RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 DCP1AQ9NPI6 582 aaPredicted RBP12.68□□□□□ -0.38
VPS29-208ENST00000550267 ADAMTS5Q9UNA0 930 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 CNPY2Q9Y2B0 182 aa12.68□□□□□ -0.38
VPS29-208ENST00000550267 ZNF532Q9HCE3 1301 aa12.67□□□□□ -0.38
VPS29-208ENST00000550267 ACRP10323 421 aa12.67□□□□□ -0.38
VPS29-208ENST00000550267 CSF2RAP15509 400 aa12.67□□□□□ -0.38
VPS29-208ENST00000550267 PDE6AP16499 860 aa12.67□□□□□ -0.38
VPS29-208ENST00000550267 STAT3P40763 770 aa12.67□□□□□ -0.38
VPS29-208ENST00000550267 PPIGQ13427 754 aaKnown RBP eCLIP12.67□□□□□ -0.38
VPS29-208ENST00000550267 SLC9C2Q5TAH2 1124 aa12.67□□□□□ -0.38
VPS29-208ENST00000550267 RASIP1Q5U651 963 aa12.67□□□□□ -0.38
VPS29-208ENST00000550267 CCSAPQ6IQ19 270 aaPredicted RBP12.67□□□□□ -0.38
VPS29-208ENST00000550267 UHRF1Q96T88 793 aaPredicted RBP12.67□□□□□ -0.38
VPS29-208ENST00000550267 SWAP70Q9UH65 585 aa12.67□□□□□ -0.38
VPS29-208ENST00000550267 FAM184BQ9ULE4 1060 aa12.67□□□□□ -0.38
VPS29-208ENST00000550267 SMIM22K7EJ46 135 aa12.66□□□□□ -0.38
VPS29-208ENST00000550267 VWA5AO00534 786 aa12.66□□□□□ -0.38
VPS29-208ENST00000550267 NR1I2O75469 434 aa12.66□□□□□ -0.38
VPS29-208ENST00000550267 DGAT1O75907 488 aa12.66□□□□□ -0.38
VPS29-208ENST00000550267 IGFBP4P22692 258 aa12.66□□□□□ -0.38
VPS29-208ENST00000550267 PLA2G5P39877 138 aa12.66□□□□□ -0.38
VPS29-208ENST00000550267 MRPS5P82675 430 aaKnown RBP12.66□□□□□ -0.38
VPS29-208ENST00000550267 ZNF365Q70YC5 407 aa12.66□□□□□ -0.38
VPS29-208ENST00000550267 AACSQ86V21 672 aa12.66□□□□□ -0.38
VPS29-208ENST00000550267 REPS2Q8NFH8 660 aa12.66□□□□□ -0.38
VPS29-208ENST00000550267 GLT1D1Q96MS3 346 aa12.66□□□□□ -0.38
VPS29-208ENST00000550267 PPP1R12CQ9BZL4 782 aa12.66□□□□□ -0.38
VPS29-208ENST00000550267 ZHX1Q9UKY1 873 aaPredicted RBP12.66□□□□□ -0.38
VPS29-208ENST00000550267 ZNF214Q9UL59 606 aaPredicted RBP12.66□□□□□ -0.38
VPS29-208ENST00000550267 PPP1R9AQ9ULJ8 1098 aa12.66□□□□□ -0.38
VPS29-208ENST00000550267 PARP14Q460N5 1801 aa12.66□□□□□ -0.38
VPS29-208ENST00000550267 COL11A1P12107 1806 aaPredicted RBP12.65□□□□□ -0.38
VPS29-208ENST00000550267 TCRBV5S4A2TA0A5A2 114 aa12.65□□□□□ -0.38
VPS29-208ENST00000550267 APBB1O00213 710 aa12.65□□□□□ -0.38
VPS29-208ENST00000550267 PRKAB2O43741 272 aa12.65□□□□□ -0.38
VPS29-208ENST00000550267 RAD21O60216 631 aa12.65□□□□□ -0.38
VPS29-208ENST00000550267 SNAI1O95863 264 aaPredicted RBP12.65□□□□□ -0.38
VPS29-208ENST00000550267 ADH1BP00325 375 aa12.65□□□□□ -0.38
VPS29-208ENST00000550267 OATP04181 439 aa12.65□□□□□ -0.38
VPS29-208ENST00000550267 ASGR1P07306 291 aa12.65□□□□□ -0.38
VPS29-208ENST00000550267 EEF2P13639 858 aaKnown RBP12.65□□□□□ -0.38
VPS29-208ENST00000550267 CDK7P50613 346 aa12.65□□□□□ -0.38
VPS29-208ENST00000550267 TTF1Q15361 905 aaPredicted RBP12.65□□□□□ -0.38
VPS29-208ENST00000550267 FAM83BQ5T0W9 1011 aa12.65□□□□□ -0.38
VPS29-208ENST00000550267 CCDC174Q6PII3 467 aa12.65□□□□□ -0.38
VPS29-208ENST00000550267 LIAT1Q6ZQX7 453 aa12.65□□□□□ -0.38
VPS29-208ENST00000550267 TMEM199Q8N511 208 aa12.65□□□□□ -0.38
VPS29-208ENST00000550267 FAM122AQ96E09 287 aa12.65□□□□□ -0.38
VPS29-208ENST00000550267 NKX2-4Q9H2Z4 354 aa12.65□□□□□ -0.38
VPS29-208ENST00000550267 ARMT1Q9H993 441 aa12.65□□□□□ -0.38
VPS29-208ENST00000550267 EXOC6BQ9Y2D4 811 aa12.65□□□□□ -0.38
VPS29-208ENST00000550267 ELP1O95163 1332 aa12.64□□□□□ -0.39
VPS29-208ENST00000550267 MROH7Q68CQ1 1323 aa12.64□□□□□ -0.39
VPS29-208ENST00000550267 SYNGAP1Q96PV0 1343 aa12.64□□□□□ -0.39
VPS29-208ENST00000550267 PLXNA1Q9UIW2 1896 aa12.64□□□□□ -0.39
VPS29-208ENST00000550267 CYP2D7A0A087X1C5 515 aa12.64□□□□□ -0.39
VPS29-208ENST00000550267 ADCY6O43306 1168 aa12.64□□□□□ -0.39
VPS29-208ENST00000550267 DUSP11O75319 330 aaKnown RBP12.64□□□□□ -0.39
VPS29-208ENST00000550267 C6orf222P0C671 652 aaPredicted RBP12.64□□□□□ -0.39
VPS29-208ENST00000550267 COPB2P35606 906 aa12.64□□□□□ -0.39
VPS29-208ENST00000550267 CDK8P49336 464 aa12.64□□□□□ -0.39
VPS29-208ENST00000550267 RAB30Q15771 203 aa12.64□□□□□ -0.39
VPS29-208ENST00000550267 SLFNL1Q499Z3 407 aa12.64□□□□□ -0.39
VPS29-208ENST00000550267 PKDCCQ504Y2 493 aa12.64□□□□□ -0.39
VPS29-208ENST00000550267 ZKSCAN2Q63HK3 967 aa12.64□□□□□ -0.39
VPS29-208ENST00000550267 PSRC1Q6PGN9 363 aaPredicted RBP12.64□□□□□ -0.39
VPS29-208ENST00000550267 MSL3Q8N5Y2 521 aaKnown RBP12.64□□□□□ -0.39
VPS29-208ENST00000550267 IL27Q8NEV9 243 aa12.64□□□□□ -0.39
VPS29-208ENST00000550267 VTI1AQ96AJ9 217 aa12.64□□□□□ -0.39
VPS29-208ENST00000550267 CCDC17Q96LX7 622 aa12.64□□□□□ -0.39
VPS29-208ENST00000550267 MSRAQ9UJ68 235 aa12.64□□□□□ -0.39
VPS29-208ENST00000550267 SMCHD1A6NHR9 2005 aa12.64□□□□□ -0.39
VPS29-208ENST00000550267 ZNFX1Q9P2E3 1918 aaKnown RBP12.63□□□□□ -0.39
VPS29-208ENST00000550267 A0A0U1RQG5 324 aaPredicted RBP12.63□□□□□ -0.39
VPS29-208ENST00000550267 ARVCFO00192 962 aa12.63□□□□□ -0.39
VPS29-208ENST00000550267 GOLIM4O00461 696 aa12.63□□□□□ -0.39
VPS29-208ENST00000550267 CST5P28325 142 aaPredicted RBP12.63□□□□□ -0.39
VPS29-208ENST00000550267 CYP2C18P33260 490 aa12.63□□□□□ -0.39
VPS29-208ENST00000550267 ACVR2BQ13705 512 aa12.63□□□□□ -0.39
VPS29-208ENST00000550267 SNRNP48Q6IEG0 339 aaKnown RBP12.63□□□□□ -0.39
VPS29-208ENST00000550267 MAMDC4Q6UXC1 1216 aa12.63□□□□□ -0.39
VPS29-208ENST00000550267 FAM126BQ8IXS8 530 aa12.63□□□□□ -0.39
VPS29-208ENST00000550267 PCSK9Q8NBP7 692 aaKnown RBP12.63□□□□□ -0.39
VPS29-208ENST00000550267 DDX11Q96FC9 970 aa12.63□□□□□ -0.39
VPS29-208ENST00000550267 NECAB3Q96P71 396 aaPredicted RBP12.63□□□□□ -0.39
VPS29-208ENST00000550267 DNAJC2Q99543 621 aaKnown RBP12.63□□□□□ -0.39
VPS29-208ENST00000550267 IL1RAPL2Q9NP60 686 aa12.63□□□□□ -0.39
VPS29-208ENST00000550267 CXXC1Q9P0U4 656 aaPredicted RBP12.63□□□□□ -0.39
VPS29-208ENST00000550267 YBX2Q9Y2T7 364 aaKnown RBP12.63□□□□□ -0.39
VPS29-208ENST00000550267 RIPK3Q9Y572 518 aa12.63□□□□□ -0.39
VPS29-208ENST00000550267 DNAJC25-GNG10A0A024R161 153 aa12.62□□□□□ -0.39
VPS29-208ENST00000550267 TLR3O15455 904 aaKnown RBP12.62□□□□□ -0.39
VPS29-208ENST00000550267 MBD4O95243 580 aa12.62□□□□□ -0.39
VPS29-208ENST00000550267 C12orf60Q5U649 245 aa12.62□□□□□ -0.39
VPS29-208ENST00000550267 CEP85Q6P2H3 762 aa12.62□□□□□ -0.39
VPS29-208ENST00000550267 C16orf86Q6ZW13 317 aa12.62□□□□□ -0.39
VPS29-208ENST00000550267 ERC1Q8IUD2 1116 aa12.62□□□□□ -0.39
VPS29-208ENST00000550267 HERVK_113Q902F9 699 aa12.62□□□□□ -0.39
VPS29-208ENST00000550267 NUP88Q99567 741 aaPredicted RBP12.62□□□□□ -0.39
VPS29-208ENST00000550267 TEX13BQ9BXU2 312 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms