RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 UBXN4Q92575 508 aa12.44□□□□□ -0.42
TRIM3-211ENST00000532542 A0A0U1RQG5 324 aaPredicted RBP12.43□□□□□ -0.42
TRIM3-211ENST00000532542 FAM13AO94988 1023 aa12.43□□□□□ -0.42
TRIM3-211ENST00000532542 ASNSP08243 561 aa12.43□□□□□ -0.42
TRIM3-211ENST00000532542 AP3B2Q13367 1082 aa12.43□□□□□ -0.42
TRIM3-211ENST00000532542 GRIK5Q16478 980 aa12.43□□□□□ -0.42
TRIM3-211ENST00000532542 ZMYND12Q9H0C1 365 aa12.43□□□□□ -0.42
TRIM3-211ENST00000532542 USP17L10C9JJH3 530 aa12.43□□□□□ -0.42
TRIM3-211ENST00000532542 CYLC1P35663 651 aaPredicted RBP12.43□□□□□ -0.42
TRIM3-211ENST00000532542 TOB1P50616 345 aaPredicted RBP12.43□□□□□ -0.42
TRIM3-211ENST00000532542 TBC1D8BQ0IIM8 1120 aa12.43□□□□□ -0.42
TRIM3-211ENST00000532542 UBE2SQ16763 222 aa12.43□□□□□ -0.42
TRIM3-211ENST00000532542 RSBN1LQ6PCB5 846 aaPredicted RBP12.43□□□□□ -0.42
TRIM3-211ENST00000532542 DAGLBQ8NCG7 672 aa12.43□□□□□ -0.42
TRIM3-211ENST00000532542 EHD4Q9H223 541 aa12.43□□□□□ -0.42
TRIM3-211ENST00000532542 AS3MTQ9HBK9 375 aa12.43□□□□□ -0.42
TRIM3-211ENST00000532542 HPSEQ9Y251 543 aa12.43□□□□□ -0.42
TRIM3-211ENST00000532542 USO1O60763 962 aaKnown RBP12.43□□□□□ -0.42
TRIM3-211ENST00000532542 ZBTB7AO95365 584 aa12.43□□□□□ -0.42
TRIM3-211ENST00000532542 NF2P35240 595 aa12.43□□□□□ -0.42
TRIM3-211ENST00000532542 HERC4Q5GLZ8 1057 aaPredicted RBP12.43□□□□□ -0.42
TRIM3-211ENST00000532542 TCERG1LQ5VWI1 586 aa12.43□□□□□ -0.42
TRIM3-211ENST00000532542 FAM160B2Q86V87 743 aa12.43□□□□□ -0.42
TRIM3-211ENST00000532542 DHX40Q8IX18 779 aaKnown RBP12.43□□□□□ -0.42
TRIM3-211ENST00000532542 CPXCR1Q8N123 301 aa12.43□□□□□ -0.42
TRIM3-211ENST00000532542 LARP4BQ92615 738 aaKnown RBP12.43□□□□□ -0.42
TRIM3-211ENST00000532542 NOC4LQ9BVI4 516 aaKnown RBP12.43□□□□□ -0.42
TRIM3-211ENST00000532542 SMIM22K7EJ46 135 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 RHBDL3P58872 404 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 KIF4BQ2VIQ3 1234 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 SYCP3Q8IZU3 236 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 KIAA1524Q8TCG1 905 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 TAB2Q9NYJ8 693 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 TMOD4Q9NZQ9 345 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 ESYT2A0FGR8 921 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 TRAF5O00463 557 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 FKBP1AP62942 108 aaKnown RBP12.42□□□□□ -0.42
TRIM3-211ENST00000532542 GPS2Q13227 327 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 SRRTQ9BXP5 876 aaKnown RBP12.42□□□□□ -0.42
TRIM3-211ENST00000532542 DNAI1Q9UI46 699 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 KCNJ18B7U540 433 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 PLCG1P19174 1290 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 KCNJ12Q14500 433 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 CACTINQ8WUQ7 758 aaKnown RBP12.42□□□□□ -0.42
TRIM3-211ENST00000532542 QRICH1Q2TAL8 776 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 TDRD12Q587J7 1177 aaKnown RBP12.42□□□□□ -0.42
TRIM3-211ENST00000532542 AKT1S1Q96B36 256 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 DHTKD1Q96HY7 919 aaPredicted RBP12.42□□□□□ -0.42
TRIM3-211ENST00000532542 ANO3Q9BYT9 981 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 MMRN2Q9H8L6 949 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 RIC8AQ9NPQ8 531 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 PYCARDQ9ULZ3 195 aa12.42□□□□□ -0.42
TRIM3-211ENST00000532542 RPL13P26373 211 aaKnown RBP12.41□□□□□ -0.42
TRIM3-211ENST00000532542 HOXA7P31268 230 aaPredicted RBP12.41□□□□□ -0.42
TRIM3-211ENST00000532542 NFIAQ12857 509 aa12.41□□□□□ -0.42
TRIM3-211ENST00000532542 SEMA3FQ13275 785 aa12.41□□□□□ -0.42
TRIM3-211ENST00000532542 SYCP1Q15431 976 aa12.41□□□□□ -0.42
TRIM3-211ENST00000532542 HS2ST1Q7LGA3 356 aa12.41□□□□□ -0.42
TRIM3-211ENST00000532542 MCF2L2Q86YR7 1114 aa12.41□□□□□ -0.42
TRIM3-211ENST00000532542 NAA15Q9BXJ9 866 aaKnown RBP12.41□□□□□ -0.42
TRIM3-211ENST00000532542 RWDD2AQ9UIY3 292 aa12.41□□□□□ -0.42
TRIM3-211ENST00000532542 CETN1Q12798 172 aa12.41□□□□□ -0.42
TRIM3-211ENST00000532542 MIGA2Q7L4E1 593 aa12.41□□□□□ -0.42
TRIM3-211ENST00000532542 VPS36Q86VN1 386 aa12.41□□□□□ -0.42
TRIM3-211ENST00000532542 CLEC10AQ8IUN9 316 aa12.41□□□□□ -0.42
TRIM3-211ENST00000532542 SMYD4Q8IYR2 804 aaPredicted RBP12.41□□□□□ -0.42
TRIM3-211ENST00000532542 CCDC51Q96ER9 411 aa12.41□□□□□ -0.42
TRIM3-211ENST00000532542 NUP58Q9BVL2 599 aa12.41□□□□□ -0.42
TRIM3-211ENST00000532542 MRIQ9BWK5 157 aa12.41□□□□□ -0.42
TRIM3-211ENST00000532542 MYH3P11055 1940 aa12.41□□□□□ -0.42
TRIM3-211ENST00000532542 CHMP2AO43633 222 aa12.41□□□□□ -0.42
TRIM3-211ENST00000532542 ATP1A3P13637 1013 aa12.41□□□□□ -0.42
TRIM3-211ENST00000532542 EHBP1Q8NDI1 1231 aa12.41□□□□□ -0.42
TRIM3-211ENST00000532542 GAS7O60861 476 aa12.4□□□□□ -0.42
TRIM3-211ENST00000532542 PRR29P0C7W0 189 aa12.4□□□□□ -0.42
TRIM3-211ENST00000532542 DPEP1P16444 411 aa12.4□□□□□ -0.42
TRIM3-211ENST00000532542 MPHOSPH6Q99547 160 aaKnown RBP12.4□□□□□ -0.42
TRIM3-211ENST00000532542 CCSER1Q9C0I3 900 aa12.4□□□□□ -0.42
TRIM3-211ENST00000532542 FOXN1O15353 648 aa12.4□□□□□ -0.42
TRIM3-211ENST00000532542 AKR1B10O60218 316 aa12.4□□□□□ -0.42
TRIM3-211ENST00000532542 KRT83P78385 493 aa12.4□□□□□ -0.42
TRIM3-211ENST00000532542 GPBP1Q86WP2 473 aa12.4□□□□□ -0.42
TRIM3-211ENST00000532542 ZNF384Q8TF68 577 aa12.4□□□□□ -0.42
TRIM3-211ENST00000532542 FAM151AQ8WW52 585 aa12.4□□□□□ -0.42
TRIM3-211ENST00000532542 UIMC1Q96RL1 719 aa12.4□□□□□ -0.42
TRIM3-211ENST00000532542 TMEM260Q9NX78 707 aa12.4□□□□□ -0.42
TRIM3-211ENST00000532542 TJP1Q07157 1748 aa12.4□□□□□ -0.42
TRIM3-211ENST00000532542 PLS1Q14651 629 aa12.4□□□□□ -0.42
TRIM3-211ENST00000532542 TTBK2Q6IQ55 1244 aa12.4□□□□□ -0.42
TRIM3-211ENST00000532542 CCPG1Q9ULG6 757 aa12.4□□□□□ -0.42
TRIM3-211ENST00000532542 CETN3O15182 167 aa12.4□□□□□ -0.43
TRIM3-211ENST00000532542 USP49Q70CQ1 688 aa12.4□□□□□ -0.43
TRIM3-211ENST00000532542 KRT26Q7Z3Y9 468 aa12.4□□□□□ -0.43
TRIM3-211ENST00000532542 TMTC1Q8IUR5 882 aa12.4□□□□□ -0.43
TRIM3-211ENST00000532542 MYOCDQ8IZQ8 938 aa12.4□□□□□ -0.43
TRIM3-211ENST00000532542 NEK11Q8NG66 645 aa12.4□□□□□ -0.43
TRIM3-211ENST00000532542 NID2Q14112 1375 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 USP14P54578 494 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 CUL4BQ13620 913 aa12.39□□□□□ -0.43
TRIM3-211ENST00000532542 DACT2Q5SW24 774 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms