RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 GOLGA6L22H0YM25 854 aa16.32■□□□□ 0.2
TRIM3-212ENST00000533064 ADCY7P51828 1080 aa16.32■□□□□ 0.2
TRIM3-212ENST00000533064 TYW1BQ6NUM6 668 aa16.32■□□□□ 0.2
TRIM3-212ENST00000533064 LBX2Q6XYB7 198 aa16.32■□□□□ 0.2
TRIM3-212ENST00000533064 SMCR8Q8TEV9 937 aaPredicted RBP16.32■□□□□ 0.2
TRIM3-212ENST00000533064 CUL5Q93034 780 aa16.32■□□□□ 0.2
TRIM3-212ENST00000533064 FOXP1Q9H334 677 aaPredicted RBP16.32■□□□□ 0.2
TRIM3-212ENST00000533064 RAVER2Q9HCJ3 691 aaKnown RBP16.32■□□□□ 0.2
TRIM3-212ENST00000533064 PCDHA4Q9UN74 947 aa16.32■□□□□ 0.2
TRIM3-212ENST00000533064 TESPA1A2RU30 521 aaPredicted RBP16.31■□□□□ 0.2
TRIM3-212ENST00000533064 FAM155AB1AL88 458 aaPredicted RBP16.31■□□□□ 0.2
TRIM3-212ENST00000533064 MRPL12P52815 198 aaKnown RBP16.31■□□□□ 0.2
TRIM3-212ENST00000533064 KIF23Q02241 960 aaPredicted RBP16.31■□□□□ 0.2
TRIM3-212ENST00000533064 PLS1Q14651 629 aa16.31■□□□□ 0.2
TRIM3-212ENST00000533064 CYP4F22Q6NT55 531 aa16.31■□□□□ 0.2
TRIM3-212ENST00000533064 BRAPQ7Z569 592 aa16.31■□□□□ 0.2
TRIM3-212ENST00000533064 BLIDQ8IZY5 108 aa16.31■□□□□ 0.2
TRIM3-212ENST00000533064 AGBL1Q96MI9 1066 aa16.31■□□□□ 0.2
TRIM3-212ENST00000533064 PSTPIP2Q9H939 334 aa16.31■□□□□ 0.2
TRIM3-212ENST00000533064 RASSF10A6NK89 507 aa16.3■□□□□ 0.2
TRIM3-212ENST00000533064 ZNF536O15090 1300 aa16.3■□□□□ 0.2
TRIM3-212ENST00000533064 ALAS1P13196 640 aa16.3■□□□□ 0.2
TRIM3-212ENST00000533064 SNRNP48Q6IEG0 339 aaKnown RBP16.3■□□□□ 0.2
TRIM3-212ENST00000533064 DAGLBQ8NCG7 672 aa16.3■□□□□ 0.2
TRIM3-212ENST00000533064 SHISA4Q96DD7 197 aa16.3■□□□□ 0.2
TRIM3-212ENST00000533064 PARK7Q99497 189 aaKnown RBP16.3■□□□□ 0.2
TRIM3-212ENST00000533064 TEX13BQ9BXU2 312 aa16.3■□□□□ 0.2
TRIM3-212ENST00000533064 ZCCHC17Q9NP64 241 aaKnown RBP16.3■□□□□ 0.2
TRIM3-212ENST00000533064 RIC8AQ9NPQ8 531 aa16.3■□□□□ 0.2
TRIM3-212ENST00000533064 PLXNB2O15031 1838 aa16.3■□□□□ 0.2
TRIM3-212ENST00000533064 BTBD18B2RXH4 712 aa16.3■□□□□ 0.2
TRIM3-212ENST00000533064 ATP2A1O14983 1001 aa16.3■□□□□ 0.2
TRIM3-212ENST00000533064 U2AF2P26368 475 aaKnown RBP eCLIP16.3■□□□□ 0.2
TRIM3-212ENST00000533064 STAT3P40763 770 aa16.3■□□□□ 0.2
TRIM3-212ENST00000533064 NOGQ13253 232 aa16.3■□□□□ 0.2
TRIM3-212ENST00000533064 TMEM132BQ14DG7 1078 aa16.3■□□□□ 0.2
TRIM3-212ENST00000533064 REXO1Q8N1G1 1221 aaKnown RBP16.3■□□□□ 0.2
TRIM3-212ENST00000533064 FAM43AQ8N2R8 423 aa16.3■□□□□ 0.2
TRIM3-212ENST00000533064 REPS2Q8NFH8 660 aa16.3■□□□□ 0.2
TRIM3-212ENST00000533064 PAGR1Q9BTK6 254 aa16.3■□□□□ 0.2
TRIM3-212ENST00000533064 ZNF214Q9UL59 606 aaPredicted RBP16.3■□□□□ 0.2
TRIM3-212ENST00000533064 RABGAP1Q9Y3P9 1069 aa16.3■□□□□ 0.2
TRIM3-212ENST00000533064 DOCK3Q8IZD9 2030 aa16.29■□□□□ 0.2
TRIM3-212ENST00000533064 RESTQ13127 1097 aa16.29■□□□□ 0.2
TRIM3-212ENST00000533064 TKFCQ3LXA3 575 aa16.29■□□□□ 0.2
TRIM3-212ENST00000533064 NOSTRINQ8IVI9 506 aa16.29■□□□□ 0.2
TRIM3-212ENST00000533064 TEX2Q8IWB9 1127 aa16.29■□□□□ 0.2
TRIM3-212ENST00000533064 CAPNS2Q96L46 248 aa16.29■□□□□ 0.2
TRIM3-212ENST00000533064 PLXNA1Q9UIW2 1896 aa16.29■□□□□ 0.2
TRIM3-212ENST00000533064 MGAMO43451 1857 aa16.28■□□□□ 0.2
TRIM3-212ENST00000533064 CYP2C8P10632 490 aa16.28■□□□□ 0.2
TRIM3-212ENST00000533064 GCLCP48506 637 aaPredicted RBP16.28■□□□□ 0.2
TRIM3-212ENST00000533064 NR5A1Q13285 461 aa16.28■□□□□ 0.2
TRIM3-212ENST00000533064 MCTP2Q6DN12 878 aa16.28■□□□□ 0.2
TRIM3-212ENST00000533064 MCF2L2Q86YR7 1114 aa16.28■□□□□ 0.2
TRIM3-212ENST00000533064 OXER1Q8TDS5 423 aa16.28■□□□□ 0.2
TRIM3-212ENST00000533064 TRERF1Q96PN7 1200 aa16.28■□□□□ 0.2
TRIM3-212ENST00000533064 PTPN18Q99952 460 aa16.28■□□□□ 0.2
TRIM3-212ENST00000533064 HOMER2Q9NSB8 354 aa16.28■□□□□ 0.2
TRIM3-212ENST00000533064 CCDC194A0A1B0GVG4 234 aa16.27■□□□□ 0.2
TRIM3-212ENST00000533064 KIF28PB7ZC32 967 aa16.27■□□□□ 0.2
TRIM3-212ENST00000533064 COPB2P35606 906 aa16.27■□□□□ 0.2
TRIM3-212ENST00000533064 NPY5RQ15761 445 aa16.27■□□□□ 0.2
TRIM3-212ENST00000533064 IFNL1Q8IU54 200 aa16.27■□□□□ 0.2
TRIM3-212ENST00000533064 REM2Q8IYK8 340 aaPredicted RBP16.27■□□□□ 0.2
TRIM3-212ENST00000533064 SPATC1LQ9H0A9 340 aa16.27■□□□□ 0.2
TRIM3-212ENST00000533064 RNF146Q9NTX7 359 aa16.27■□□□□ 0.2
TRIM3-212ENST00000533064 CFBP00751 764 aa16.27■□□□□ 0.19
TRIM3-212ENST00000533064 TAL1P17542 331 aaPredicted RBP16.27■□□□□ 0.19
TRIM3-212ENST00000533064 TAF1CQ15572 869 aaPredicted RBP16.27■□□□□ 0.19
TRIM3-212ENST00000533064 FOXD4L6Q3SYB3 417 aaPredicted RBP16.27■□□□□ 0.19
TRIM3-212ENST00000533064 FOXD4L3Q6VB84 417 aaPredicted RBP16.27■□□□□ 0.19
TRIM3-212ENST00000533064 KRT25Q7Z3Z0 450 aa16.27■□□□□ 0.19
TRIM3-212ENST00000533064 SAMD3Q8N6K7 520 aa16.27■□□□□ 0.19
TRIM3-212ENST00000533064 BTBD7Q9P203 1132 aa16.27■□□□□ 0.19
TRIM3-212ENST00000533064 BIN2Q9UBW5 565 aaPredicted RBP16.27■□□□□ 0.19
TRIM3-212ENST00000533064 NOL7Q9UMY1 257 aaKnown RBP16.27■□□□□ 0.19
TRIM3-212ENST00000533064 PCDHA6Q9UN73 950 aa16.27■□□□□ 0.19
TRIM3-212ENST00000533064 PCDHA8Q9Y5H6 950 aa16.27■□□□□ 0.19
TRIM3-212ENST00000533064 KIAA1217Q5T5P2 1943 aa16.26■□□□□ 0.19
TRIM3-212ENST00000533064 GCOM1H8Y6P7 765 aaPredicted RBP16.26■□□□□ 0.19
TRIM3-212ENST00000533064 IGF2BP3O00425 579 aaKnown RBP eCLIP16.26■□□□□ 0.19
TRIM3-212ENST00000533064 SLC25A27O95847 323 aa16.26■□□□□ 0.19
TRIM3-212ENST00000533064 POLR2MP0CAP2 368 aa16.26■□□□□ 0.19
TRIM3-212ENST00000533064 TM4SF4P48230 202 aa16.26■□□□□ 0.19
TRIM3-212ENST00000533064 CCNA1P78396 465 aa16.26■□□□□ 0.19
TRIM3-212ENST00000533064 RIOX2Q8IUF8 465 aa16.26■□□□□ 0.19
TRIM3-212ENST00000533064 CHST13Q8NET6 341 aa16.26■□□□□ 0.19
TRIM3-212ENST00000533064 ZNF396Q96N95 335 aaPredicted RBP16.26■□□□□ 0.19
TRIM3-212ENST00000533064 ACAD9Q9H845 621 aa16.26■□□□□ 0.19
TRIM3-212ENST00000533064 MAP3K20Q9NYL2 800 aaKnown RBP16.26■□□□□ 0.19
TRIM3-212ENST00000533064 RBPJLQ9UBG7 517 aa16.26■□□□□ 0.19
TRIM3-212ENST00000533064 FBXO40Q9UH90 709 aa16.26■□□□□ 0.19
TRIM3-212ENST00000533064 LCTP09848 1927 aa16.25■□□□□ 0.19
TRIM3-212ENST00000533064 SPDYE3A6NKU9 549 aa16.25■□□□□ 0.19
TRIM3-212ENST00000533064 M0R2N6 131 aa16.25■□□□□ 0.19
TRIM3-212ENST00000533064 PIK3CDO00329 1044 aa16.25■□□□□ 0.19
TRIM3-212ENST00000533064 FOSP01100 380 aaPredicted RBP16.25■□□□□ 0.19
TRIM3-212ENST00000533064 ERVK-9P63128 1117 aa16.25■□□□□ 0.19
TRIM3-212ENST00000533064 ERVK-24P63145 666 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms