RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 CABYRO75952 493 aa12.77□□□□□ -0.37
VTI1BP3-201ENST00000550220 C6orf222P0C671 652 aaPredicted RBP12.77□□□□□ -0.37
VTI1BP3-201ENST00000550220 SNHG28P0DPA3 235 aa12.77□□□□□ -0.37
VTI1BP3-201ENST00000550220 PDHBP11177 359 aa12.77□□□□□ -0.37
VTI1BP3-201ENST00000550220 TNFAIP2Q03169 654 aa12.77□□□□□ -0.37
VTI1BP3-201ENST00000550220 ZNF543Q08ER8 600 aa12.77□□□□□ -0.37
VTI1BP3-201ENST00000550220 GNASQ5JWF2 1037 aa12.77□□□□□ -0.37
VTI1BP3-201ENST00000550220 NSMFQ6X4W1 530 aa12.77□□□□□ -0.37
VTI1BP3-201ENST00000550220 NOL8Q76FK4 1167 aaKnown RBP12.77□□□□□ -0.37
VTI1BP3-201ENST00000550220 RUFY2Q8WXA3 655 aa12.77□□□□□ -0.37
VTI1BP3-201ENST00000550220 ANKS1AQ92625 1134 aa12.77□□□□□ -0.37
VTI1BP3-201ENST00000550220 LRCH3Q96II8 777 aa12.77□□□□□ -0.37
VTI1BP3-201ENST00000550220 UPF3AQ9H1J1 476 aaKnown RBP12.77□□□□□ -0.37
VTI1BP3-201ENST00000550220 GPCPD1Q9NPB8 672 aa12.77□□□□□ -0.37
VTI1BP3-201ENST00000550220 PDLIM7Q9NR12 457 aa12.77□□□□□ -0.37
VTI1BP3-201ENST00000550220 PARP14Q460N5 1801 aa12.76□□□□□ -0.37
VTI1BP3-201ENST00000550220 SOWAHBA6NEL2 793 aa12.76□□□□□ -0.37
VTI1BP3-201ENST00000550220 KIAA0355O15063 1070 aa12.76□□□□□ -0.37
VTI1BP3-201ENST00000550220 SLC16A2P36021 539 aa12.76□□□□□ -0.37
VTI1BP3-201ENST00000550220 FAM109BQ6ICB4 259 aaPredicted RBP12.76□□□□□ -0.37
VTI1BP3-201ENST00000550220 TTBK2Q6IQ55 1244 aa12.76□□□□□ -0.37
VTI1BP3-201ENST00000550220 TBC1D10CQ8IV04 446 aa12.76□□□□□ -0.37
VTI1BP3-201ENST00000550220 MORC4Q8TE76 937 aa12.76□□□□□ -0.37
VTI1BP3-201ENST00000550220 VTI1AQ96AJ9 217 aa12.76□□□□□ -0.37
VTI1BP3-201ENST00000550220 CHMP4CQ96CF2 233 aa12.76□□□□□ -0.37
VTI1BP3-201ENST00000550220 KATNBL1Q9H079 304 aa12.76□□□□□ -0.37
VTI1BP3-201ENST00000550220 AP5M1Q9H0R1 490 aa12.76□□□□□ -0.37
VTI1BP3-201ENST00000550220 KAT14Q9H8E8 782 aa12.76□□□□□ -0.37
VTI1BP3-201ENST00000550220 VTA1Q9NP79 307 aa12.76□□□□□ -0.37
VTI1BP3-201ENST00000550220 TMEM39AQ9NV64 488 aa12.76□□□□□ -0.37
VTI1BP3-201ENST00000550220 WDR19Q8NEZ3 1342 aa12.76□□□□□ -0.37
VTI1BP3-201ENST00000550220 A0A0U1RQG5 324 aaPredicted RBP12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 TRIM43BA6NCK2 446 aa12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 PQBP1O60828 265 aaKnown RBP12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 KDM4AO75164 1064 aa12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 ASGR1P07306 291 aa12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 RAG1P15918 1043 aa12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 SNAP25P60880 206 aa12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 BAATQ14032 418 aaPredicted RBP12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 MUM1L1Q5H9M0 696 aa12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 FRMPD2Q68DX3 1309 aaPredicted RBP12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 DEFB123Q8N688 67 aa12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 RGS22Q8NE09 1264 aa12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 BADQ92934 168 aa12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 TRIM43Q96BQ3 446 aaPredicted RBP12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 LENG1Q96BZ8 264 aaPredicted RBP12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 ALPK3Q96L96 1907 aa12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 ZSCAN10Q96SZ4 725 aaPredicted RBP12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 ZNFX1Q9P2E3 1918 aaKnown RBP12.75□□□□□ -0.37
VTI1BP3-201ENST00000550220 MYH4Q9Y623 1939 aa12.74□□□□□ -0.37
VTI1BP3-201ENST00000550220 COL11A1P12107 1806 aaPredicted RBP12.74□□□□□ -0.37
VTI1BP3-201ENST00000550220 RAD50Q92878 1312 aa12.74□□□□□ -0.37
VTI1BP3-201ENST00000550220 PTPDC1A2A3K4 754 aa12.74□□□□□ -0.37
VTI1BP3-201ENST00000550220 TLR3O15455 904 aaKnown RBP12.74□□□□□ -0.37
VTI1BP3-201ENST00000550220 TRDNQ13061 729 aa12.74□□□□□ -0.37
VTI1BP3-201ENST00000550220 ASPRV1Q53RT3 343 aa12.74□□□□□ -0.37
VTI1BP3-201ENST00000550220 RNF207Q6ZRF8 634 aa12.74□□□□□ -0.37
VTI1BP3-201ENST00000550220 PNMA1Q8ND90 353 aa12.74□□□□□ -0.37
VTI1BP3-201ENST00000550220 DNERQ8NFT8 737 aa12.74□□□□□ -0.37
VTI1BP3-201ENST00000550220 UBAC1Q9BSL1 405 aa12.74□□□□□ -0.37
VTI1BP3-201ENST00000550220 ZSWIM5Q9P217 1185 aa12.74□□□□□ -0.37
VTI1BP3-201ENST00000550220 GNEQ9Y223 722 aaKnown RBP12.74□□□□□ -0.37
VTI1BP3-201ENST00000550220 NEDD4P46934 1319 aa12.73□□□□□ -0.37
VTI1BP3-201ENST00000550220 ARVCFO00192 962 aa12.73□□□□□ -0.37
VTI1BP3-201ENST00000550220 CDK7P50613 346 aa12.73□□□□□ -0.37
VTI1BP3-201ENST00000550220 FPGSQ05932 587 aa12.73□□□□□ -0.37
VTI1BP3-201ENST00000550220 FAAP100Q0VG06 881 aa12.73□□□□□ -0.37
VTI1BP3-201ENST00000550220 FSCN1Q16658 493 aaKnown RBP12.73□□□□□ -0.37
VTI1BP3-201ENST00000550220 BRDTQ58F21 947 aaPredicted RBP12.73□□□□□ -0.37
VTI1BP3-201ENST00000550220 TTC22Q5TAA0 569 aa12.73□□□□□ -0.37
VTI1BP3-201ENST00000550220 TAPT1Q6NXT6 567 aa12.73□□□□□ -0.37
VTI1BP3-201ENST00000550220 KIAA1211Q6ZU35 1233 aa12.73□□□□□ -0.37
VTI1BP3-201ENST00000550220 SH3RF1Q7Z6J0 888 aa12.73□□□□□ -0.37
VTI1BP3-201ENST00000550220 TLK2Q86UE8 772 aa12.73□□□□□ -0.37
VTI1BP3-201ENST00000550220 MCF2L2Q86YR7 1114 aa12.73□□□□□ -0.37
VTI1BP3-201ENST00000550220 U3KPZ7 1027 aaPredicted RBP12.73□□□□□ -0.37
VTI1BP3-201ENST00000550220 SMCHD1A6NHR9 2005 aa12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 MYADML2A6NDP7 307 aa12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 B4E1Z4 1266 aa12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 NKRFO15226 690 aaKnown RBP eCLIP12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 DYNC1LI2O43237 492 aaPredicted RBP12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 TIMP1P01033 207 aa12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 PARP1P09874 1014 aaKnown RBP12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 SMPD1P17405 629 aa12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 ALDH5A1P51649 535 aaPredicted RBP12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 TRAF1Q13077 416 aa12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 SHHQ15465 462 aa12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 DUSP28Q4G0W2 176 aa12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 RASGRP2Q7LDG7 609 aa12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 ENAHQ8N8S7 591 aaPredicted RBP12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 CLEC4DQ8WXI8 215 aa12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 ZKSCAN3Q9BRR0 538 aa12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 STXBP5LQ9Y2K9 1186 aa12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 SZT2Q5T011 3432 aa12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 LAMA3Q16787 3333 aa12.72□□□□□ -0.37
VTI1BP3-201ENST00000550220 ABCB11O95342 1321 aa12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 RBM47A0AV96 593 aaKnown RBP12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 NFIBO00712 420 aa12.71□□□□□ -0.37
VTI1BP3-201ENST00000550220 CTAGE5O15320 804 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms