RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 NSUN4Q96CB9 384 aaKnown RBP17.39■□□□□ 0.37
CUX1-211ENST00000546411 NOX5Q96PH1 765 aa17.39■□□□□ 0.37
CUX1-211ENST00000546411 STK36Q9NRP7 1315 aa17.39■□□□□ 0.37
CUX1-211ENST00000546411 WTIPA6NIX2 430 aaPredicted RBP17.39■□□□□ 0.37
CUX1-211ENST00000546411 USP17L5A8MUK1 530 aa17.39■□□□□ 0.37
CUX1-211ENST00000546411 BACH1O14867 736 aa17.39■□□□□ 0.37
CUX1-211ENST00000546411 TRAF1Q13077 416 aa17.39■□□□□ 0.37
CUX1-211ENST00000546411 ASIC2Q16515 512 aa17.39■□□□□ 0.37
CUX1-211ENST00000546411 JDP2Q8WYK2 163 aa17.39■□□□□ 0.37
CUX1-211ENST00000546411 DISC1Q9NRI5 854 aa17.39■□□□□ 0.37
CUX1-211ENST00000546411 FBXO2Q9UK22 296 aaPredicted RBP17.39■□□□□ 0.37
CUX1-211ENST00000546411 CEP104O60308 925 aa17.38■□□□□ 0.37
CUX1-211ENST00000546411 CXCR5P32302 372 aa17.38■□□□□ 0.37
CUX1-211ENST00000546411 FRMD4BQ9Y2L6 1034 aa17.38■□□□□ 0.37
CUX1-211ENST00000546411 ARHGEF35A5YM69 484 aa17.38■□□□□ 0.37
CUX1-211ENST00000546411 POTEMA6NI47 508 aa17.38■□□□□ 0.37
CUX1-211ENST00000546411 PFKFB3Q16875 520 aaPredicted RBP17.38■□□□□ 0.37
CUX1-211ENST00000546411 P2RX5Q93086 422 aa17.38■□□□□ 0.37
CUX1-211ENST00000546411 CEP95Q96GE4 821 aa17.38■□□□□ 0.37
CUX1-211ENST00000546411 OSBPL5Q9H0X9 879 aaPredicted RBP17.38■□□□□ 0.37
CUX1-211ENST00000546411 ARHGEF10LQ9HCE6 1279 aa17.38■□□□□ 0.37
CUX1-211ENST00000546411 CD209Q9NNX6 404 aa17.38■□□□□ 0.37
CUX1-211ENST00000546411 GJA3Q9Y6H8 435 aa17.38■□□□□ 0.37
CUX1-211ENST00000546411 PRCPP42785 496 aa17.38■□□□□ 0.37
CUX1-211ENST00000546411 CYP2J2P51589 502 aa17.38■□□□□ 0.37
CUX1-211ENST00000546411 CLCN6P51797 869 aa17.38■□□□□ 0.37
CUX1-211ENST00000546411 SFMBT2Q5VUG0 894 aa17.38■□□□□ 0.37
CUX1-211ENST00000546411 CDC23Q9UJX2 597 aa17.38■□□□□ 0.37
CUX1-211ENST00000546411 ANKRD62A6NC57 917 aa17.37■□□□□ 0.37
CUX1-211ENST00000546411 E4F1Q66K89 784 aaPredicted RBP17.37■□□□□ 0.37
CUX1-211ENST00000546411 PPP4R3AQ6IN85 833 aa17.37■□□□□ 0.37
CUX1-211ENST00000546411 TSGA10Q9BZW7 698 aa17.37■□□□□ 0.37
CUX1-211ENST00000546411 QTRT2Q9H974 415 aaKnown RBP17.37■□□□□ 0.37
CUX1-211ENST00000546411 THRAP3Q9Y2W1 955 aaKnown RBP17.37■□□□□ 0.37
CUX1-211ENST00000546411 PPEF1O14829 653 aaPredicted RBP17.37■□□□□ 0.37
CUX1-211ENST00000546411 EXOC3O60645 756 aa17.37■□□□□ 0.37
CUX1-211ENST00000546411 CCDC172P0C7W6 258 aa17.37■□□□□ 0.37
CUX1-211ENST00000546411 ABCB4P21439 1286 aa17.37■□□□□ 0.37
CUX1-211ENST00000546411 ALDH1B1P30837 517 aa17.37■□□□□ 0.37
CUX1-211ENST00000546411 SF3A3Q12874 501 aaKnown RBP eCLIP17.37■□□□□ 0.37
CUX1-211ENST00000546411 NKX1-1Q15270 411 aaPredicted RBP17.37■□□□□ 0.37
CUX1-211ENST00000546411 CFAP58Q5T655 872 aa17.37■□□□□ 0.37
CUX1-211ENST00000546411 CCDC25Q86WR0 208 aa17.37■□□□□ 0.37
CUX1-211ENST00000546411 TMEM260Q9NX78 707 aa17.37■□□□□ 0.37
CUX1-211ENST00000546411 CCZ1BP86790 482 aa17.37■□□□□ 0.37
CUX1-211ENST00000546411 CCZ1P86791 482 aaPredicted RBP17.37■□□□□ 0.37
CUX1-211ENST00000546411 GALNT17Q6IS24 598 aa17.37■□□□□ 0.37
CUX1-211ENST00000546411 C10orf67Q8IYJ2 551 aa17.37■□□□□ 0.37
CUX1-211ENST00000546411 HAUS4Q9H6D7 363 aa17.37■□□□□ 0.37
CUX1-211ENST00000546411 RIMS1Q86UR5 1692 aaKnown RBP17.37■□□□□ 0.37
CUX1-211ENST00000546411 HPDP32754 393 aaPredicted RBP17.36■□□□□ 0.37
CUX1-211ENST00000546411 CETN2P41208 172 aa17.36■□□□□ 0.37
CUX1-211ENST00000546411 NFIXQ14938 502 aa17.36■□□□□ 0.37
CUX1-211ENST00000546411 PNPLA7Q6ZV29 1317 aa17.36■□□□□ 0.37
CUX1-211ENST00000546411 GOLGA6L10A0A0M3HER8 536 aa17.36■□□□□ 0.37
CUX1-211ENST00000546411 SORBS3O60504 671 aa17.36■□□□□ 0.37
CUX1-211ENST00000546411 NTSR2O95665 410 aa17.36■□□□□ 0.37
CUX1-211ENST00000546411 ADAM9Q13443 819 aa17.36■□□□□ 0.37
CUX1-211ENST00000546411 DLGAP5Q15398 846 aa17.36■□□□□ 0.37
CUX1-211ENST00000546411 NT5C3AQ9H0P0 336 aa17.36■□□□□ 0.37
CUX1-211ENST00000546411 TTLL1O95922 423 aa17.36■□□□□ 0.37
CUX1-211ENST00000546411 FBXO11Q86XK2 927 aa17.36■□□□□ 0.37
CUX1-211ENST00000546411 HPS3Q969F9 1004 aa17.36■□□□□ 0.37
CUX1-211ENST00000546411 BBOX1O75936 387 aa17.35■□□□□ 0.37
CUX1-211ENST00000546411 CTNNA2P26232 953 aa17.35■□□□□ 0.37
CUX1-211ENST00000546411 RASSF7Q02833 373 aa17.35■□□□□ 0.37
CUX1-211ENST00000546411 TXNRD1Q16881 649 aa17.35■□□□□ 0.37
CUX1-211ENST00000546411 ARMCX3Q9UH62 379 aaPredicted RBP17.35■□□□□ 0.37
CUX1-211ENST00000546411 SMIM22K7EJ46 135 aa17.35■□□□□ 0.37
CUX1-211ENST00000546411 GAS7O60861 476 aa17.35■□□□□ 0.37
CUX1-211ENST00000546411 TCP11X2Q5H9J9 407 aa17.35■□□□□ 0.37
CUX1-211ENST00000546411 SEPT12Q8IYM1 358 aa17.35■□□□□ 0.37
CUX1-211ENST00000546411 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.35■□□□□ 0.378e-7■■■■■ 65.6
CUX1-211ENST00000546411 RWDD2AQ9UIY3 292 aa17.35■□□□□ 0.37
CUX1-211ENST00000546411 GABPB1Q06547 395 aaPredicted RBP17.35■□□□□ 0.37
CUX1-211ENST00000546411 SRGAP1Q7Z6B7 1085 aa17.35■□□□□ 0.37
CUX1-211ENST00000546411 ADAT2Q7Z6V5 191 aaKnown RBP17.35■□□□□ 0.37
CUX1-211ENST00000546411 PARD6BQ9BYG5 372 aa17.35■□□□□ 0.37
CUX1-211ENST00000546411 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.35■□□□□ 0.37
CUX1-211ENST00000546411 USP17L15C9J2P7 530 aa17.34■□□□□ 0.37
CUX1-211ENST00000546411 USP17L13C9JLJ4 530 aa17.34■□□□□ 0.37
CUX1-211ENST00000546411 USP17L11C9JVI0 530 aa17.34■□□□□ 0.37
CUX1-211ENST00000546411 USP17L18D6R9N7 530 aa17.34■□□□□ 0.37
CUX1-211ENST00000546411 USP17L22D6RA61 530 aa17.34■□□□□ 0.37
CUX1-211ENST00000546411 USP17L17D6RBQ6 530 aa17.34■□□□□ 0.37
CUX1-211ENST00000546411 USP17L19D6RCP7 530 aa17.34■□□□□ 0.37
CUX1-211ENST00000546411 USP17L20D6RJB6 530 aa17.34■□□□□ 0.37
CUX1-211ENST00000546411 MFAP3LO75121 409 aa17.34■□□□□ 0.37
CUX1-211ENST00000546411 USP17L24Q0WX57 530 aa17.34■□□□□ 0.37
CUX1-211ENST00000546411 USP17L6PQ6QN14 398 aa17.34■□□□□ 0.37
CUX1-211ENST00000546411 LINC00116Q8NCU8 138 aa17.34■□□□□ 0.37
CUX1-211ENST00000546411 PDE11AQ9HCR9 933 aa17.34■□□□□ 0.37
CUX1-211ENST00000546411 XRCC5P13010 732 aaKnown RBP17.34■□□□□ 0.37
CUX1-211ENST00000546411 ZNF579Q8NAF0 562 aaKnown RBP17.34■□□□□ 0.37
CUX1-211ENST00000546411 NAP1L4Q99733 375 aaKnown RBP17.34■□□□□ 0.37
CUX1-211ENST00000546411 TNFAIP3P21580 790 aa17.34■□□□□ 0.37
CUX1-211ENST00000546411 HOXA13P31271 388 aaPredicted RBP17.34■□□□□ 0.37
CUX1-211ENST00000546411 TUBB4BP68371 445 aa17.34■□□□□ 0.37
CUX1-211ENST00000546411 LMBR1Q8WVP7 490 aa17.34■□□□□ 0.37
CUX1-211ENST00000546411 WDR24Q96S15 920 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms