC2-215	ENST00000552931	PGK2	P07205	417 aa		7.12	□□□□□ -1.27
SMARCC2-215	ENST00000552931	SMARCA1	P28370	1054 aa		7.12	□□□□□ -1.27
SMARCC2-215	ENST00000552931	RTP1	P59025	263 aa		7.12	□□□□□ -1.27
SMARCC2-215	ENST00000552931	ASPRV1	Q53RT3	343 aa		7.12	□□□□□ -1.27
SMARCC2-215	ENST00000552931	TTC22	Q5TAA0	569 aa		7.12	□□□□□ -1.27
SMARCC2-215	ENST00000552931	TAPT1	Q6NXT6	567 aa		7.12	□□□□□ -1.27
SMARCC2-215	ENST00000552931		Q7L0L9	218 aa		7.12	□□□□□ -1.27
SMARCC2-215	ENST00000552931	ARMCX2	Q7L311	632 aa		7.12	□□□□□ -1.27
SMARCC2-215	ENST00000552931	LRRC47	Q8N1G4	583 aa	Known RBP	7.12	□□□□□ -1.27
SMARCC2-215	ENST00000552931	ANKRD35	Q8N283	1001 aa		7.12	□□□□□ -1.27
SMARCC2-215	ENST00000552931	RUFY2	Q8WXA3	655 aa		7.12	□□□□□ -1.27
SMARCC2-215	ENST00000552931	SYMPK	Q92797	1274 aa	Known RBP	7.12	□□□□□ -1.27

Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms