RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 SPDYE5A6NIY4 337 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 ZNF185O15231 689 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 CYP27B1O15528 508 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 TMCC1O94876 653 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 A1BGP04217 495 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 CCDC166P0CW27 439 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 RPL13P26373 211 aaKnown RBP13.71□□□□□ -0.21
USP3-203ENST00000538686 SCNN1BP51168 640 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 EXOSC10Q01780 885 aaKnown RBP13.71□□□□□ -0.21
USP3-203ENST00000538686 KIF5AQ12840 1032 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 TTC39AQ5SRH9 613 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 MCM10Q7L590 875 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 TRPM8Q7Z2W7 1104 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 ZNF589Q86UQ0 364 aaPredicted RBP13.71□□□□□ -0.21
USP3-203ENST00000538686 CFAP61Q8NHU2 1237 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 AATFQ9NY61 560 aaKnown RBP eCLIP13.71□□□□□ -0.21
USP3-203ENST00000538686 LIMA1Q9UHB6 759 aaKnown RBP13.71□□□□□ -0.21
USP3-203ENST00000538686 PLAAQ9Y263 795 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 HYOU1Q9Y4L1 999 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 A0A1B0GVG6 124 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 LRRC10BA6NIK2 292 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 TACC1O75410 805 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 CYP21A2P08686 494 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 SP100P23497 879 aaPredicted RBP13.71□□□□□ -0.21
USP3-203ENST00000538686 ALDH5A1P51649 535 aaPredicted RBP13.71□□□□□ -0.21
USP3-203ENST00000538686 POLE2P56282 527 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 HERVK_113P62684 666 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 EZH2Q15910 746 aaKnown RBP13.71□□□□□ -0.21
USP3-203ENST00000538686 SLC4A8Q2Y0W8 1093 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 ODF2Q5BJF6 829 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 AACSQ86V21 672 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 ERICH1Q86X53 443 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 LRRC45Q96CN5 670 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 AGAP3Q96P47 875 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 NSRP1Q9H0G5 558 aaKnown RBP13.71□□□□□ -0.21
USP3-203ENST00000538686 GALNT8Q9NY28 637 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 SAMD15Q9P1V8 674 aa13.71□□□□□ -0.21
USP3-203ENST00000538686 LAMA4Q16363 1823 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 PARP1P09874 1014 aaKnown RBP13.7□□□□□ -0.22
USP3-203ENST00000538686 EIF2S2P20042 333 aaKnown RBP13.7□□□□□ -0.22
USP3-203ENST00000538686 GJA8P48165 433 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 SLC7A5Q01650 507 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 PTPAQ15257 358 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 IRGCQ6NXR0 463 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 SPATA20Q8TB22 786 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 DNAJC7Q99615 494 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 YIPF2Q9BWQ6 316 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 UBA5Q9GZZ9 404 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 RAB17Q9H0T7 212 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 TMEM165Q9HC07 324 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 ZNHIT6Q9NWK9 470 aaKnown RBP13.7□□□□□ -0.22
USP3-203ENST00000538686 MED1Q15648 1581 aaPredicted RBP13.7□□□□□ -0.22
USP3-203ENST00000538686 MTMR3Q13615 1198 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 TMEM154Q6P9G4 183 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 MED15Q96RN5 788 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 NDNQ99608 321 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 FAM129AQ9BZQ8 928 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 KRT23Q9C075 422 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 PIDD1Q9HB75 910 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 CTTNBP2NLQ9P2B4 639 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 SCOCQ9UIL1 159 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 TSKSQ9UJT2 592 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 ITGB1BP2Q9UKP3 347 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 NUB1Q9Y5A7 615 aa13.7□□□□□ -0.22
USP3-203ENST00000538686 USO1O60763 962 aaKnown RBP13.69□□□□□ -0.22
USP3-203ENST00000538686 TRIM68Q6AZZ1 485 aa13.69□□□□□ -0.22
USP3-203ENST00000538686 PIGWQ7Z7B1 504 aa13.69□□□□□ -0.22
USP3-203ENST00000538686 KRI1Q8N9T8 703 aaKnown RBP13.69□□□□□ -0.22
USP3-203ENST00000538686 IFT43Q96FT9 208 aa13.69□□□□□ -0.22
USP3-203ENST00000538686 RAB3IPQ96QF0 476 aaPredicted RBP13.69□□□□□ -0.22
USP3-203ENST00000538686 NCOA5Q9HCD5 579 aaKnown RBP13.69□□□□□ -0.22
USP3-203ENST00000538686 NFU1Q9UMS0 254 aa13.69□□□□□ -0.22
USP3-203ENST00000538686 ERCC6L2Q5T890 1561 aa13.69□□□□□ -0.22
USP3-203ENST00000538686 F8W031 263 aaPredicted RBP13.68□□□□□ -0.22
USP3-203ENST00000538686 CEP104O60308 925 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 ZNF24P17028 368 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 STAT6P42226 847 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 MSH2P43246 934 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 MPP3Q13368 585 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 CUL4BQ13620 913 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 ERMARDQ5T6L9 678 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 RBM26Q5T8P6 1007 aaKnown RBP13.68□□□□□ -0.22
USP3-203ENST00000538686 SYT15Q9BQS2 421 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 CCDC28BQ9BUN5 200 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 LRRC2Q9BYS8 371 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 A0A0G2JS52 829 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 VIL1P09327 827 aaKnown RBP13.68□□□□□ -0.22
USP3-203ENST00000538686 NCALDP61601 193 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 ZNF365Q70YC5 407 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 CCDC80Q76M96 950 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 SMYD1Q8NB12 490 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 WDR66Q8TBY9 1149 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 XPO6Q96QU8 1125 aaKnown RBP13.68□□□□□ -0.22
USP3-203ENST00000538686 CHP1Q99653 195 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 POLD4Q9HCU8 107 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 ADAM22Q9P0K1 906 aa13.68□□□□□ -0.22
USP3-203ENST00000538686 LUC7L2Q9Y383 392 aaKnown RBP13.68□□□□□ -0.22
USP3-203ENST00000538686 EDC4Q6P2E9 1401 aaKnown RBP13.67□□□□□ -0.22
USP3-203ENST00000538686 PHF20L1A8MW92 1017 aa13.67□□□□□ -0.22
USP3-203ENST00000538686 GNAZP19086 355 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms