RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 SH2B2O14492 632 aaPredicted RBP9.88□□□□□ -0.83
VPS29-203ENST00000546588 LARGE1O95461 756 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 CPA1P15085 419 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 CRKP46108 304 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 PRELPP51888 382 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 ZNF280AP59817 542 aaPredicted RBP9.88□□□□□ -0.83
VPS29-203ENST00000546588 TRDNQ13061 729 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 ME3Q16798 604 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 PPP1R26Q5T8A7 1209 aaPredicted RBP9.88□□□□□ -0.83
VPS29-203ENST00000546588 TNS4Q8IZW8 715 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 SMARCC2Q8TAQ2 1214 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 IGDCC4Q8TDY8 1250 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 GTF3C6Q969F1 213 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 CHMP4CQ96CF2 233 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 CNTNAP3BQ96NU0 1288 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 LLPHQ9BRT6 129 aaKnown RBP9.88□□□□□ -0.83
VPS29-203ENST00000546588 CNTNAP3Q9BZ76 1288 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 KCNQ5Q9NR82 932 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 SERTAD1Q9UHV2 236 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 DCTN4Q9UJW0 460 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 TPCN1Q9ULQ1 816 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 ANGEL1Q9UNK9 670 aaKnown RBP9.88□□□□□ -0.83
VPS29-203ENST00000546588 JAG2Q9Y219 1238 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 PARP14Q460N5 1801 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 PHIPQ8WWQ0 1821 aa9.88□□□□□ -0.83
VPS29-203ENST00000546588 SLC35F4A4IF30 521 aa9.87□□□□□ -0.83
VPS29-203ENST00000546588 PFKFB2O60825 505 aa9.87□□□□□ -0.83
VPS29-203ENST00000546588 APPP05067 770 aa9.87□□□□□ -0.83
VPS29-203ENST00000546588 GDF10P55107 478 aa9.87□□□□□ -0.83
VPS29-203ENST00000546588 HAND2P61296 217 aa9.87□□□□□ -0.83
VPS29-203ENST00000546588 CBLBQ13191 982 aa9.87□□□□□ -0.83
VPS29-203ENST00000546588 SEC23AQ15436 765 aa9.87□□□□□ -0.83
VPS29-203ENST00000546588 MFSD6Q6ZSS7 791 aa9.87□□□□□ -0.83
VPS29-203ENST00000546588 Q6ZUG5 572 aa9.87□□□□□ -0.83
VPS29-203ENST00000546588 C16orf86Q6ZW13 317 aa9.87□□□□□ -0.83
VPS29-203ENST00000546588 RALYLQ86SE5 291 aaKnown RBP9.87□□□□□ -0.83
VPS29-203ENST00000546588 NIM1KQ8IY84 436 aa9.87□□□□□ -0.83
VPS29-203ENST00000546588 IPO4Q8TEX9 1081 aaKnown RBP9.87□□□□□ -0.83
VPS29-203ENST00000546588 ANKS1AQ92625 1134 aa9.87□□□□□ -0.83
VPS29-203ENST00000546588 DPF2Q92785 391 aa9.87□□□□□ -0.83
VPS29-203ENST00000546588 FHDC1Q9C0D6 1143 aaPredicted RBP9.87□□□□□ -0.83
VPS29-203ENST00000546588 OSBPL5Q9H0X9 879 aaPredicted RBP9.87□□□□□ -0.83
VPS29-203ENST00000546588 ZNF277Q9NRM2 450 aaPredicted RBP9.87□□□□□ -0.83
VPS29-203ENST00000546588 TMPRSS4Q9NRS4 437 aa9.87□□□□□ -0.83
VPS29-203ENST00000546588 TCP11L1Q9NUJ3 509 aa9.87□□□□□ -0.83
VPS29-203ENST00000546588 CHMP5Q9NZZ3 219 aa9.87□□□□□ -0.83
VPS29-203ENST00000546588 TMEM229AB2RXF0 380 aa9.86□□□□□ -0.83
VPS29-203ENST00000546588 PSMD14O00487 310 aa9.86□□□□□ -0.83
VPS29-203ENST00000546588 PRC1O43663 620 aa9.86□□□□□ -0.83
VPS29-203ENST00000546588 ENTPD3O75355 529 aa9.86□□□□□ -0.83
VPS29-203ENST00000546588 RASSF7Q02833 373 aa9.86□□□□□ -0.83
VPS29-203ENST00000546588 CXCL9Q07325 125 aa9.86□□□□□ -0.83
VPS29-203ENST00000546588 RAB3GAP1Q15042 981 aa9.86□□□□□ -0.83
VPS29-203ENST00000546588 PPP2R5BQ15173 497 aa9.86□□□□□ -0.83
VPS29-203ENST00000546588 CDC42EP5Q6NZY7 148 aa9.86□□□□□ -0.83
VPS29-203ENST00000546588 CYB5R4Q7L1T6 521 aa9.86□□□□□ -0.83
VPS29-203ENST00000546588 ZSCAN29Q8IWY8 852 aaPredicted RBP9.86□□□□□ -0.83
VPS29-203ENST00000546588 CCDC155Q8N6L0 562 aa9.86□□□□□ -0.83
VPS29-203ENST00000546588 ESR2Q92731 530 aa9.86□□□□□ -0.83
VPS29-203ENST00000546588 SYT17Q9BSW7 474 aa9.86□□□□□ -0.83
VPS29-203ENST00000546588 COL25A1Q9BXS0 654 aaPredicted RBP9.86□□□□□ -0.83
VPS29-203ENST00000546588 DHX36Q9H2U1 1008 aaKnown RBP9.86□□□□□ -0.83
VPS29-203ENST00000546588 LY9Q9HBG7 655 aa9.86□□□□□ -0.83
VPS29-203ENST00000546588 ZSWIM5Q9P217 1185 aa9.86□□□□□ -0.83
VPS29-203ENST00000546588 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.86□□□□□ -0.83
VPS29-203ENST00000546588 OTOFQ9HC10 1997 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 B4E1Z4 1266 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 BACH1O14867 736 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 SLC3A2P08195 630 aaKnown RBP9.85□□□□□ -0.83
VPS29-203ENST00000546588 IGFBP4P22692 258 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 PDIA3P30101 505 aaKnown RBP9.85□□□□□ -0.83
VPS29-203ENST00000546588 ERVK-9P63128 1117 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 PDE4BQ07343 736 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 RNFT1Q5M7Z0 435 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 ZNF385CQ66K41 422 aaPredicted RBP9.85□□□□□ -0.83
VPS29-203ENST00000546588 CIAPIN1Q6FI81 312 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 TEX11Q8IYF3 940 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 CNPY4Q8N129 248 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 TMTC2Q8N394 836 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 TMEM151AQ8N4L1 468 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 TGFBRAP1Q8WUH2 860 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 BRF1Q92994 677 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 MAP3K14Q99558 947 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 MXD3Q9BW11 206 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 DDX4Q9NQI0 724 aaKnown RBP9.85□□□□□ -0.83
VPS29-203ENST00000546588 PGPEP1Q9NXJ5 209 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 MCM9Q9NXL9 1143 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 SWAP70Q9UH65 585 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 BCS1LQ9Y276 419 aa9.85□□□□□ -0.83
VPS29-203ENST00000546588 POLR2AP24928 1970 aaKnown RBP9.84□□□□□ -0.83
VPS29-203ENST00000546588 PTPRFP10586 1907 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 FIGNL2A6NMB9 653 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 SLURP2P0DP57 97 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 USP5P45974 858 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 NUCB2P80303 420 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 ARHGAP4P98171 946 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 MAP3K10Q02779 954 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 SCRN1Q12765 414 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 TNIP1Q15025 636 aa9.84□□□□□ -0.83
VPS29-203ENST00000546588 CCDC178Q5BJE1 867 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms