RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 ZC3H15Q8WU90 426 aaKnown RBP7.14□□□□□ -1.27
SYNE1-233ENST00000535896 WDR24Q96S15 920 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 TRMT112Q9UI30 125 aaKnown RBP7.14□□□□□ -1.27
SYNE1-233ENST00000535896 RWDD2AQ9UIY3 292 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 ZNF804BA4D1E1 1349 aa7.14□□□□□ -1.27
SYNE1-233ENST00000535896 LAD1O00515 517 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 EEF1GP26641 437 aaKnown RBP7.13□□□□□ -1.27
SYNE1-233ENST00000535896 OAS2P29728 719 aaKnown RBP7.13□□□□□ -1.27
SYNE1-233ENST00000535896 LONP1P36776 959 aaKnown RBP7.13□□□□□ -1.27
SYNE1-233ENST00000535896 PPARAQ07869 468 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 RASGRF1Q13972 1273 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 LONRF2Q1L5Z9 754 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 MAP9Q49MG5 647 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 CCDC152Q4G0S7 254 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 CATIPQ7Z7H3 387 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 IQCA1Q86XH1 822 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 MAGEB6Q8N7X4 407 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 PDILTQ8N807 584 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 RETREG2Q8NC44 543 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 LRRN4CLQ8ND94 238 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 CTCFLQ8NI51 663 aaPredicted RBP7.13□□□□□ -1.27
SYNE1-233ENST00000535896 GOLGA5Q8TBA6 731 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 TNFRSF25Q93038 417 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 DHX58Q96C10 678 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 NAPGQ99747 312 aaPredicted RBP7.13□□□□□ -1.27
SYNE1-233ENST00000535896 PARD6BQ9BYG5 372 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 FHDC1Q9C0D6 1143 aaPredicted RBP7.13□□□□□ -1.27
SYNE1-233ENST00000535896 CSRNP2Q9H175 543 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 CUEDC2Q9H467 287 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 SH3GLB2Q9NR46 395 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 ABHD10Q9NUJ1 306 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 GNL3LQ9NVN8 582 aaKnown RBP7.13□□□□□ -1.27
SYNE1-233ENST00000535896 PCDHB6Q9Y5E3 794 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 TNKSO95271 1327 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 ANKRD31Q8N7Z5 1873 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 NAV1Q8NEY1 1877 aa7.13□□□□□ -1.27
SYNE1-233ENST00000535896 ANO9A1A5B4 782 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 TARSL2A2RTX5 802 aaKnown RBP7.12□□□□□ -1.27
SYNE1-233ENST00000535896 KLRG2A4D1S0 409 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-233ENST00000535896 CTAGE15A4D2H0 777 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 GRXCR2A6NFK2 248 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 H7C1D1 291 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 PSMD14O00487 310 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 ORC4O43929 436 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 PPFIA3O75145 1194 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 SASH3O75995 380 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 CLSTN1O94985 981 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 CTAGE8P0CG41 777 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 RXRAP19793 462 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 CALML3P27482 149 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 IGHMBP2P38935 993 aaKnown RBP7.12□□□□□ -1.27
SYNE1-233ENST00000535896 ADKP55263 362 aaKnown RBP7.12□□□□□ -1.27
SYNE1-233ENST00000535896 CKAP4Q07065 602 aaKnown RBP7.12□□□□□ -1.27
SYNE1-233ENST00000535896 FUT2Q10981 343 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 PAK1Q13153 545 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 ORC2Q13416 577 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-233ENST00000535896 KCNB1Q14721 858 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 ERFEQ4G0M1 354 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 CCDC178Q5BJE1 867 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 BEND6Q5SZJ8 279 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-233ENST00000535896 ZNF658Q5TYW1 1059 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-233ENST00000535896 ISM2Q6H9L7 571 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 IQCEQ6IPM2 695 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 GALNT17Q6IS24 598 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 CTAGE6Q86UF2 777 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 CTAGE4Q8IX94 777 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 FAM71BQ8TC56 605 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 PAGE5Q96GU1 130 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 NLRP3Q96P20 1036 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 MED15Q96RN5 788 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 ZSCAN10Q96SZ4 725 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-233ENST00000535896 SYT17Q9BSW7 474 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 HAUS4Q9H6D7 363 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 MRPL44Q9H9J2 332 aaKnown RBP7.12□□□□□ -1.27
SYNE1-233ENST00000535896 SAMSN1Q9NSI8 373 aaKnown RBP7.12□□□□□ -1.27
SYNE1-233ENST00000535896 ZNHIT6Q9NWK9 470 aaKnown RBP7.12□□□□□ -1.27
SYNE1-233ENST00000535896 SLC4A4Q9Y6R1 1079 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 ATAD5Q96QE3 1844 aa7.12□□□□□ -1.27
SYNE1-233ENST00000535896 SOWAHDA6NJG2 315 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 H0YIN7 160 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 FOXN1O15353 648 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 GYPCP04921 128 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 GUCY1A2P33402 732 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 KRT83P78385 493 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 CDK17Q00537 523 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 AMPD2Q01433 879 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 CTDSPL2Q05D32 466 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 ITIH3Q06033 890 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 RBL2Q08999 1139 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 STIM1Q13586 685 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 CRY2Q49AN0 593 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 COBLL1Q53SF7 1204 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 HSP90B2PQ58FF3 399 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 TTC38Q5R3I4 469 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 FOXR2Q6PJQ5 311 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 RAD9BQ6WBX8 426 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 ARHGAP27Q6ZUM4 889 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 TMTC3Q6ZXV5 915 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 RAB11FIP4Q86YS3 637 aa7.11□□□□□ -1.27
SYNE1-233ENST00000535896 LCORLQ8N3X6 602 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms