RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 SPC25Q9HBM1 224 aa14.86□□□□□ -0.03
CLSTN3-208ENST00000538933 DCP1AQ9NPI6 582 aaPredicted RBP14.86□□□□□ -0.03
CLSTN3-208ENST00000538933 ZNF318Q5VUA4 2279 aa14.86□□□□□ -0.03
CLSTN3-208ENST00000538933 PTPRSQ13332 1948 aa14.86□□□□□ -0.03
CLSTN3-208ENST00000538933 EEF2P13639 858 aaKnown RBP14.85□□□□□ -0.03
CLSTN3-208ENST00000538933 TAP1Q03518 808 aa14.85□□□□□ -0.03
CLSTN3-208ENST00000538933 CXCL17Q6UXB2 119 aa14.85□□□□□ -0.03
CLSTN3-208ENST00000538933 TET1Q8NFU7 2136 aa14.85□□□□□ -0.03
CLSTN3-208ENST00000538933 SWAP70Q9UH65 585 aa14.85□□□□□ -0.03
CLSTN3-208ENST00000538933 MYH7P12883 1935 aa14.85□□□□□ -0.03
CLSTN3-208ENST00000538933 COL4A4P53420 1690 aaPredicted RBP14.84□□□□□ -0.03
CLSTN3-208ENST00000538933 MAGEB6P1A0A0J9YX57 407 aa14.84□□□□□ -0.03
CLSTN3-208ENST00000538933 B4GALT4O60513 344 aa14.84□□□□□ -0.03
CLSTN3-208ENST00000538933 NHLH1Q02575 133 aa14.84□□□□□ -0.03
CLSTN3-208ENST00000538933 ITGA7Q13683 1181 aa14.84□□□□□ -0.03
CLSTN3-208ENST00000538933 BMP2KLQ5H9B9 411 aa14.84□□□□□ -0.03
CLSTN3-208ENST00000538933 DDX11Q96FC9 970 aa14.84□□□□□ -0.03
CLSTN3-208ENST00000538933 SCLYQ96I15 445 aa14.84□□□□□ -0.03
CLSTN3-208ENST00000538933 HAUS7Q99871 368 aa14.84□□□□□ -0.03
CLSTN3-208ENST00000538933 TEX13BQ9BXU2 312 aa14.84□□□□□ -0.03
CLSTN3-208ENST00000538933 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.83□□□□□ -0.04
CLSTN3-208ENST00000538933 GOLIM4O00461 696 aa14.83□□□□□ -0.04
CLSTN3-208ENST00000538933 ATP2A1O14983 1001 aa14.83□□□□□ -0.04
CLSTN3-208ENST00000538933 GRB10Q13322 594 aa14.83□□□□□ -0.04
CLSTN3-208ENST00000538933 TTF1Q15361 905 aaPredicted RBP14.83□□□□□ -0.04
CLSTN3-208ENST00000538933 FAM83BQ5T0W9 1011 aa14.83□□□□□ -0.04
CLSTN3-208ENST00000538933 SNRNP48Q6IEG0 339 aaKnown RBP14.83□□□□□ -0.04
CLSTN3-208ENST00000538933 CASC1Q6TDU7 716 aa14.83□□□□□ -0.04
CLSTN3-208ENST00000538933 ARMCX2Q7L311 632 aa14.83□□□□□ -0.04
CLSTN3-208ENST00000538933 SPRED2Q7Z698 418 aa14.83□□□□□ -0.04
CLSTN3-208ENST00000538933 SDR42E1Q8WUS8 393 aa14.83□□□□□ -0.04
CLSTN3-208ENST00000538933 EVI5LQ96CN4 794 aa14.83□□□□□ -0.04
CLSTN3-208ENST00000538933 FSD1Q9BTV5 496 aa14.83□□□□□ -0.04
CLSTN3-208ENST00000538933 CRNKL1Q9BZJ0 848 aaKnown RBP14.83□□□□□ -0.04
CLSTN3-208ENST00000538933 PAG1Q9NWQ8 432 aa14.83□□□□□ -0.04
CLSTN3-208ENST00000538933 GNEQ9Y223 722 aaKnown RBP14.83□□□□□ -0.04
CLSTN3-208ENST00000538933 GREB1LQ9C091 1923 aaPredicted RBP14.83□□□□□ -0.04
CLSTN3-208ENST00000538933 ZBBXA8MT70 800 aa14.82□□□□□ -0.04
CLSTN3-208ENST00000538933 CABYRO75952 493 aa14.82□□□□□ -0.04
CLSTN3-208ENST00000538933 GSPT1P15170 499 aaKnown RBP14.82□□□□□ -0.04
CLSTN3-208ENST00000538933 PTGS1P23219 599 aa14.82□□□□□ -0.04
CLSTN3-208ENST00000538933 LRRFIP1Q32MZ4 808 aaKnown RBP14.82□□□□□ -0.04
CLSTN3-208ENST00000538933 FAM178BQ8IXR5 827 aa14.82□□□□□ -0.04
CLSTN3-208ENST00000538933 CCDC144CPQ8IYA2 1237 aa14.82□□□□□ -0.04
CLSTN3-208ENST00000538933 ARNTL2Q8WYA1 636 aa14.82□□□□□ -0.04
CLSTN3-208ENST00000538933 CCDC17Q96LX7 622 aa14.82□□□□□ -0.04
CLSTN3-208ENST00000538933 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.82□□□□□ -0.04
CLSTN3-208ENST00000538933 SEZ6LQ9BYH1 1024 aa14.82□□□□□ -0.04
CLSTN3-208ENST00000538933 WDR87Q6ZQQ6 2873 aa14.81□□□□□ -0.04
CLSTN3-208ENST00000538933 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.81□□□□□ -0.04
CLSTN3-208ENST00000538933 TCRBV5S4A2TA0A5A2 114 aa14.81□□□□□ -0.04
CLSTN3-208ENST00000538933 PDE6AP16499 860 aa14.81□□□□□ -0.04
CLSTN3-208ENST00000538933 SDSP20132 328 aa14.81□□□□□ -0.04
CLSTN3-208ENST00000538933 CDK8P49336 464 aa14.81□□□□□ -0.04
CLSTN3-208ENST00000538933 LCORLQ8N3X6 602 aa14.81□□□□□ -0.04
CLSTN3-208ENST00000538933 KANSL2Q9H9L4 492 aa14.81□□□□□ -0.04
CLSTN3-208ENST00000538933 SPTBN4Q9H254 2564 aa14.8□□□□□ -0.04
CLSTN3-208ENST00000538933 PFKMP08237 780 aa14.8□□□□□ -0.04
CLSTN3-208ENST00000538933 PSMC6P62333 389 aa14.8□□□□□ -0.04
CLSTN3-208ENST00000538933 TNFAIP2Q03169 654 aa14.8□□□□□ -0.04
CLSTN3-208ENST00000538933 FSCN1Q16658 493 aaKnown RBP14.8□□□□□ -0.04
CLSTN3-208ENST00000538933 ZSCAN25Q6NSZ9 544 aa14.8□□□□□ -0.04
CLSTN3-208ENST00000538933 GJD3Q8N144 294 aa14.8□□□□□ -0.04
CLSTN3-208ENST00000538933 PHOSPHO2Q8TCD6 241 aa14.8□□□□□ -0.04
CLSTN3-208ENST00000538933 FBXL18Q96ME1 805 aa14.8□□□□□ -0.04
CLSTN3-208ENST00000538933 NUP88Q99567 741 aaPredicted RBP14.8□□□□□ -0.04
CLSTN3-208ENST00000538933 SLF1Q9BQI6 1058 aa14.8□□□□□ -0.04
CLSTN3-208ENST00000538933 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.8□□□□□ -0.04
CLSTN3-208ENST00000538933 ALDH8A1Q9H2A2 487 aaPredicted RBP14.8□□□□□ -0.04
CLSTN3-208ENST00000538933 GOPCQ9HD26 462 aa14.8□□□□□ -0.04
CLSTN3-208ENST00000538933 CYP2D7A0A087X1C5 515 aa14.79□□□□□ -0.04
CLSTN3-208ENST00000538933 HIP1O00291 1037 aa14.79□□□□□ -0.04
CLSTN3-208ENST00000538933 PRKAB2O43741 272 aa14.79□□□□□ -0.04
CLSTN3-208ENST00000538933 CDC45O75419 566 aa14.79□□□□□ -0.04
CLSTN3-208ENST00000538933 CNTN2Q02246 1040 aa14.79□□□□□ -0.04
CLSTN3-208ENST00000538933 TMEM63BQ5T3F8 832 aa14.79□□□□□ -0.04
CLSTN3-208ENST00000538933 SLC9C2Q5TAH2 1124 aa14.79□□□□□ -0.04
CLSTN3-208ENST00000538933 C12orf60Q5U649 245 aa14.79□□□□□ -0.04
CLSTN3-208ENST00000538933 HERC6Q8IVU3 1022 aa14.79□□□□□ -0.04
CLSTN3-208ENST00000538933 PRPF38AQ8NAV1 312 aaKnown RBP14.79□□□□□ -0.04
CLSTN3-208ENST00000538933 SLC9A7Q96T83 725 aa14.79□□□□□ -0.04
CLSTN3-208ENST00000538933 DIAPH3Q9NSV4 1193 aa14.79□□□□□ -0.04
CLSTN3-208ENST00000538933 LMCD1Q9NZU5 365 aa14.79□□□□□ -0.04
CLSTN3-208ENST00000538933 TRIP12Q14669 1992 aaPredicted RBP14.78□□□□□ -0.04
CLSTN3-208ENST00000538933 ZNF532Q9HCE3 1301 aa14.78□□□□□ -0.04
CLSTN3-208ENST00000538933 POTEB3A0JP26 581 aa14.78□□□□□ -0.04
CLSTN3-208ENST00000538933 CYP2C9P11712 490 aa14.78□□□□□ -0.04
CLSTN3-208ENST00000538933 SMPD1P17405 629 aa14.78□□□□□ -0.04
CLSTN3-208ENST00000538933 POTEBQ6S5H4 581 aa14.78□□□□□ -0.04
CLSTN3-208ENST00000538933 C16orf86Q6ZW13 317 aa14.78□□□□□ -0.04
CLSTN3-208ENST00000538933 DEFB128Q7Z7B8 93 aa14.78□□□□□ -0.04
CLSTN3-208ENST00000538933 TLK2Q86UE8 772 aa14.78□□□□□ -0.04
CLSTN3-208ENST00000538933 ANKRD35Q8N283 1001 aa14.78□□□□□ -0.04
CLSTN3-208ENST00000538933 FAM133AQ8N9E0 248 aa14.78□□□□□ -0.04
CLSTN3-208ENST00000538933 KBTBD3Q8NAB2 608 aa14.78□□□□□ -0.04
CLSTN3-208ENST00000538933 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.78□□□□□ -0.04
CLSTN3-208ENST00000538933 KCNH6Q9H252 994 aa14.78□□□□□ -0.04
CLSTN3-208ENST00000538933 TRMT13Q9NUP7 481 aaKnown RBP14.78□□□□□ -0.04
CLSTN3-208ENST00000538933 MYH4Q9Y623 1939 aa14.78□□□□□ -0.04
CLSTN3-208ENST00000538933 TANC1Q9C0D5 1861 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms