RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 SNHG28P0DPA3 235 aa19.17■□□□□ 0.66
VPS29-207ENST00000549970 NT5C2P49902 561 aa19.17■□□□□ 0.66
VPS29-207ENST00000549970 ACLYP53396 1101 aa19.17■□□□□ 0.66
VPS29-207ENST00000549970 IRX5P78411 483 aaPredicted RBP19.17■□□□□ 0.66
VPS29-207ENST00000549970 C1orf53Q5VUE5 145 aa19.17■□□□□ 0.66
VPS29-207ENST00000549970 KLHDC9Q8NEP7 349 aa19.17■□□□□ 0.66
VPS29-207ENST00000549970 PURBQ96QR8 312 aaKnown RBP19.17■□□□□ 0.66
VPS29-207ENST00000549970 TSEN34Q9BSV6 310 aaKnown RBP19.17■□□□□ 0.66
VPS29-207ENST00000549970 SPC25Q9HBM1 224 aa19.17■□□□□ 0.66
VPS29-207ENST00000549970 PDLIM7Q9NR12 457 aa19.17■□□□□ 0.66
VPS29-207ENST00000549970 ASTN1O14525 1302 aa19.17■□□□□ 0.66
VPS29-207ENST00000549970 LCTP09848 1927 aa19.16■□□□□ 0.66
VPS29-207ENST00000549970 NFIBO00712 420 aa19.16■□□□□ 0.66
VPS29-207ENST00000549970 TLE2Q04725 743 aa19.16■□□□□ 0.66
VPS29-207ENST00000549970 KCNA10Q16322 511 aa19.16■□□□□ 0.66
VPS29-207ENST00000549970 CCDC178Q5BJE1 867 aa19.16■□□□□ 0.66
VPS29-207ENST00000549970 SH3RF1Q7Z6J0 888 aa19.16■□□□□ 0.66
VPS29-207ENST00000549970 PNMA1Q8ND90 353 aa19.16■□□□□ 0.66
VPS29-207ENST00000549970 ZSCAN10Q96SZ4 725 aaPredicted RBP19.16■□□□□ 0.66
VPS29-207ENST00000549970 CPVLQ9H3G5 476 aa19.16■□□□□ 0.66
VPS29-207ENST00000549970 KAT14Q9H8E8 782 aa19.16■□□□□ 0.66
VPS29-207ENST00000549970 STARD7Q9NQZ5 370 aa19.16■□□□□ 0.66
VPS29-207ENST00000549970 ZSWIM5Q9P217 1185 aa19.16■□□□□ 0.66
VPS29-207ENST00000549970 LAMA2P24043 3122 aaKnown RBP19.16■□□□□ 0.66
VPS29-207ENST00000549970 LRRC37A2A6NM11 1700 aa19.15■□□□□ 0.66
VPS29-207ENST00000549970 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.15■□□□□ 0.66
VPS29-207ENST00000549970 PTPDC1A2A3K4 754 aa19.15■□□□□ 0.66
VPS29-207ENST00000549970 MOXD2PA6NHM9 499 aa19.15■□□□□ 0.66
VPS29-207ENST00000549970 PQBP1O60828 265 aaKnown RBP19.15■□□□□ 0.66
VPS29-207ENST00000549970 GJA9P57773 515 aa19.15■□□□□ 0.66
VPS29-207ENST00000549970 BAATQ14032 418 aaPredicted RBP19.15■□□□□ 0.66
VPS29-207ENST00000549970 LRIT3Q3SXY7 679 aa19.15■□□□□ 0.66
VPS29-207ENST00000549970 GPATCH4Q5T3I0 446 aaKnown RBP19.15■□□□□ 0.66
VPS29-207ENST00000549970 CCSAPQ6IQ19 270 aaPredicted RBP19.15■□□□□ 0.66
VPS29-207ENST00000549970 NOL8Q76FK4 1167 aaKnown RBP19.15■□□□□ 0.66
VPS29-207ENST00000549970 EEPD1Q7L9B9 569 aa19.15■□□□□ 0.66
VPS29-207ENST00000549970 NUP133Q8WUM0 1156 aa19.15■□□□□ 0.66
VPS29-207ENST00000549970 KRT23Q9C075 422 aa19.15■□□□□ 0.66
VPS29-207ENST00000549970 RAD50Q92878 1312 aa19.15■□□□□ 0.66
VPS29-207ENST00000549970 TRIM43BA6NCK2 446 aa19.14■□□□□ 0.65
VPS29-207ENST00000549970 CST5P28325 142 aaPredicted RBP19.14■□□□□ 0.65
VPS29-207ENST00000549970 TNFAIP2Q03169 654 aa19.14■□□□□ 0.65
VPS29-207ENST00000549970 GNASQ5JWF2 1037 aa19.14■□□□□ 0.65
VPS29-207ENST00000549970 FBXO16Q8IX29 292 aaPredicted RBP19.14■□□□□ 0.65
VPS29-207ENST00000549970 ENAHQ8N8S7 591 aaPredicted RBP19.14■□□□□ 0.65
VPS29-207ENST00000549970 TRIM43Q96BQ3 446 aaPredicted RBP19.14■□□□□ 0.65
VPS29-207ENST00000549970 UBA5Q9GZZ9 404 aa19.14■□□□□ 0.65
VPS29-207ENST00000549970 UPF3AQ9H1J1 476 aaKnown RBP19.14■□□□□ 0.65
VPS29-207ENST00000549970 TNKSO95271 1327 aa19.14■□□□□ 0.65
VPS29-207ENST00000549970 ASGR1P07306 291 aa19.13■□□□□ 0.65
VPS29-207ENST00000549970 CLTBP09497 229 aa19.13■□□□□ 0.65
VPS29-207ENST00000549970 CHMLP26374 656 aa19.13■□□□□ 0.65
VPS29-207ENST00000549970 CALML3P27482 149 aa19.13■□□□□ 0.65
VPS29-207ENST00000549970 SLC30A10Q6XR72 485 aa19.13■□□□□ 0.65
VPS29-207ENST00000549970 PCSK9Q8NBP7 692 aaKnown RBP19.13■□□□□ 0.65
VPS29-207ENST00000549970 RUFY2Q8WXA3 655 aa19.13■□□□□ 0.65
VPS29-207ENST00000549970 CLEC4DQ8WXI8 215 aa19.13■□□□□ 0.65
VPS29-207ENST00000549970 ANKS1AQ92625 1134 aa19.13■□□□□ 0.65
VPS29-207ENST00000549970 BADQ92934 168 aa19.13■□□□□ 0.65
VPS29-207ENST00000549970 GLT1D1Q96MS3 346 aa19.13■□□□□ 0.65
VPS29-207ENST00000549970 UBAC1Q9BSL1 405 aa19.13■□□□□ 0.65
VPS29-207ENST00000549970 CNNM2Q9H8M5 875 aa19.13■□□□□ 0.65
VPS29-207ENST00000549970 PDGFCQ9NRA1 345 aa19.13■□□□□ 0.65
VPS29-207ENST00000549970 ADD3Q9UEY8 706 aaKnown RBP19.13■□□□□ 0.65
VPS29-207ENST00000549970 PNMA2Q9UL42 364 aa19.13■□□□□ 0.65
VPS29-207ENST00000549970 WDR19Q8NEZ3 1342 aa19.12■□□□□ 0.65
VPS29-207ENST00000549970 PTGS1P23219 599 aa19.12■□□□□ 0.65
VPS29-207ENST00000549970 ALDH5A1P51649 535 aaPredicted RBP19.12■□□□□ 0.65
VPS29-207ENST00000549970 BEX3Q00994 111 aa19.12■□□□□ 0.65
VPS29-207ENST00000549970 USH1GQ495M9 461 aa19.12■□□□□ 0.65
VPS29-207ENST00000549970 RNF207Q6ZRF8 634 aa19.12■□□□□ 0.65
VPS29-207ENST00000549970 TLK2Q86UE8 772 aa19.12■□□□□ 0.65
VPS29-207ENST00000549970 VTI1AQ96AJ9 217 aa19.12■□□□□ 0.65
VPS29-207ENST00000549970 CTAGE5O15320 804 aa19.11■□□□□ 0.65
VPS29-207ENST00000549970 SMPD1P17405 629 aa19.11■□□□□ 0.65
VPS29-207ENST00000549970 PTH1RQ03431 593 aa19.11■□□□□ 0.65
VPS29-207ENST00000549970 CDC37Q16543 378 aaPredicted RBP19.11■□□□□ 0.65
VPS29-207ENST00000549970 IFIT1BQ5T764 474 aaKnown RBP19.11■□□□□ 0.65
VPS29-207ENST00000549970 TAPT1Q6NXT6 567 aa19.11■□□□□ 0.65
VPS29-207ENST00000549970 VTA1Q9NP79 307 aa19.11■□□□□ 0.65
VPS29-207ENST00000549970 TMEM39AQ9NV64 488 aa19.11■□□□□ 0.65
VPS29-207ENST00000549970 GNEQ9Y223 722 aaKnown RBP19.11■□□□□ 0.65
VPS29-207ENST00000549970 ELP1O95163 1332 aa19.1■□□□□ 0.65
VPS29-207ENST00000549970 DCDC2CA8MYV0 355 aa19.1■□□□□ 0.65
VPS29-207ENST00000549970 PARP1P09874 1014 aaKnown RBP19.1■□□□□ 0.65
VPS29-207ENST00000549970 ITGB8P26012 769 aa19.1■□□□□ 0.65
VPS29-207ENST00000549970 RPS6P62753 249 aaKnown RBP19.1■□□□□ 0.65
VPS29-207ENST00000549970 FAAP100Q0VG06 881 aa19.1■□□□□ 0.65
VPS29-207ENST00000549970 ASPRV1Q53RT3 343 aa19.1■□□□□ 0.65
VPS29-207ENST00000549970 KIAA1211Q6ZU35 1233 aa19.1■□□□□ 0.65
VPS29-207ENST00000549970 CYB5R4Q7L1T6 521 aa19.1■□□□□ 0.65
VPS29-207ENST00000549970 ANKRD33Q7Z3H0 272 aa19.1■□□□□ 0.65
VPS29-207ENST00000549970 MORC4Q8TE76 937 aa19.1■□□□□ 0.65
VPS29-207ENST00000549970 KIAA0355O15063 1070 aa19.09■□□□□ 0.65
VPS29-207ENST00000549970 DYNC1LI2O43237 492 aaPredicted RBP19.09■□□□□ 0.65
VPS29-207ENST00000549970 DHX16O60231 1041 aaKnown RBP19.09■□□□□ 0.65
VPS29-207ENST00000549970 CYP21A2P08686 494 aa19.09■□□□□ 0.65
VPS29-207ENST00000549970 RAG1P15918 1043 aa19.09■□□□□ 0.65
VPS29-207ENST00000549970 TRDNQ13061 729 aa19.09■□□□□ 0.65
VPS29-207ENST00000549970 TMEM63BQ5T3F8 832 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms