RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	MIR1-1HG	Q9H1L0	117 aa		5.21	□□□□□ -1.58
USP44-208	ENST00000552440	ST7	Q9NRC1	585 aa		5.21	□□□□□ -1.58
USP44-208	ENST00000552440	AKAP10	O43572	662 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	CILP	O75339	1184 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	BMP6	P22004	513 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	MCM4	P33991	863 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	ZNF165	P49910	485 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	NFKB2	Q00653	900 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	CCDC184	Q52MB2	194 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	TM4SF20	Q53R12	229 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	PPM1J	Q5JR12	505 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	AXDND1	Q5T1B0	1012 aa	Predicted RBP	5.2	□□□□□ -1.58
USP44-208	ENST00000552440	CCDC70	Q6NSX1	233 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	ERAP2	Q6P179	960 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	CYFIP1	Q7L576	1253 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	REC114	Q7Z4M0	266 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	5.2	□□□□□ -1.58
USP44-208	ENST00000552440	SPICE1	Q8N0Z3	855 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	REXO1	Q8N1G1	1221 aa	Known RBP	5.2	□□□□□ -1.58
USP44-208	ENST00000552440	OR6P1	Q8NGX9	317 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	JARID2	Q92833	1246 aa	Predicted RBP	5.2	□□□□□ -1.58
USP44-208	ENST00000552440	SECISBP2L	Q93073	1101 aa	Known RBP	5.2	□□□□□ -1.58
USP44-208	ENST00000552440	CRBN	Q96SW2	442 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	RSPH9	Q9H1X1	276 aa	Predicted RBP	5.2	□□□□□ -1.58
USP44-208	ENST00000552440	CAAP1	Q9H8G2	361 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	ZNRF3	Q9ULT6	936 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	PCDHA4	Q9UN74	947 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	PPP2R3B	Q9Y5P8	575 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	GLI1	P08151	1106 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	CAP2	P40123	477 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	NEK2	P51955	445 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	CNGB1	Q14028	1251 aa	Predicted RBP	5.2	□□□□□ -1.58
USP44-208	ENST00000552440	TMEM67	Q5HYA8	995 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	FBXW10	Q5XX13	1052 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	THAP5	Q7Z6K1	395 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	JMY	Q8N9B5	988 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	RBBP8NL	Q8NC74	664 aa	Predicted RBP	5.2	□□□□□ -1.58
USP44-208	ENST00000552440	STK35	Q8TDR2	534 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	KRTAP4-7	Q9BYR0	210 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	ASPSCR1	Q9BZE9	553 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	BRMS1	Q9HCU9	246 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	CTNND2	Q9UQB3	1225 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	SNCAIP	Q9Y6H5	919 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	PITPNM2	Q9BZ72	1349 aa		5.2	□□□□□ -1.58
USP44-208	ENST00000552440	SLC26A4	O43511	780 aa		5.19	□□□□□ -1.58
USP44-208	ENST00000552440	MYCLP1	P12525	358 aa	Predicted RBP	5.19	□□□□□ -1.58
USP44-208	ENST00000552440	LMNB1	P20700	586 aa		5.19	□□□□□ -1.58
USP44-208	ENST00000552440	GDNF	P39905	211 aa		5.19	□□□□□ -1.58
USP44-208	ENST00000552440	CD96	P40200	585 aa		5.19	□□□□□ -1.58
USP44-208	ENST00000552440	CASP2	P42575	452 aa		5.19	□□□□□ -1.58
USP44-208	ENST00000552440	GUCY2F	P51841	1108 aa		5.19	□□□□□ -1.58
USP44-208	ENST00000552440	CLC	Q05315	142 aa		5.19	□□□□□ -1.58
USP44-208	ENST00000552440	MESP2	Q0VG99	397 aa		5.19	□□□□□ -1.58
USP44-208	ENST00000552440	SEPT6	Q14141	434 aa		5.19	□□□□□ -1.58
USP44-208	ENST00000552440	ZNF124	Q15973	351 aa		5.19	□□□□□ -1.58
USP44-208	ENST00000552440	CT47A1	Q5JQC4	288 aa	Predicted RBP	5.19	□□□□□ -1.58
USP44-208	ENST00000552440	SFRP5	Q5T4F7	317 aa		5.19	□□□□□ -1.58
USP44-208	ENST00000552440	GET4	Q7L5D6	327 aa	Predicted RBP	5.19	□□□□□ -1.58
USP44-208	ENST00000552440	LSR	Q86X29	649 aa	Predicted RBP	5.19	□□□□□ -1.58
USP44-208	ENST00000552440	MFSD3	Q96ES6	412 aa		5.19	□□□□□ -1.58
USP44-208	ENST00000552440	FRMD4B	Q9Y2L6	1034 aa		5.19	□□□□□ -1.58
USP44-208	ENST00000552440	TACC3	Q9Y6A5	838 aa		5.19	□□□□□ -1.58
USP44-208	ENST00000552440	PTCH2	Q9Y6C5	1203 aa		5.19	□□□□□ -1.58
USP44-208	ENST00000552440	DCDC2C	A8MYV0	355 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	TSPAN15	O95858	294 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	IFIT2	P09913	472 aa	Known RBP	5.18	□□□□□ -1.58
USP44-208	ENST00000552440	IMPDH2	P12268	514 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	SOX5	P35711	763 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	CASP7	P55210	303 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	FXN	Q16595	210 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	MLANA	Q16655	118 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	NKPD1	Q17RQ9	610 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	ALF	Q53S48	1182 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	FAM83B	Q5T0W9	1011 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	MPZL3	Q6UWV2	235 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	GK5	Q6ZS86	529 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	ARMCX6	Q7L4S7	300 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	C12orf40	Q86WS4	652 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	ANKLE2	Q86XL3	938 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	SIAH1	Q8IUQ4	282 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	CREBRF	Q8IUR6	639 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	SMAP1	Q8IYB5	467 aa	Predicted RBP	5.18	□□□□□ -1.58
USP44-208	ENST00000552440	CCDC89	Q8N998	374 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	KIRREL1	Q96J84	757 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	CDH19	Q9H159	772 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	GOLGA6C	A6NDK9	693 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	GOLGA6B	A6NDN3	693 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	TCEA3	O75764	348 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	RNASEH2A	O75792	299 aa	Known RBP	5.18	□□□□□ -1.58
USP44-208	ENST00000552440	EOMES	O95936	686 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	F2	P00734	622 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	GOLGA6D	P0CG33	693 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	ZNF865	P0CJ78	1059 aa	Predicted RBP	5.18	□□□□□ -1.58
USP44-208	ENST00000552440	RAC2	P15153	192 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	KIR3DL1	P43629	444 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	C21orf62-AS1	Q17RA5	79 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	MTERF2	Q49AM1	385 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	NXN	Q6DKJ4	435 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	DGKH	Q86XP1	1220 aa		5.18	□□□□□ -1.58
USP44-208	ENST00000552440	NIM1K	Q8IY84	436 aa		5.18	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms