RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 VCPKMTQ9H867 229 aa13.97□□□□□ -0.17
AP003559.1-201ENST00000540906 FBXO28Q9NVF7 368 aa13.97□□□□□ -0.17
AP003559.1-201ENST00000540906 FAM13BQ9NYF5 915 aa13.97□□□□□ -0.17
AP003559.1-201ENST00000540906 RNF181Q9P0P0 153 aa13.97□□□□□ -0.17
AP003559.1-201ENST00000540906 PCDHA1Q9Y5I3 950 aa13.97□□□□□ -0.17
AP003559.1-201ENST00000540906 TDP2O95551 362 aa13.97□□□□□ -0.17
AP003559.1-201ENST00000540906 IKQ13123 557 aaPredicted RBP13.97□□□□□ -0.17
AP003559.1-201ENST00000540906 IQCB1Q15051 598 aa13.97□□□□□ -0.17
AP003559.1-201ENST00000540906 STX1AQ16623 288 aa13.97□□□□□ -0.17
AP003559.1-201ENST00000540906 DPCR1Q3MIW9 517 aa13.97□□□□□ -0.17
AP003559.1-201ENST00000540906 USH1GQ495M9 461 aa13.97□□□□□ -0.17
AP003559.1-201ENST00000540906 CNNM3Q8NE01 707 aa13.97□□□□□ -0.17
AP003559.1-201ENST00000540906 ZNF341Q9BYN7 854 aa13.97□□□□□ -0.17
AP003559.1-201ENST00000540906 DOCK1Q14185 1865 aa13.96□□□□□ -0.17
AP003559.1-201ENST00000540906 SLC37A4O43826 429 aa13.96□□□□□ -0.17
AP003559.1-201ENST00000540906 CCNT1O60563 726 aaKnown RBP13.96□□□□□ -0.17
AP003559.1-201ENST00000540906 CASP1P29466 404 aa13.96□□□□□ -0.17
AP003559.1-201ENST00000540906 NEK8Q86SG6 692 aa13.96□□□□□ -0.17
AP003559.1-201ENST00000540906 LRRC15Q8TF66 581 aa13.96□□□□□ -0.17
AP003559.1-201ENST00000540906 DHX58Q96C10 678 aa13.96□□□□□ -0.17
AP003559.1-201ENST00000540906 TUBE1Q9UJT0 475 aa13.96□□□□□ -0.17
AP003559.1-201ENST00000540906 SYNPO2Q9UMS6 1093 aa13.96□□□□□ -0.17
AP003559.1-201ENST00000540906 ASNSP08243 561 aa13.95□□□□□ -0.18
AP003559.1-201ENST00000540906 CCDC173Q0VFZ6 552 aa13.95□□□□□ -0.18
AP003559.1-201ENST00000540906 E2F4Q16254 413 aa13.95□□□□□ -0.18
AP003559.1-201ENST00000540906 UVSSAQ2YD98 709 aa13.95□□□□□ -0.18
AP003559.1-201ENST00000540906 PSTPIP2Q9H939 334 aa13.95□□□□□ -0.18
AP003559.1-201ENST00000540906 GOPCQ9HD26 462 aa13.95□□□□□ -0.18
AP003559.1-201ENST00000540906 MEIS2O14770 477 aa13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 BMP6P22004 513 aa13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 ZNF165P49910 485 aa13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 C9orf131Q5VYM1 1079 aa13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 DHX40Q8IX18 779 aaKnown RBP13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 CUL5Q93034 780 aa13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 ZKSCAN4Q969J2 545 aaPredicted RBP13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 GJA10Q969M2 543 aa13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 PCDHA5Q9Y5H7 936 aa13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 GRIN3BO60391 1043 aa13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 STAT2P52630 851 aa13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 ARL6IP4Q66PJ3 421 aaKnown RBP13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 CCDC174Q6PII3 467 aa13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 SAMD1Q6SPF0 538 aaPredicted RBP13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 FBXO11Q86XK2 927 aa13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 TBC1D5Q92609 795 aa13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 STAMQ92783 540 aa13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 KIFC2Q96AC6 838 aa13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 AMNQ9BXJ7 453 aa13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 ZNF112Q9UJU3 913 aa13.94□□□□□ -0.18
AP003559.1-201ENST00000540906 PHIPQ8WWQ0 1821 aa13.93□□□□□ -0.18
AP003559.1-201ENST00000540906 CTNND1O60716 968 aaKnown RBP13.93□□□□□ -0.18
AP003559.1-201ENST00000540906 NLRP12P59046 1061 aa13.93□□□□□ -0.18
AP003559.1-201ENST00000540906 SH3RF1Q7Z6J0 888 aa13.93□□□□□ -0.18
AP003559.1-201ENST00000540906 APOBEC3FQ8IUX4 373 aaKnown RBP13.93□□□□□ -0.18
AP003559.1-201ENST00000540906 UIMC1Q96RL1 719 aa13.93□□□□□ -0.18
AP003559.1-201ENST00000540906 FEZ1Q99689 392 aa13.93□□□□□ -0.18
AP003559.1-201ENST00000540906 MTRQ99707 1265 aa13.93□□□□□ -0.18
AP003559.1-201ENST00000540906 ANO10Q9NW15 660 aa13.93□□□□□ -0.18
AP003559.1-201ENST00000540906 NEMFO60524 1076 aa13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 OR52Z1P0C646 297 aa13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 AFMP43652 599 aa13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 MRPL12P52815 198 aaKnown RBP13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 KARSQ15046 597 aaKnown RBP13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 POSTNQ15063 836 aa13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 PDXDC2PQ6P474 469 aa13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 PAGE5Q96GU1 130 aa13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 MTMR9Q96QG7 549 aa13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 RANBP17Q9H2T7 1088 aaKnown RBP13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 MAN1B1Q9UKM7 699 aa13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 DCAF8L1A6NGE4 600 aa13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 ADCY5O95622 1261 aa13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 HOXA13P31271 388 aaPredicted RBP13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 LONP1P36776 959 aaKnown RBP13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 PRKG1Q13976 671 aa13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 DTHD1Q6ZMT9 781 aa13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 AOPEPQ8N6M6 819 aa13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 WRNIP1Q96S55 665 aa13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 PLIN2Q99541 437 aa13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 ANO3Q9BYT9 981 aa13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 EMILIN3Q9NT22 766 aa13.92□□□□□ -0.18
AP003559.1-201ENST00000540906 ADM5C9JUS6 153 aa13.91□□□□□ -0.18
AP003559.1-201ENST00000540906 SLFN14P0C7P3 912 aa13.91□□□□□ -0.18
AP003559.1-201ENST00000540906 PRPHP41219 470 aa13.91□□□□□ -0.18
AP003559.1-201ENST00000540906 SARSP49591 514 aaKnown RBP13.91□□□□□ -0.18
AP003559.1-201ENST00000540906 MTMR2Q13614 643 aa13.91□□□□□ -0.18
AP003559.1-201ENST00000540906 NAALADL2Q58DX5 795 aa13.91□□□□□ -0.18
AP003559.1-201ENST00000540906 ELOA2Q8IYF1 753 aaPredicted RBP13.91□□□□□ -0.18
AP003559.1-201ENST00000540906 CRYGNQ8WXF5 182 aa13.91□□□□□ -0.18
AP003559.1-201ENST00000540906 PARP14Q460N5 1801 aa13.91□□□□□ -0.18
AP003559.1-201ENST00000540906 TECP42680 631 aa13.9□□□□□ -0.18
AP003559.1-201ENST00000540906 PLCB2Q00722 1185 aa13.9□□□□□ -0.18
AP003559.1-201ENST00000540906 SCYL3Q8IZE3 742 aa13.9□□□□□ -0.18
AP003559.1-201ENST00000540906 HAS1Q92839 578 aa13.9□□□□□ -0.18
AP003559.1-201ENST00000540906 MMTAG2Q9BU76 263 aaKnown RBP13.9□□□□□ -0.18
AP003559.1-201ENST00000540906 KIAA1683Q9H0B3 1180 aa13.9□□□□□ -0.18
AP003559.1-201ENST00000540906 SH2D4AQ9H788 454 aa13.9□□□□□ -0.18
AP003559.1-201ENST00000540906 ZNF536O15090 1300 aa13.9□□□□□ -0.18
AP003559.1-201ENST00000540906 PAPPA2Q9BXP8 1791 aa13.9□□□□□ -0.18
AP003559.1-201ENST00000540906 PTPRAP18433 802 aa13.9□□□□□ -0.18
AP003559.1-201ENST00000540906 SPP2Q13103 211 aa13.9□□□□□ -0.18
AP003559.1-201ENST00000540906 NCAPHQ15003 741 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms