RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	CUL4A	Q13619	759 aa		11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	TRIM29	Q14134	588 aa		11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	WWC2	Q6AWC2	1192 aa		11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	NSMF	Q6X4W1	530 aa		11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	CHST13	Q8NET6	341 aa		11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	CFHR5	Q9BXR6	569 aa		11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	PORCN	Q9H237	461 aa		11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	MROH8	Q9H579	483 aa		11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	ACAD9	Q9H845	621 aa		11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	FBXO40	Q9UH90	709 aa		11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	KIF3A	Q9Y496	699 aa		11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	IVNS1ABP	Q9Y6Y0	642 aa		11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	STK36	Q9NRP7	1315 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	FKTN	O75072	461 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	GJB2	P29033	226 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	PSMC4	P43686	418 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	FCGRT	P55899	365 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	NLRP5	P59047	1200 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	KCTD2	Q14681	263 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	PKN1	Q16512	942 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	MCF2L2	Q86YR7	1114 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	ANKRD35	Q8N283	1001 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	JMY	Q8N9B5	988 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	SHCBP1	Q8NEM2	672 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	SMARCC2	Q8TAQ2	1214 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	CCDC12	Q8WUD4	166 aa	Predicted RBP	11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	CUL5	Q93034	780 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	AIFM3	Q96NN9	605 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	MMP19	Q99542	508 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	BARHL2	Q9NY43	387 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	VPS54	Q9P1Q0	977 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	PHIP	Q8WWQ0	1821 aa		11.7	□□□□□ -0.54
CPSF7-221	ENST00000543545	SMCO2	A6NFE2	343 aa		11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	hCG_1984214	I3L0E3	225 aa		11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	STXBP3	O00186	592 aa		11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	TNPO2	O14787	897 aa	Known RBP	11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	HSPA1A	P0DMV8	641 aa	Known RBP	11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	HSPA1B	P0DMV9	641 aa	Known RBP	11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	FCER1A	P12319	257 aa		11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	FDPS	P14324	419 aa	Known RBP	11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	ARHGEF6	Q15052	776 aa		11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	MUM1L1	Q5H9M0	696 aa		11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	PLEKHH3	Q7Z736	793 aa		11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	ZNF713	Q8N859	430 aa	Predicted RBP	11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	CCDC148	Q8NFR7	591 aa		11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	ZNF296	Q8WUU4	475 aa	Predicted RBP	11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	ERO1A	Q96HE7	468 aa		11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	INTS4	Q96HW7	963 aa	Known RBP	11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	C8orf76	Q96K31	380 aa		11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	PSTPIP2	Q9H939	334 aa		11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	C6orf50	Q9HD87	102 aa		11.69	□□□□□ -0.54
CPSF7-221	ENST00000543545	GCOM1	H8Y6P7	765 aa	Predicted RBP	11.68	□□□□□ -0.54
CPSF7-221	ENST00000543545	NFIB	O00712	420 aa		11.68	□□□□□ -0.54
CPSF7-221	ENST00000543545	CFB	P00751	764 aa		11.68	□□□□□ -0.54
CPSF7-221	ENST00000543545	POLR2M	P0CAP2	368 aa		11.68	□□□□□ -0.54
CPSF7-221	ENST00000543545	CALML3	P27482	149 aa		11.68	□□□□□ -0.54
CPSF7-221	ENST00000543545	ADCY7	P51828	1080 aa		11.68	□□□□□ -0.54
CPSF7-221	ENST00000543545	MRPL12	P52815	198 aa	Known RBP	11.68	□□□□□ -0.54
CPSF7-221	ENST00000543545	LACTB	P83111	547 aa	Predicted RBP	11.68	□□□□□ -0.54
CPSF7-221	ENST00000543545	GUCY1B3	Q02153	619 aa		11.68	□□□□□ -0.54
CPSF7-221	ENST00000543545	PPP1R18	Q6NYC8	613 aa		11.68	□□□□□ -0.54
CPSF7-221	ENST00000543545	RNF207	Q6ZRF8	634 aa		11.68	□□□□□ -0.54
CPSF7-221	ENST00000543545	GPR142	Q7Z601	462 aa		11.68	□□□□□ -0.54
CPSF7-221	ENST00000543545	CD99L2	Q8TCZ2	262 aa		11.68	□□□□□ -0.54
CPSF7-221	ENST00000543545	CLEC4D	Q8WXI8	215 aa		11.68	□□□□□ -0.54
CPSF7-221	ENST00000543545	KCNJ14	Q9UNX9	436 aa		11.68	□□□□□ -0.54
CPSF7-221	ENST00000543545	MYH4	Q9Y623	1939 aa		11.68	□□□□□ -0.54
CPSF7-221	ENST00000543545		H3BQV1	296 aa		11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	POTEB2	H3BUK9	544 aa		11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	FOXN1	O15353	648 aa		11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	STRN	O43815	780 aa		11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	PTPRE	P23469	700 aa		11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	HOXD10	P28358	340 aa		11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	GNA11	P29992	359 aa		11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	HOXA13	P31271	388 aa	Predicted RBP	11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	CTCF	P49711	727 aa	Predicted RBP	11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	BAAT	Q14032	418 aa	Predicted RBP	11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	SAFB	Q15424	915 aa	Known RBP eCLIP	11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	IFFO2	Q5TF58	517 aa		11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	LARP1B	Q659C4	914 aa	Known RBP	11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	TYW1B	Q6NUM6	668 aa		11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	DPP9	Q86TI2	863 aa		11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	FCHSD1	Q86WN1	690 aa		11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	TBC1D5	Q92609	795 aa		11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	ARHGAP39	Q9C0H5	1083 aa		11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	GLT8D2	Q9H1C3	349 aa		11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	BRMS1	Q9HCU9	246 aa		11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	SH3GLB2	Q9NR46	395 aa		11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	GJB4	Q9NTQ9	266 aa		11.67	□□□□□ -0.54
CPSF7-221	ENST00000543545	SLC15A5	A6NIM6	579 aa		11.66	□□□□□ -0.54
CPSF7-221	ENST00000543545	PGK2	P07205	417 aa		11.66	□□□□□ -0.54
CPSF7-221	ENST00000543545	PDC	P20941	246 aa		11.66	□□□□□ -0.54
CPSF7-221	ENST00000543545	ADORA2A	P29274	412 aa		11.66	□□□□□ -0.54
CPSF7-221	ENST00000543545	RPS6	P62753	249 aa	Known RBP	11.66	□□□□□ -0.54
CPSF7-221	ENST00000543545	GNL2	Q13823	731 aa	Known RBP	11.66	□□□□□ -0.54
CPSF7-221	ENST00000543545	NOM1	Q5C9Z4	860 aa	Known RBP	11.66	□□□□□ -0.54
CPSF7-221	ENST00000543545	KRT40	Q6A162	431 aa		11.66	□□□□□ -0.54
CPSF7-221	ENST00000543545	USP17L6P	Q6QN14	398 aa		11.66	□□□□□ -0.54
CPSF7-221	ENST00000543545	RGS22	Q8NE09	1264 aa		11.66	□□□□□ -0.54
CPSF7-221	ENST00000543545	BICD2	Q8TD16	824 aa		11.66	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms