RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 ARID5AQ03989 594 aa3.45□□□□□ -1.86
LIMA1-209ENST00000552008 DLX2Q07687 328 aaPredicted RBP3.45□□□□□ -1.86
LIMA1-209ENST00000552008 APOBRQ0VD83 1088 aa3.45□□□□□ -1.86
LIMA1-209ENST00000552008 PAK2Q13177 524 aa3.45□□□□□ -1.86
LIMA1-209ENST00000552008 AGMOQ6ZNB7 445 aa3.45□□□□□ -1.86
LIMA1-209ENST00000552008 SREK1Q8WXA9 508 aaKnown RBP3.45□□□□□ -1.86
LIMA1-209ENST00000552008 NKD1Q969G9 470 aa3.45□□□□□ -1.86
LIMA1-209ENST00000552008 GPRASP2Q96D09 838 aa3.45□□□□□ -1.86
LIMA1-209ENST00000552008 SSU72P8A0A1W2PR75 194 aa3.44□□□□□ -1.86
LIMA1-209ENST00000552008 TFE3P19532 575 aaPredicted RBP3.44□□□□□ -1.86
LIMA1-209ENST00000552008 GTF2F1P35269 517 aaKnown RBP eCLIP3.44□□□□□ -1.86
LIMA1-209ENST00000552008 PDE4BQ07343 736 aa3.44□□□□□ -1.86
LIMA1-209ENST00000552008 SEPT6Q14141 434 aa3.44□□□□□ -1.86
LIMA1-209ENST00000552008 CWF19L2Q2TBE0 894 aaKnown RBP3.44□□□□□ -1.86
LIMA1-209ENST00000552008 FBXW10Q5XX13 1052 aa3.44□□□□□ -1.86
LIMA1-209ENST00000552008 FBXL19Q6PCT2 694 aa3.44□□□□□ -1.86
LIMA1-209ENST00000552008 ZPBP2Q6X784 338 aa3.44□□□□□ -1.86
LIMA1-209ENST00000552008 PHC3Q8NDX5 983 aa3.44□□□□□ -1.86
LIMA1-209ENST00000552008 ENOX1Q8TC92 643 aaKnown RBP3.44□□□□□ -1.86
LIMA1-209ENST00000552008 ACSF2Q96CM8 615 aaPredicted RBP3.44□□□□□ -1.86
LIMA1-209ENST00000552008 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.44□□□□□ -1.86
LIMA1-209ENST00000552008 ASCC2Q9H1I8 757 aaPredicted RBP3.44□□□□□ -1.86
LIMA1-209ENST00000552008 TNFRSF10DQ9UBN6 386 aa3.44□□□□□ -1.86
LIMA1-209ENST00000552008 TCFL5Q9UL49 500 aa3.44□□□□□ -1.86
LIMA1-209ENST00000552008 FAN1Q9Y2M0 1017 aa3.44□□□□□ -1.86
LIMA1-209ENST00000552008 GPR55Q9Y2T6 319 aaPredicted RBP3.44□□□□□ -1.86
LIMA1-209ENST00000552008 PCDHB5Q9Y5E4 795 aa3.44□□□□□ -1.86
LIMA1-209ENST00000552008 LTBP3Q9NS15 1303 aa3.44□□□□□ -1.86
LIMA1-209ENST00000552008 ROBO2Q9HCK4 1378 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 FADS2P1A8MWK0 482 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 TLR3O15455 904 aaKnown RBP3.43□□□□□ -1.86
LIMA1-209ENST00000552008 FKTNO75072 461 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 ATF2P15336 505 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 PCBP3P57721 371 aaKnown RBP3.43□□□□□ -1.86
LIMA1-209ENST00000552008 MLECQ14165 292 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 FHL2Q14192 279 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 NR1I3Q14994 352 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 SEZ6Q53EL9 994 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 CCDC84Q86UT8 332 aaPredicted RBP3.43□□□□□ -1.86
LIMA1-209ENST00000552008 ZNF761Q86XN6 746 aaPredicted RBP3.43□□□□□ -1.86
LIMA1-209ENST00000552008 SLC43A3Q8NBI5 491 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 NUP43Q8NFH3 380 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 SYTL5Q8TDW5 730 aaPredicted RBP3.43□□□□□ -1.86
LIMA1-209ENST00000552008 GATAD2BQ8WXI9 593 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 RHOVQ96L33 236 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 KREMEN1Q96MU8 473 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 CRBNQ96SW2 442 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 CDK5RAP1Q96SZ6 601 aaKnown RBP3.43□□□□□ -1.86
LIMA1-209ENST00000552008 SSBP3Q9BWW4 388 aaPredicted RBP3.43□□□□□ -1.86
LIMA1-209ENST00000552008 NT5C1AQ9BXI3 368 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 ASPNQ9BXN1 380 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 HDAC8Q9BY41 377 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 UBP1Q9NZI7 540 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 ADAMTS1Q9UHI8 967 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 ADAM30Q9UKF2 790 aa3.43□□□□□ -1.86
LIMA1-209ENST00000552008 R3HCC1Q9Y3T6 440 aaKnown RBP3.43□□□□□ -1.86
LIMA1-209ENST00000552008 STK10O94804 968 aaKnown RBP3.42□□□□□ -1.86
LIMA1-209ENST00000552008 F13A1P00488 732 aa3.42□□□□□ -1.86
LIMA1-209ENST00000552008 NASPP49321 788 aaPredicted RBP3.42□□□□□ -1.86
LIMA1-209ENST00000552008 SARSP49591 514 aaKnown RBP3.42□□□□□ -1.86
LIMA1-209ENST00000552008 ZNF165P49910 485 aa3.42□□□□□ -1.86
LIMA1-209ENST00000552008 RPL6Q02878 288 aaKnown RBP3.42□□□□□ -1.86
LIMA1-209ENST00000552008 NMIQ13287 307 aaPredicted RBP3.42□□□□□ -1.86
LIMA1-209ENST00000552008 MPP2Q14168 576 aa3.42□□□□□ -1.86
LIMA1-209ENST00000552008 GLB1LQ6UWU2 654 aa3.42□□□□□ -1.86
LIMA1-209ENST00000552008 BNC2Q6ZN30 1099 aaPredicted RBP3.42□□□□□ -1.86
LIMA1-209ENST00000552008 GK5Q6ZS86 529 aa3.42□□□□□ -1.86
LIMA1-209ENST00000552008 FAM196AQ6ZSG2 479 aa3.42□□□□□ -1.86
LIMA1-209ENST00000552008 FAM13CQ8NE31 585 aa3.42□□□□□ -1.86
LIMA1-209ENST00000552008 UBXN4Q92575 508 aa3.42□□□□□ -1.86
LIMA1-209ENST00000552008 TCTN2Q96GX1 697 aa3.42□□□□□ -1.86
LIMA1-209ENST00000552008 EAF1Q96JC9 268 aaPredicted RBP3.42□□□□□ -1.86
LIMA1-209ENST00000552008 FCRL2Q96LA5 508 aaPredicted RBP3.42□□□□□ -1.86
LIMA1-209ENST00000552008 FERD3LQ96RJ6 166 aa3.42□□□□□ -1.86
LIMA1-209ENST00000552008 TINF2Q9BSI4 451 aa3.42□□□□□ -1.86
LIMA1-209ENST00000552008 KLC2Q9H0B6 622 aa3.42□□□□□ -1.86
LIMA1-209ENST00000552008 NTMQ9P121 344 aa3.42□□□□□ -1.86
LIMA1-209ENST00000552008 ACSL6Q9UKU0 697 aa3.42□□□□□ -1.86
LIMA1-209ENST00000552008 EFR3BQ9Y2G0 817 aa3.42□□□□□ -1.86
LIMA1-209ENST00000552008 ZNF536O15090 1300 aa3.42□□□□□ -1.86
LIMA1-209ENST00000552008 SYPP08247 313 aa3.41□□□□□ -1.86
LIMA1-209ENST00000552008 ATF4P18848 351 aaPredicted RBP3.41□□□□□ -1.86
LIMA1-209ENST00000552008 GJA8P48165 433 aa3.41□□□□□ -1.86
LIMA1-209ENST00000552008 ATXN1P54253 815 aaKnown RBP3.41□□□□□ -1.86
LIMA1-209ENST00000552008 PURAQ00577 322 aaKnown RBP3.41□□□□□ -1.86
LIMA1-209ENST00000552008 MVKQ03426 396 aa3.41□□□□□ -1.86
LIMA1-209ENST00000552008 COL9A2Q14055 689 aaPredicted RBP3.41□□□□□ -1.86
LIMA1-209ENST00000552008 BBS9Q3SYG4 887 aa3.41□□□□□ -1.86
LIMA1-209ENST00000552008 LIMS2Q7Z4I7 341 aa3.41□□□□□ -1.86
LIMA1-209ENST00000552008 DAGLBQ8NCG7 672 aa3.41□□□□□ -1.86
LIMA1-209ENST00000552008 LINC00116Q8NCU8 138 aa3.41□□□□□ -1.86
LIMA1-209ENST00000552008 SEC16BQ96JE7 1060 aa3.41□□□□□ -1.86
LIMA1-209ENST00000552008 PLA2G2DQ9UNK4 145 aa3.41□□□□□ -1.86
LIMA1-209ENST00000552008 WDR33Q9C0J8 1336 aaKnown RBP3.41□□□□□ -1.86
LIMA1-209ENST00000552008 UPK3BL1B0FP48 263 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 UPK3BL2E5RIL1 263 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 U2SURPO15042 1029 aaKnown RBP3.4□□□□□ -1.87
LIMA1-209ENST00000552008 GREM1O60565 184 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 YARSP54577 528 aaKnown RBP3.4□□□□□ -1.87
LIMA1-209ENST00000552008 CHMP4BP1P59074 171 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms