RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 CLEC4DQ8WXI8 215 aa16.79■□□□□ 0.28
CPSF1-206ENST00000531480 ACAD9Q9H845 621 aa16.79■□□□□ 0.28
CPSF1-206ENST00000531480 TPCN1Q9ULQ1 816 aa16.79■□□□□ 0.28
CPSF1-206ENST00000531480 IVNS1ABPQ9Y6Y0 642 aa16.79■□□□□ 0.28
CPSF1-206ENST00000531480 FCER1AP12319 257 aa16.78■□□□□ 0.28
CPSF1-206ENST00000531480 ADORA2AP29274 412 aa16.78■□□□□ 0.28
CPSF1-206ENST00000531480 ADD1P35611 737 aaKnown RBP16.78■□□□□ 0.28
CPSF1-206ENST00000531480 GHRHRQ02643 423 aa16.78■□□□□ 0.28
CPSF1-206ENST00000531480 MUM1L1Q5H9M0 696 aa16.78■□□□□ 0.28
CPSF1-206ENST00000531480 TRERF1Q96PN7 1200 aa16.78■□□□□ 0.28
CPSF1-206ENST00000531480 PIGSQ96S52 555 aa16.78■□□□□ 0.28
CPSF1-206ENST00000531480 AMNQ9BXJ7 453 aa16.78■□□□□ 0.28
CPSF1-206ENST00000531480 RNF146Q9NTX7 359 aa16.78■□□□□ 0.28
CPSF1-206ENST00000531480 PTCH2Q9Y6C5 1203 aa16.78■□□□□ 0.28
CPSF1-206ENST00000531480 ABCB11O95342 1321 aa16.77■□□□□ 0.28
CPSF1-206ENST00000531480 PFKFB2O60825 505 aa16.77■□□□□ 0.28
CPSF1-206ENST00000531480 COBLO75128 1261 aa16.77■□□□□ 0.28
CPSF1-206ENST00000531480 ALAS1P13196 640 aa16.77■□□□□ 0.28
CPSF1-206ENST00000531480 RGS2P41220 211 aa16.77■□□□□ 0.28
CPSF1-206ENST00000531480 TRAF1Q13077 416 aa16.77■□□□□ 0.28
CPSF1-206ENST00000531480 FBXO11Q86XK2 927 aa16.77■□□□□ 0.28
CPSF1-206ENST00000531480 CMTR1Q8N1G2 835 aaKnown RBP16.77■□□□□ 0.28
CPSF1-206ENST00000531480 RRP36Q96EU6 259 aaKnown RBP16.77■□□□□ 0.28
CPSF1-206ENST00000531480 APBA2Q99767 749 aa16.77■□□□□ 0.28
CPSF1-206ENST00000531480 VAT1LQ9HCJ6 419 aa16.77■□□□□ 0.28
CPSF1-206ENST00000531480 DIS3Q9Y2L1 958 aaKnown RBP16.77■□□□□ 0.28
CPSF1-206ENST00000531480 PFASO15067 1338 aa16.76■□□□□ 0.27
CPSF1-206ENST00000531480 OPLAHO14841 1288 aa16.76■□□□□ 0.27
CPSF1-206ENST00000531480 IFNAR1P17181 557 aa16.76■□□□□ 0.27
CPSF1-206ENST00000531480 KCTD2Q14681 263 aa16.76■□□□□ 0.27
CPSF1-206ENST00000531480 ZNF792Q3KQV3 632 aa16.76■□□□□ 0.27
CPSF1-206ENST00000531480 WDR78Q5VTH9 848 aa16.76■□□□□ 0.27
CPSF1-206ENST00000531480 MMP19Q99542 508 aa16.76■□□□□ 0.27
CPSF1-206ENST00000531480 A1CFQ9NQ94 594 aaKnown RBP16.76■□□□□ 0.27
CPSF1-206ENST00000531480 NFIBO00712 420 aa16.75■□□□□ 0.27
CPSF1-206ENST00000531480 DHX16O60231 1041 aaKnown RBP16.75■□□□□ 0.27
CPSF1-206ENST00000531480 ECM2O94769 699 aaPredicted RBP16.75■□□□□ 0.27
CPSF1-206ENST00000531480 TAL1P17542 331 aaPredicted RBP16.75■□□□□ 0.27
CPSF1-206ENST00000531480 ME3Q16798 604 aa16.75■□□□□ 0.27
CPSF1-206ENST00000531480 TRMT44Q8IYL2 757 aaKnown RBP16.75■□□□□ 0.27
CPSF1-206ENST00000531480 SAMD3Q8N6K7 520 aa16.75■□□□□ 0.27
CPSF1-206ENST00000531480 FAM133AQ8N9E0 248 aa16.75■□□□□ 0.27
CPSF1-206ENST00000531480 SLAIN1Q8ND83 568 aa16.75■□□□□ 0.27
CPSF1-206ENST00000531480 NPLOC4Q8TAT6 608 aa16.75■□□□□ 0.27
CPSF1-206ENST00000531480 ARMC5Q96C12 935 aa16.75■□□□□ 0.27
CPSF1-206ENST00000531480 FGD4Q96M96 766 aa16.75■□□□□ 0.27
CPSF1-206ENST00000531480 LARP6Q9BRS8 491 aaKnown RBP16.75■□□□□ 0.27
CPSF1-206ENST00000531480 HOMER2Q9NSB8 354 aa16.75■□□□□ 0.27
CPSF1-206ENST00000531480 CYP39A1Q9NYL5 469 aa16.75■□□□□ 0.27
CPSF1-206ENST00000531480 PRPF3O43395 683 aaKnown RBP16.74■□□□□ 0.27
CPSF1-206ENST00000531480 ADCY3O60266 1144 aa16.74■□□□□ 0.27
CPSF1-206ENST00000531480 SCRN1Q12765 414 aa16.74■□□□□ 0.27
CPSF1-206ENST00000531480 OLFML2BQ68BL8 750 aa16.74■□□□□ 0.27
CPSF1-206ENST00000531480 ZNF467Q7Z7K2 595 aaPredicted RBP16.74■□□□□ 0.27
CPSF1-206ENST00000531480 HOMER1Q86YM7 354 aa16.74■□□□□ 0.27
CPSF1-206ENST00000531480 RAET1EQ8TD07 263 aa16.74■□□□□ 0.27
CPSF1-206ENST00000531480 RNF26Q9BY78 433 aaPredicted RBP16.74■□□□□ 0.27
CPSF1-206ENST00000531480 NCOA5Q9HCD5 579 aaKnown RBP16.74■□□□□ 0.27
CPSF1-206ENST00000531480 CWC22Q9HCG8 908 aaKnown RBP16.74■□□□□ 0.27
CPSF1-206ENST00000531480 MAP3K20Q9NYL2 800 aaKnown RBP16.74■□□□□ 0.27
CPSF1-206ENST00000531480 RBM27Q9P2N5 1060 aaKnown RBP16.74■□□□□ 0.27
CPSF1-206ENST00000531480 LIMCH1Q9UPQ0 1083 aa16.74■□□□□ 0.27
CPSF1-206ENST00000531480 MRPL11Q9Y3B7 192 aaKnown RBP16.74■□□□□ 0.27
CPSF1-206ENST00000531480 PCDHA1Q9Y5I3 950 aa16.74■□□□□ 0.27
CPSF1-206ENST00000531480 hCG_1984214I3L0E3 225 aa16.73■□□□□ 0.27
CPSF1-206ENST00000531480 LARGE1O95461 756 aa16.73■□□□□ 0.27
CPSF1-206ENST00000531480 CYP2B6P20813 491 aa16.73■□□□□ 0.27
CPSF1-206ENST00000531480 GRK4P32298 578 aa16.73■□□□□ 0.27
CPSF1-206ENST00000531480 RGS19P49795 217 aa16.73■□□□□ 0.27
CPSF1-206ENST00000531480 HSD17B4P51659 736 aa16.73■□□□□ 0.27
CPSF1-206ENST00000531480 CCT2P78371 535 aaKnown RBP16.73■□□□□ 0.27
CPSF1-206ENST00000531480 USH1GQ495M9 461 aa16.73■□□□□ 0.27
CPSF1-206ENST00000531480 MAMDC4Q6UXC1 1216 aa16.73■□□□□ 0.27
CPSF1-206ENST00000531480 TEX2Q8IWB9 1127 aa16.73■□□□□ 0.27
CPSF1-206ENST00000531480 ANKRD35Q8N283 1001 aa16.73■□□□□ 0.27
CPSF1-206ENST00000531480 CCDC82Q8N4S0 544 aa16.73■□□□□ 0.27
CPSF1-206ENST00000531480 MSL3Q8N5Y2 521 aaKnown RBP16.73■□□□□ 0.27
CPSF1-206ENST00000531480 ZNF713Q8N859 430 aaPredicted RBP16.73■□□□□ 0.27
CPSF1-206ENST00000531480 TRIB2Q92519 343 aa16.73■□□□□ 0.27
CPSF1-206ENST00000531480 GTF3C6Q969F1 213 aa16.73■□□□□ 0.27
CPSF1-206ENST00000531480 MAML3Q96JK9 1138 aa16.73■□□□□ 0.27
CPSF1-206ENST00000531480 SLKQ9H2G2 1235 aaPredicted RBP16.73■□□□□ 0.27
CPSF1-206ENST00000531480 SLC5A4Q9NY91 659 aa16.73■□□□□ 0.27
CPSF1-206ENST00000531480 FLRT1Q9NZU1 646 aa16.73■□□□□ 0.27
CPSF1-206ENST00000531480 SEC63Q9UGP8 760 aaKnown RBP16.73■□□□□ 0.27
CPSF1-206ENST00000531480 NAP1L2Q9ULW6 460 aaPredicted RBP16.73■□□□□ 0.27
CPSF1-206ENST00000531480 LOC102724159A0A0B4J2E5 919 aa16.72■□□□□ 0.27
CPSF1-206ENST00000531480 PGK2P07205 417 aa16.72■□□□□ 0.27
CPSF1-206ENST00000531480 SLC4A3P48751 1232 aa16.72■□□□□ 0.27
CPSF1-206ENST00000531480 PWP2Q15269 919 aaKnown RBP16.72■□□□□ 0.27
CPSF1-206ENST00000531480 PKN1Q16512 942 aa16.72■□□□□ 0.27
CPSF1-206ENST00000531480 PFKFB3Q16875 520 aaPredicted RBP16.72■□□□□ 0.27
CPSF1-206ENST00000531480 MAP3K21Q5TCX8 1036 aa16.72■□□□□ 0.27
CPSF1-206ENST00000531480 DPP9Q86TI2 863 aa16.72■□□□□ 0.27
CPSF1-206ENST00000531480 MCF2L2Q86YR7 1114 aa16.72■□□□□ 0.27
CPSF1-206ENST00000531480 V9GY48 417 aaPredicted RBP16.72■□□□□ 0.27
CPSF1-206ENST00000531480 LRRC37A2A6NM11 1700 aa16.72■□□□□ 0.27
CPSF1-206ENST00000531480 ASTN1O14525 1302 aa16.71■□□□□ 0.27
CPSF1-206ENST00000531480 MCM3APO60318 1980 aa16.71■□□□□ 0.27
CPSF1-206ENST00000531480 CTDNEP1O95476 244 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms