RNA–Protein interactions for RNA: ENST00000540963.1

CHFR-218, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 2

Gene CHFR, Length 875 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-218	ENST00000540963	CYP2C18	P33260	490 aa		31.87	■■■□□ 2.69
CHFR-218	ENST00000540963	TLK2	Q86UE8	772 aa		31.87	■■■□□ 2.69
CHFR-218	ENST00000540963	STAG1	Q8WVM7	1258 aa		31.87	■■■□□ 2.69
CHFR-218	ENST00000540963	RNF146	Q9NTX7	359 aa		31.87	■■■□□ 2.69
CHFR-218	ENST00000540963	ZNF536	O15090	1300 aa		31.86	■■■□□ 2.69
CHFR-218	ENST00000540963	BEX3	Q00994	111 aa		31.86	■■■□□ 2.69
CHFR-218	ENST00000540963	ITGA7	Q13683	1181 aa		31.86	■■■□□ 2.69
CHFR-218	ENST00000540963	FSCN1	Q16658	493 aa	Known RBP	31.86	■■■□□ 2.69
CHFR-218	ENST00000540963	CXCL17	Q6UXB2	119 aa		31.86	■■■□□ 2.69
CHFR-218	ENST00000540963	NOL8	Q76FK4	1167 aa	Known RBP	31.86	■■■□□ 2.69
CHFR-218	ENST00000540963	AP5M1	Q9H0R1	490 aa		31.86	■■■□□ 2.69
CHFR-218	ENST00000540963	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	31.85	■■■□□ 2.69
CHFR-218	ENST00000540963	SOWAHB	A6NEL2	793 aa		31.85	■■■□□ 2.69
CHFR-218	ENST00000540963	IQSEC1	Q6DN90	963 aa		31.85	■■■□□ 2.69
CHFR-218	ENST00000540963	ASB2	Q96Q27	587 aa		31.85	■■■□□ 2.69
CHFR-218	ENST00000540963		M0R2C6	588 aa		31.84	■■■□□ 2.69
CHFR-218	ENST00000540963	SLC1A4	P43007	532 aa		31.84	■■■□□ 2.69
CHFR-218	ENST00000540963	AGBL1	Q96MI9	1066 aa		31.84	■■■□□ 2.69
CHFR-218	ENST00000540963	SLC28A3	Q9HAS3	691 aa		31.84	■■■□□ 2.69
CHFR-218	ENST00000540963	TFAP4	Q01664	338 aa		31.83	■■■□□ 2.69
CHFR-218	ENST00000540963	TRERF1	Q96PN7	1200 aa		31.83	■■■□□ 2.69
CHFR-218	ENST00000540963	DCTPP1	Q9H773	170 aa		31.83	■■■□□ 2.69
CHFR-218	ENST00000540963	CXXC1	Q9P0U4	656 aa	Predicted RBP	31.83	■■■□□ 2.69
CHFR-218	ENST00000540963	MRPS5	P82675	430 aa	Known RBP	31.82	■■■□□ 2.68
CHFR-218	ENST00000540963	ADGRE1	Q14246	886 aa		31.82	■■■□□ 2.68
CHFR-218	ENST00000540963	RPUSD2	Q8IZ73	545 aa	Known RBP	31.82	■■■□□ 2.68
CHFR-218	ENST00000540963	NOC4L	Q9BVI4	516 aa	Known RBP	31.82	■■■□□ 2.68
CHFR-218	ENST00000540963	NCOR1	O75376	2440 aa		31.81	■■■□□ 2.68
CHFR-218	ENST00000540963	CHD7	Q9P2D1	2997 aa		31.81	■■■□□ 2.68
CHFR-218	ENST00000540963	GRIN2D	O15399	1336 aa		31.81	■■■□□ 2.68
CHFR-218	ENST00000540963	SMPD1	P17405	629 aa		31.81	■■■□□ 2.68
CHFR-218	ENST00000540963	IK	Q13123	557 aa	Predicted RBP	31.81	■■■□□ 2.68
CHFR-218	ENST00000540963	PPM1E	Q8WY54	764 aa		31.81	■■■□□ 2.68
CHFR-218	ENST00000540963	RCAN3	Q9UKA8	241 aa		31.81	■■■□□ 2.68
CHFR-218	ENST00000540963	DYNC1LI2	O43237	492 aa	Predicted RBP	31.8	■■■□□ 2.68
CHFR-218	ENST00000540963	PPARA	Q07869	468 aa		31.8	■■■□□ 2.68
CHFR-218	ENST00000540963	RCSD1	Q6JBY9	416 aa		31.8	■■■□□ 2.68
CHFR-218	ENST00000540963	TAPT1	Q6NXT6	567 aa		31.8	■■■□□ 2.68
CHFR-218	ENST00000540963	MORC4	Q8TE76	937 aa		31.8	■■■□□ 2.68
CHFR-218	ENST00000540963	NAPB	Q9H115	298 aa		31.8	■■■□□ 2.68
CHFR-218	ENST00000540963	VTA1	Q9NP79	307 aa		31.8	■■■□□ 2.68
CHFR-218	ENST00000540963	CYP39A1	Q9NYL5	469 aa		31.8	■■■□□ 2.68
CHFR-218	ENST00000540963	ISY1	Q9ULR0	285 aa	Known RBP	31.8	■■■□□ 2.68
CHFR-218	ENST00000540963	ALAS1	P13196	640 aa		31.79	■■■□□ 2.68
CHFR-218	ENST00000540963	MCC	P23508	829 aa		31.79	■■■□□ 2.68
CHFR-218	ENST00000540963	NKX2-4	Q9H2Z4	354 aa		31.79	■■■□□ 2.68
CHFR-218	ENST00000540963	TTC41P	Q6P2S7	1318 aa		31.78	■■■□□ 2.68
CHFR-218	ENST00000540963	LOC102724159	A0A0B4J2E5	919 aa		31.78	■■■□□ 2.68
CHFR-218	ENST00000540963	B4GALT4	O60513	344 aa		31.78	■■■□□ 2.68
CHFR-218	ENST00000540963	PWP2	Q15269	919 aa	Known RBP	31.78	■■■□□ 2.68
CHFR-218	ENST00000540963	OTOP2	Q7RTS6	562 aa		31.78	■■■□□ 2.68
CHFR-218	ENST00000540963	UMODL1	Q5DID0	1318 aa		31.77	■■■□□ 2.68
CHFR-218	ENST00000540963	LCT	P09848	1927 aa		31.77	■■■□□ 2.68
CHFR-218	ENST00000540963	PFKM	P08237	780 aa		31.77	■■■□□ 2.68
CHFR-218	ENST00000540963	WNT8A	Q9H1J5	351 aa		31.77	■■■□□ 2.68
CHFR-218	ENST00000540963	PRR12	Q9ULL5	1215 aa		31.77	■■■□□ 2.68
CHFR-218	ENST00000540963	YBX2	Q9Y2T7	364 aa	Known RBP	31.77	■■■□□ 2.68
CHFR-218	ENST00000540963	PCDHA11	Q9Y5I1	949 aa		31.77	■■■□□ 2.68
CHFR-218	ENST00000540963	SLC4A7	Q9Y6M7	1214 aa		31.77	■■■□□ 2.68
CHFR-218	ENST00000540963	COL9A1	P20849	921 aa		31.76	■■■□□ 2.67
CHFR-218	ENST00000540963	IGFBP4	P22692	258 aa		31.76	■■■□□ 2.67
CHFR-218	ENST00000540963	CCL23	P55773	120 aa		31.76	■■■□□ 2.67
CHFR-218	ENST00000540963	TSHZ3	Q63HK5	1081 aa		31.76	■■■□□ 2.67
CHFR-218	ENST00000540963	ADAMTS19	Q8TE59	1207 aa		31.76	■■■□□ 2.67
CHFR-218	ENST00000540963	TRPV6	Q9H1D0	765 aa		31.76	■■■□□ 2.67
CHFR-218	ENST00000540963	TSPYL2	Q9H2G4	693 aa	Predicted RBP	31.76	■■■□□ 2.67
CHFR-218	ENST00000540963	PDGFC	Q9NRA1	345 aa		31.76	■■■□□ 2.67
CHFR-218	ENST00000540963	STX8	Q9UNK0	236 aa		31.76	■■■□□ 2.67
CHFR-218	ENST00000540963	ERC2	O15083	957 aa		31.75	■■■□□ 2.67
CHFR-218	ENST00000540963	SUPT20HL2	P0C7V6	817 aa		31.75	■■■□□ 2.67
CHFR-218	ENST00000540963	FBXO16	Q8IX29	292 aa	Predicted RBP	31.75	■■■□□ 2.67
CHFR-218	ENST00000540963	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	31.75	■■■□□ 2.67
CHFR-218	ENST00000540963	DUSP28	Q4G0W2	176 aa		31.74	■■■□□ 2.67
CHFR-218	ENST00000540963	MUM1L1	Q5H9M0	696 aa		31.74	■■■□□ 2.67
CHFR-218	ENST00000540963	ZMYM1	Q5SVZ6	1142 aa		31.74	■■■□□ 2.67
CHFR-218	ENST00000540963	KCTD1	Q719H9	257 aa		31.74	■■■□□ 2.67
CHFR-218	ENST00000540963	SEC62	Q99442	399 aa	Known RBP	31.74	■■■□□ 2.67
CHFR-218	ENST00000540963	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	31.74	■■■□□ 2.67
CHFR-218	ENST00000540963	ADD3	Q9UEY8	706 aa	Known RBP	31.74	■■■□□ 2.67
CHFR-218	ENST00000540963	TSPY2	A6NKD2	308 aa		31.73	■■■□□ 2.67
CHFR-218	ENST00000540963	ICAM1	P05362	532 aa		31.73	■■■□□ 2.67
CHFR-218	ENST00000540963	NOV	P48745	357 aa		31.73	■■■□□ 2.67
CHFR-218	ENST00000540963	IL27	Q8NEV9	243 aa		31.73	■■■□□ 2.67
CHFR-218	ENST00000540963	POLR3E	Q9NVU0	708 aa		31.73	■■■□□ 2.67
CHFR-218	ENST00000540963	CCPG1	Q9ULG6	757 aa		31.73	■■■□□ 2.67
CHFR-218	ENST00000540963	CCDC85B	Q15834	202 aa	Predicted RBP	31.72	■■■□□ 2.67
CHFR-218	ENST00000540963	C20orf194	Q5TEA3	1177 aa		31.72	■■■□□ 2.67
CHFR-218	ENST00000540963	PPP2R2D	Q66LE6	453 aa		31.72	■■■□□ 2.67
CHFR-218	ENST00000540963	KIAA1211	Q6ZU35	1233 aa		31.72	■■■□□ 2.67
CHFR-218	ENST00000540963	EEPD1	Q7L9B9	569 aa		31.72	■■■□□ 2.67
CHFR-218	ENST00000540963	UHRF1	Q96T88	793 aa	Predicted RBP	31.72	■■■□□ 2.67
CHFR-218	ENST00000540963	IL17RB	Q9NRM6	502 aa		31.72	■■■□□ 2.67
CHFR-218	ENST00000540963	PSMC6	P62333	389 aa		31.71	■■■□□ 2.67
CHFR-218	ENST00000540963	NSMF	Q6X4W1	530 aa		31.71	■■■□□ 2.67
CHFR-218	ENST00000540963	DCAF4	Q8WV16	495 aa		31.71	■■■□□ 2.67
CHFR-218	ENST00000540963	PI4K2B	Q8TCG2	481 aa		31.7	■■■□□ 2.67
CHFR-218	ENST00000540963	VWCE	Q96DN2	955 aa		31.7	■■■□□ 2.67
CHFR-218	ENST00000540963	FSD1	Q9BTV5	496 aa		31.7	■■■□□ 2.67
CHFR-218	ENST00000540963	RANBP17	Q9H2T7	1088 aa	Known RBP	31.7	■■■□□ 2.67
CHFR-218	ENST00000540963	TRANK1	O15050	2925 aa		31.69	■■■□□ 2.66

Retrieved 100 of 20,778 RNA–protein pairs in 32 ms