RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 TSPY3P0CV98 308 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 TSPY8P0CW00 308 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 AARSP49588 968 aaKnown RBP eCLIP12.93□□□□□ -0.34
SYNE1-234ENST00000536990 GRM4Q14833 912 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 TYW1BQ6NUM6 668 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 ZNF444Q8N0Y2 327 aaPredicted RBP12.93□□□□□ -0.34
SYNE1-234ENST00000536990 LRRC15Q8TF66 581 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 DUSP9Q99956 384 aaKnown RBP12.93□□□□□ -0.34
SYNE1-234ENST00000536990 ZC3H4Q9UPT8 1303 aaKnown RBP12.93□□□□□ -0.34
SYNE1-234ENST00000536990 IRS2Q9Y4H2 1338 aa12.93□□□□□ -0.34
SYNE1-234ENST00000536990 RCCD1A6NED2 376 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 MYO1CO00159 1063 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 SRGAP2O75044 1071 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 MYL1P05976 194 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 DNM2P50570 870 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 HSP90B2PQ58FF3 399 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 DTHD1Q6ZMT9 781 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 LEKR1Q6ZMV7 388 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 BBXQ8WY36 941 aaPredicted RBP12.92□□□□□ -0.34
SYNE1-234ENST00000536990 TRIM47Q96LD4 638 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 COL24A1Q17RW2 1714 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 USP17L3A6NCW0 530 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 USP17L4A6NCW7 530 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 PSMA7O14818 248 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 KRT83P78385 493 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 GSTO1P78417 241 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 SEMA3FQ13275 785 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 USP17L1Q7RTZ2 530 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 SRLQ86TD4 932 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 ARHGEF1Q92888 912 aaKnown RBP12.92□□□□□ -0.34
SYNE1-234ENST00000536990 CCSER1Q9C0I3 900 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 LACRTQ9GZZ8 138 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 ACBD3Q9H3P7 528 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 AGPAT5Q9NUQ2 364 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 MAD2L2Q9UI95 211 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 MTMR7Q9Y216 660 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 LEMD3Q9Y2U8 911 aa12.92□□□□□ -0.34
SYNE1-234ENST00000536990 TARSL2A2RTX5 802 aaKnown RBP12.91□□□□□ -0.34
SYNE1-234ENST00000536990 B4DLN1 442 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 PHACTR2O75167 634 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 SYF2O95926 243 aaKnown RBP12.91□□□□□ -0.34
SYNE1-234ENST00000536990 IVLP07476 585 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 DIXDC1Q155Q3 683 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 TSR1Q2NL82 804 aaKnown RBP12.91□□□□□ -0.34
SYNE1-234ENST00000536990 RASSF8Q8NHQ8 419 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 NOC3LQ8WTT2 800 aaKnown RBP12.91□□□□□ -0.34
SYNE1-234ENST00000536990 TGFBRAP1Q8WUH2 860 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 JAKMIP2Q96AA8 810 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 CCNL1Q9UK58 526 aaPredicted RBP12.91□□□□□ -0.34
SYNE1-234ENST00000536990 PES1O00541 588 aaKnown RBP12.91□□□□□ -0.34
SYNE1-234ENST00000536990 SLC35G1Q2M3R5 365 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 FOXR1Q6PIV2 292 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 EHBP1Q8NDI1 1231 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 PURBQ96QR8 312 aaKnown RBP12.91□□□□□ -0.34
SYNE1-234ENST00000536990 TUBGCP2Q9BSJ2 902 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 EXOC1Q9NV70 894 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 RNF216Q9NWF9 866 aaPredicted RBP12.91□□□□□ -0.34
SYNE1-234ENST00000536990 HPCAL4Q9UM19 191 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 MYH1P12882 1939 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 PRPF6O94906 941 aaKnown RBP12.91□□□□□ -0.34
SYNE1-234ENST00000536990 LDHCP07864 332 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 STIM1Q13586 685 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 GALNT17Q6IS24 598 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 HEATR3Q7Z4Q2 680 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 KIAA1328Q86T90 577 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 DHTKD1Q96HY7 919 aaPredicted RBP12.91□□□□□ -0.34
SYNE1-234ENST00000536990 RPGRIP1Q96KN7 1286 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 FAM204AQ9H8W3 233 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 TCP11L1Q9NUJ3 509 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 MAGEC2Q9UBF1 373 aaPredicted RBP12.91□□□□□ -0.34
SYNE1-234ENST00000536990 PCDHA6Q9UN73 950 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 STX8Q9UNK0 236 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 RRP15Q9Y3B9 282 aaKnown RBP12.91□□□□□ -0.34
SYNE1-234ENST00000536990 PCDHA8Q9Y5H6 950 aa12.91□□□□□ -0.34
SYNE1-234ENST00000536990 EIF3CLB5ME19 914 aaKnown RBP12.9□□□□□ -0.34
SYNE1-234ENST00000536990 PDE2AO00408 941 aaPredicted RBP12.9□□□□□ -0.34
SYNE1-234ENST00000536990 TRIM66O15016 1216 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 MCM3P25205 808 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 UBA7P41226 1012 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 KLK7P49862 253 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 PPP4CP60510 307 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 GRAPQ13588 217 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 INF2Q27J81 1249 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 RETREG2Q8NC44 543 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 DAGLBQ8NCG7 672 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 GRAPLQ8TC17 118 aaPredicted RBP12.9□□□□□ -0.34
SYNE1-234ENST00000536990 PLIN2Q99541 437 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 EIF3CQ99613 913 aaKnown RBP12.9□□□□□ -0.34
SYNE1-234ENST00000536990 NHEJ1Q9H9Q4 299 aaPredicted RBP12.9□□□□□ -0.34
SYNE1-234ENST00000536990 ROBO3Q96MS0 1386 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 KRT86O43790 486 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 RNF40O75150 1001 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 FLT1P17948 1338 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 CYLC1P35663 651 aaPredicted RBP12.9□□□□□ -0.34
SYNE1-234ENST00000536990 ZBED6P86452 979 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 CKAP4Q07065 602 aaKnown RBP12.9□□□□□ -0.34
SYNE1-234ENST00000536990 GRIK5Q16478 980 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 ZNF804AQ7Z570 1209 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 CCDC170Q8IYT3 715 aa12.9□□□□□ -0.34
SYNE1-234ENST00000536990 CSGALNACT2Q8N6G5 542 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms