RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 A0A0U1RQG5 324 aaPredicted RBP17.34■□□□□ 0.37
VPS28-215ENST00000531924 SMCHD1A6NHR9 2005 aa17.34■□□□□ 0.37
VPS28-215ENST00000531924 ZNF213O14771 459 aa17.34■□□□□ 0.37
VPS28-215ENST00000531924 TLR3O15455 904 aaKnown RBP17.34■□□□□ 0.37
VPS28-215ENST00000531924 ZEB2O60315 1214 aa17.34■□□□□ 0.37
VPS28-215ENST00000531924 ZMYM6O95789 1325 aa17.34■□□□□ 0.37
VPS28-215ENST00000531924 SDSP20132 328 aa17.34■□□□□ 0.37
VPS28-215ENST00000531924 FAAP100Q0VG06 881 aa17.34■□□□□ 0.37
VPS28-215ENST00000531924 MUM1L1Q5H9M0 696 aa17.34■□□□□ 0.37
VPS28-215ENST00000531924 AKNAD1Q5T1N1 836 aa17.34■□□□□ 0.37
VPS28-215ENST00000531924 FRMPD2Q68DX3 1309 aaPredicted RBP17.34■□□□□ 0.37
VPS28-215ENST00000531924 CCSAPQ6IQ19 270 aaPredicted RBP17.34■□□□□ 0.37
VPS28-215ENST00000531924 TTBK2Q6IQ55 1244 aa17.34■□□□□ 0.37
VPS28-215ENST00000531924 RASGRP2Q7LDG7 609 aa17.34■□□□□ 0.37
VPS28-215ENST00000531924 ZNF589Q86UQ0 364 aaPredicted RBP17.34■□□□□ 0.37
VPS28-215ENST00000531924 SMC5Q8IY18 1101 aa17.34■□□□□ 0.37
VPS28-215ENST00000531924 TTC14Q96N46 770 aa17.34■□□□□ 0.37
VPS28-215ENST00000531924 UPF3AQ9H1J1 476 aaKnown RBP17.34■□□□□ 0.37
VPS28-215ENST00000531924 TCP11L1Q9NUJ3 509 aa17.34■□□□□ 0.37
VPS28-215ENST00000531924 CYP39A1Q9NYL5 469 aa17.34■□□□□ 0.37
VPS28-215ENST00000531924 ADD3Q9UEY8 706 aaKnown RBP17.34■□□□□ 0.37
VPS28-215ENST00000531924 ADCY6O43306 1168 aa17.33■□□□□ 0.36
VPS28-215ENST00000531924 NOVP48745 357 aa17.33■□□□□ 0.36
VPS28-215ENST00000531924 EEPD1Q7L9B9 569 aa17.33■□□□□ 0.36
VPS28-215ENST00000531924 ESR2Q92731 530 aa17.33■□□□□ 0.36
VPS28-215ENST00000531924 RANBP17Q9H2T7 1088 aaKnown RBP17.33■□□□□ 0.36
VPS28-215ENST00000531924 PTPDC1A2A3K4 754 aa17.32■□□□□ 0.36
VPS28-215ENST00000531924 ARVCFO00192 962 aa17.32■□□□□ 0.36
VPS28-215ENST00000531924 HIP1O00291 1037 aa17.32■□□□□ 0.36
VPS28-215ENST00000531924 DYNC1LI2O43237 492 aaPredicted RBP17.32■□□□□ 0.36
VPS28-215ENST00000531924 TIMP1P01033 207 aa17.32■□□□□ 0.36
VPS28-215ENST00000531924 ITGB8P26012 769 aa17.32■□□□□ 0.36
VPS28-215ENST00000531924 IRX5P78411 483 aaPredicted RBP17.32■□□□□ 0.36
VPS28-215ENST00000531924 SMAD3P84022 425 aaKnown RBP17.32■□□□□ 0.36
VPS28-215ENST00000531924 BEX3Q00994 111 aa17.32■□□□□ 0.36
VPS28-215ENST00000531924 NUCB1Q02818 461 aa17.32■□□□□ 0.36
VPS28-215ENST00000531924 FSCN1Q16658 493 aaKnown RBP17.32■□□□□ 0.36
VPS28-215ENST00000531924 IQSEC1Q6DN90 963 aa17.32■□□□□ 0.36
VPS28-215ENST00000531924 CWC27Q6UX04 472 aaKnown RBP17.32■□□□□ 0.36
VPS28-215ENST00000531924 BTNL9Q6UXG8 535 aa17.32■□□□□ 0.36
VPS28-215ENST00000531924 TLK2Q86UE8 772 aa17.32■□□□□ 0.36
VPS28-215ENST00000531924 MPHOSPH6Q99547 160 aaKnown RBP17.32■□□□□ 0.36
VPS28-215ENST00000531924 KATNBL1Q9H079 304 aa17.32■□□□□ 0.36
VPS28-215ENST00000531924 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.31■□□□□ 0.36
VPS28-215ENST00000531924 DLL1O00548 723 aa17.31■□□□□ 0.36
VPS28-215ENST00000531924 CABYRO75952 493 aa17.31■□□□□ 0.36
VPS28-215ENST00000531924 BAATQ14032 418 aaPredicted RBP17.31■□□□□ 0.36
VPS28-215ENST00000531924 KIAA1211Q6ZU35 1233 aa17.31■□□□□ 0.36
VPS28-215ENST00000531924 FBXO16Q8IX29 292 aaPredicted RBP17.31■□□□□ 0.36
VPS28-215ENST00000531924 VTA1Q9NP79 307 aa17.31■□□□□ 0.36
VPS28-215ENST00000531924 IGHDP01880 384 aa17.3■□□□□ 0.36
VPS28-215ENST00000531924 PDHBP11177 359 aa17.3■□□□□ 0.36
VPS28-215ENST00000531924 CALML3P27482 149 aa17.3■□□□□ 0.36
VPS28-215ENST00000531924 CDK7P50613 346 aa17.3■□□□□ 0.36
VPS28-215ENST00000531924 CCDC178Q5BJE1 867 aa17.3■□□□□ 0.36
VPS28-215ENST00000531924 CXCL17Q6UXB2 119 aa17.3■□□□□ 0.36
VPS28-215ENST00000531924 IQCA1Q86XH1 822 aa17.3■□□□□ 0.36
VPS28-215ENST00000531924 TBC1D10CQ8IV04 446 aa17.3■□□□□ 0.36
VPS28-215ENST00000531924 PLEKHM2Q8IWE5 1019 aa17.3■□□□□ 0.36
VPS28-215ENST00000531924 TMEM199Q8N511 208 aa17.3■□□□□ 0.36
VPS28-215ENST00000531924 EXOC6Q8TAG9 804 aa17.3■□□□□ 0.36
VPS28-215ENST00000531924 LTBP2Q14767 1821 aa17.3■□□□□ 0.36
VPS28-215ENST00000531924 COL6A3P12111 3177 aa17.29■□□□□ 0.36
VPS28-215ENST00000531924 SMPD1P17405 629 aa17.29■□□□□ 0.36
VPS28-215ENST00000531924 NT5C2P49902 561 aa17.29■□□□□ 0.36
VPS28-215ENST00000531924 EPHB4P54760 987 aa17.29■□□□□ 0.36
VPS28-215ENST00000531924 ZNF543Q08ER8 600 aa17.29■□□□□ 0.36
VPS28-215ENST00000531924 PPIGQ13427 754 aaKnown RBP eCLIP17.29■□□□□ 0.361e-7■□□□□ 10.9
VPS28-215ENST00000531924 GPATCH4Q5T3I0 446 aaKnown RBP17.29■□□□□ 0.36
VPS28-215ENST00000531924 MFSD5Q6N075 450 aa17.29■□□□□ 0.36
VPS28-215ENST00000531924 RNF207Q6ZRF8 634 aa17.29■□□□□ 0.36
VPS28-215ENST00000531924 GUCD1Q96NT3 240 aa17.29■□□□□ 0.36
VPS28-215ENST00000531924 PURBQ96QR8 312 aaKnown RBP17.29■□□□□ 0.36
VPS28-215ENST00000531924 ZKSCAN3Q9BRR0 538 aa17.29■□□□□ 0.36
VPS28-215ENST00000531924 SEMA6BQ9H3T3 888 aa17.29■□□□□ 0.36
VPS28-215ENST00000531924 OSBPL3Q9H4L5 887 aa17.29■□□□□ 0.36
VPS28-215ENST00000531924 PDGFCQ9NRA1 345 aa17.29■□□□□ 0.36
VPS28-215ENST00000531924 CTNNA3Q9UI47 895 aa17.29■□□□□ 0.36
VPS28-215ENST00000531924 TBX21Q9UL17 535 aa17.29■□□□□ 0.36
VPS28-215ENST00000531924 GNEQ9Y223 722 aaKnown RBP17.29■□□□□ 0.36
VPS28-215ENST00000531924 DDX49Q9Y6V7 483 aaKnown RBP17.29■□□□□ 0.36
VPS28-215ENST00000531924 LAMA2P24043 3122 aaKnown RBP17.29■□□□□ 0.36
VPS28-215ENST00000531924 B4DLN1 442 aa17.28■□□□□ 0.36
VPS28-215ENST00000531924 NFIBO00712 420 aa17.28■□□□□ 0.36
VPS28-215ENST00000531924 MRPL12P52815 198 aaKnown RBP17.28■□□□□ 0.36
VPS28-215ENST00000531924 NKX3-2P78367 333 aa17.28■□□□□ 0.36
VPS28-215ENST00000531924 PDE4DQ08499 809 aa17.28■□□□□ 0.36
VPS28-215ENST00000531924 IMMTQ16891 758 aaKnown RBP17.28■□□□□ 0.36
VPS28-215ENST00000531924 DGKHQ86XP1 1220 aa17.28■□□□□ 0.36
VPS28-215ENST00000531924 PPP1R12CQ9BZL4 782 aa17.28■□□□□ 0.36
VPS28-215ENST00000531924 KAT14Q9H8E8 782 aa17.28■□□□□ 0.36
VPS28-215ENST00000531924 Q9Y3F1 56 aa17.28■□□□□ 0.36
VPS28-215ENST00000531924 ASTN1O14525 1302 aa17.27■□□□□ 0.36
VPS28-215ENST00000531924 NEDD4P46934 1319 aa17.27■□□□□ 0.36
VPS28-215ENST00000531924 LOC102724159A0A0B4J2E5 919 aa17.27■□□□□ 0.36
VPS28-215ENST00000531924 CTAGE5O15320 804 aa17.27■□□□□ 0.36
VPS28-215ENST00000531924 KDM4AO75164 1064 aa17.27■□□□□ 0.36
VPS28-215ENST00000531924 ALDH5A1P51649 535 aaPredicted RBP17.27■□□□□ 0.36
VPS28-215ENST00000531924 ITGA7Q13683 1181 aa17.27■□□□□ 0.36
VPS28-215ENST00000531924 PWP2Q15269 919 aaKnown RBP17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms