RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 MAD2L2Q9UI95 211 aa16.6■□□□□ 0.25
USP28-209ENST00000540925 H0YGN5 161 aa16.59■□□□□ 0.25
USP28-209ENST00000540925 IFIT3O14879 490 aaKnown RBP16.59■□□□□ 0.25
USP28-209ENST00000540925 ARMCX2Q7L311 632 aa16.59■□□□□ 0.25
USP28-209ENST00000540925 CHST3Q7LGC8 479 aa16.59■□□□□ 0.25
USP28-209ENST00000540925 CCDC144CPQ8IYA2 1237 aa16.59■□□□□ 0.25
USP28-209ENST00000540925 MORC4Q8TE76 937 aa16.59■□□□□ 0.25
USP28-209ENST00000540925 JMJD4Q9H9V9 463 aa16.59■□□□□ 0.25
USP28-209ENST00000540925 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.59■□□□□ 0.25
USP28-209ENST00000540925 CNPY2Q9Y2B0 182 aa16.59■□□□□ 0.25
USP28-209ENST00000540925 A0A0C4DFX4 3053 aa16.59■□□□□ 0.25
USP28-209ENST00000540925 ADCY6O43306 1168 aa16.58■□□□□ 0.24
USP28-209ENST00000540925 AKR1A1P14550 325 aa16.58■□□□□ 0.24
USP28-209ENST00000540925 ACVR2BQ13705 512 aa16.58■□□□□ 0.24
USP28-209ENST00000540925 GRM4Q14833 912 aa16.58■□□□□ 0.24
USP28-209ENST00000540925 CDC37Q16543 378 aaPredicted RBP16.58■□□□□ 0.24
USP28-209ENST00000540925 TSGA10IPQ3SY00 556 aa16.58■□□□□ 0.24
USP28-209ENST00000540925 ANO1Q5XXA6 986 aa16.58■□□□□ 0.24
USP28-209ENST00000540925 RGS22Q8NE09 1264 aa16.58■□□□□ 0.24
USP28-209ENST00000540925 DPF3Q92784 378 aa16.58■□□□□ 0.24
USP28-209ENST00000540925 MAF1Q9H063 256 aa16.58■□□□□ 0.24
USP28-209ENST00000540925 ABHD16BQ9H3Z7 469 aa16.58■□□□□ 0.24
USP28-209ENST00000540925 LY9Q9HBG7 655 aa16.58■□□□□ 0.24
USP28-209ENST00000540925 TRIOBPQ9H2D6 2365 aa16.57■□□□□ 0.24
USP28-209ENST00000540925 ADAMTS4O75173 837 aa16.57■□□□□ 0.24
USP28-209ENST00000540925 BAATQ14032 418 aaPredicted RBP16.57■□□□□ 0.24
USP28-209ENST00000540925 WTAPQ15007 396 aa16.57■□□□□ 0.24
USP28-209ENST00000540925 LRRC41Q15345 812 aa16.57■□□□□ 0.24
USP28-209ENST00000540925 QRICH1Q2TAL8 776 aa16.57■□□□□ 0.24
USP28-209ENST00000540925 TMEM67Q5HYA8 995 aa16.57■□□□□ 0.24
USP28-209ENST00000540925 NSMFQ6X4W1 530 aa16.57■□□□□ 0.24
USP28-209ENST00000540925 ARRDC4Q8NCT1 418 aa16.57■□□□□ 0.24
USP28-209ENST00000540925 PURBQ96QR8 312 aaKnown RBP16.57■□□□□ 0.24
USP28-209ENST00000540925 GPHNQ9NQX3 736 aaPredicted RBP16.57■□□□□ 0.24
USP28-209ENST00000540925 PPP4R2Q9NY27 417 aa16.57■□□□□ 0.24
USP28-209ENST00000540925 LOC102724159A0A0B4J2E5 919 aa16.56■□□□□ 0.24
USP28-209ENST00000540925 ASB14A6NK59 587 aa16.56■□□□□ 0.24
USP28-209ENST00000540925 KLRF2D3W0D1 207 aa16.56■□□□□ 0.24
USP28-209ENST00000540925 PRC1O43663 620 aa16.56■□□□□ 0.24
USP28-209ENST00000540925 RARBP10826 455 aa16.56■□□□□ 0.24
USP28-209ENST00000540925 NKX3-2P78367 333 aa16.56■□□□□ 0.24
USP28-209ENST00000540925 SART3Q15020 963 aaKnown RBP16.56■□□□□ 0.24
USP28-209ENST00000540925 PWP2Q15269 919 aaKnown RBP16.56■□□□□ 0.24
USP28-209ENST00000540925 LRRC26Q2I0M4 334 aa16.56■□□□□ 0.24
USP28-209ENST00000540925 GJC2Q5T442 439 aaPredicted RBP16.56■□□□□ 0.24
USP28-209ENST00000540925 SLC30A10Q6XR72 485 aa16.56■□□□□ 0.24
USP28-209ENST00000540925 KCNB2Q92953 911 aa16.56■□□□□ 0.24
USP28-209ENST00000540925 LENG1Q96BZ8 264 aaPredicted RBP16.56■□□□□ 0.24
USP28-209ENST00000540925 MAP3K14Q99558 947 aa16.56■□□□□ 0.24
USP28-209ENST00000540925 PRO3102Q9H379 93 aa16.56■□□□□ 0.24
USP28-209ENST00000540925 RIOX1Q9H6W3 641 aa16.56■□□□□ 0.24
USP28-209ENST00000540925 LAMA3Q16787 3333 aa16.55■□□□□ 0.24
USP28-209ENST00000540925 ERICH2A1L162 156 aa16.55■□□□□ 0.24
USP28-209ENST00000540925 SH2B2O14492 632 aaPredicted RBP16.55■□□□□ 0.24
USP28-209ENST00000540925 CYTH3O43739 400 aa16.55■□□□□ 0.24
USP28-209ENST00000540925 EVI5O60447 810 aa16.55■□□□□ 0.24
USP28-209ENST00000540925 PPP1R11O60927 126 aaPredicted RBP16.55■□□□□ 0.24
USP28-209ENST00000540925 MCM5P33992 734 aa16.55■□□□□ 0.24
USP28-209ENST00000540925 LIFRP42702 1097 aa16.55■□□□□ 0.24
USP28-209ENST00000540925 GHRHRQ02643 423 aa16.55■□□□□ 0.24
USP28-209ENST00000540925 SNX17Q15036 470 aa16.55■□□□□ 0.24
USP28-209ENST00000540925 CCDC144BQ3MJ40 725 aa16.55■□□□□ 0.24
USP28-209ENST00000540925 CCSAPQ6IQ19 270 aaPredicted RBP16.55■□□□□ 0.24
USP28-209ENST00000540925 CASC1Q6TDU7 716 aa16.55■□□□□ 0.24
USP28-209ENST00000540925 RASEFQ8IZ41 740 aa16.55■□□□□ 0.24
USP28-209ENST00000540925 KLHDC9Q8NEP7 349 aa16.55■□□□□ 0.24
USP28-209ENST00000540925 XPNPEP3Q9NQH7 507 aa16.55■□□□□ 0.24
USP28-209ENST00000540925 FAM184BQ9ULE4 1060 aa16.55■□□□□ 0.24
USP28-209ENST00000540925 NR2E3Q9Y5X4 410 aa16.55■□□□□ 0.24
USP28-209ENST00000540925 DDX49Q9Y6V7 483 aaKnown RBP16.55■□□□□ 0.24
USP28-209ENST00000540925 ABCB11O95342 1321 aa16.54■□□□□ 0.24
USP28-209ENST00000540925 SYNRGQ9UMZ2 1314 aa16.54■□□□□ 0.24
USP28-209ENST00000540925 OPLAHO14841 1288 aa16.54■□□□□ 0.24
USP28-209ENST00000540925 DUSP11O75319 330 aaKnown RBP16.54■□□□□ 0.24
USP28-209ENST00000540925 EDNRBP24530 442 aa16.54■□□□□ 0.24
USP28-209ENST00000540925 ALDH5A1P51649 535 aaPredicted RBP16.54■□□□□ 0.24
USP28-209ENST00000540925 RPS6P62753 249 aaKnown RBP16.54■□□□□ 0.24
USP28-209ENST00000540925 TAPT1Q6NXT6 567 aa16.54■□□□□ 0.24
USP28-209ENST00000540925 TMEM87BQ96K49 555 aa16.54■□□□□ 0.24
USP28-209ENST00000540925 UPF3AQ9H1J1 476 aaKnown RBP16.54■□□□□ 0.24
USP28-209ENST00000540925 ZHX1Q9UKY1 873 aaPredicted RBP16.54■□□□□ 0.24
USP28-209ENST00000540925 PHF24Q9UPV7 400 aa16.54■□□□□ 0.24
USP28-209ENST00000540925 KBTBD13C9JR72 458 aa16.53■□□□□ 0.24
USP28-209ENST00000540925 ZBTB5O15062 677 aa16.53■□□□□ 0.24
USP28-209ENST00000540925 CTAGE5O15320 804 aa16.53■□□□□ 0.24
USP28-209ENST00000540925 DDAH1O94760 285 aa16.53■□□□□ 0.24
USP28-209ENST00000540925 PGK1P00558 417 aa16.53■□□□□ 0.24
USP28-209ENST00000540925 CENPBP07199 599 aaPredicted RBP16.53■□□□□ 0.24
USP28-209ENST00000540925 CST5P28325 142 aaPredicted RBP16.53■□□□□ 0.24
USP28-209ENST00000540925 EXOSC10Q01780 885 aaKnown RBP16.53■□□□□ 0.24
USP28-209ENST00000540925 USH1GQ495M9 461 aa16.53■□□□□ 0.24
USP28-209ENST00000540925 RNF20Q5VTR2 975 aa16.53■□□□□ 0.24
USP28-209ENST00000540925 C1orf53Q5VUE5 145 aa16.53■□□□□ 0.24
USP28-209ENST00000540925 RNF207Q6ZRF8 634 aa16.53■□□□□ 0.24
USP28-209ENST00000540925 CATIPQ7Z7H3 387 aa16.53■□□□□ 0.24
USP28-209ENST00000540925 FBXO11Q86XK2 927 aa16.53■□□□□ 0.24
USP28-209ENST00000540925 ZNF654Q8IZM8 581 aa16.53■□□□□ 0.24
USP28-209ENST00000540925 TBC1D5Q92609 795 aa16.53■□□□□ 0.24
USP28-209ENST00000540925 SENP6Q9GZR1 1112 aaPredicted RBP16.53■□□□□ 0.24
USP28-209ENST00000540925 ADD3Q9UEY8 706 aaKnown RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms