RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 BMP8BP34820 402 aa15.58■□□□□ 0.08
VPS28-211ENST00000530790 PTH1RQ03431 593 aa15.58■□□□□ 0.08
VPS28-211ENST00000530790 CCDC144BQ3MJ40 725 aa15.58■□□□□ 0.08
VPS28-211ENST00000530790 ASPRV1Q53RT3 343 aa15.58■□□□□ 0.08
VPS28-211ENST00000530790 IFIT1BQ5T764 474 aaKnown RBP15.58■□□□□ 0.08
VPS28-211ENST00000530790 SLC39A5Q6ZMH5 540 aa15.58■□□□□ 0.08
VPS28-211ENST00000530790 CENPQQ7L2Z9 268 aaPredicted RBP15.58■□□□□ 0.08
VPS28-211ENST00000530790 SPC25Q9HBM1 224 aa15.58■□□□□ 0.08
VPS28-211ENST00000530790 TRIOBPQ9H2D6 2365 aa15.58■□□□□ 0.08
VPS28-211ENST00000530790 A0A1W2PQ45 241 aaPredicted RBP15.57■□□□□ 0.08
VPS28-211ENST00000530790 A0A1W2PQY0 241 aa15.57■□□□□ 0.08
VPS28-211ENST00000530790 PARP1P09874 1014 aaKnown RBP15.57■□□□□ 0.08
VPS28-211ENST00000530790 SNX17Q15036 470 aa15.57■□□□□ 0.08
VPS28-211ENST00000530790 TRIM60Q495X7 471 aa15.57■□□□□ 0.08
VPS28-211ENST00000530790 RALYLQ86SE5 291 aaKnown RBP15.57■□□□□ 0.08
VPS28-211ENST00000530790 TSEN34Q9BSV6 310 aaKnown RBP15.57■□□□□ 0.08
VPS28-211ENST00000530790 KATNBL1Q9H079 304 aa15.57■□□□□ 0.08
VPS28-211ENST00000530790 ASTN1O14525 1302 aa15.57■□□□□ 0.08
VPS28-211ENST00000530790 ADCY6O43306 1168 aa15.56■□□□□ 0.08
VPS28-211ENST00000530790 DHX16O60231 1041 aaKnown RBP15.56■□□□□ 0.08
VPS28-211ENST00000530790 C6orf222P0C671 652 aaPredicted RBP15.56■□□□□ 0.08
VPS28-211ENST00000530790 BAATQ14032 418 aaPredicted RBP15.56■□□□□ 0.08
VPS28-211ENST00000530790 CDC37Q16543 378 aaPredicted RBP15.56■□□□□ 0.08
VPS28-211ENST00000530790 USH1GQ495M9 461 aa15.56■□□□□ 0.08
VPS28-211ENST00000530790 C1orf53Q5VUE5 145 aa15.56■□□□□ 0.08
VPS28-211ENST00000530790 SLC30A10Q6XR72 485 aa15.56■□□□□ 0.08
VPS28-211ENST00000530790 CYB5R4Q7L1T6 521 aa15.56■□□□□ 0.08
VPS28-211ENST00000530790 NUP133Q8WUM0 1156 aa15.56■□□□□ 0.08
VPS28-211ENST00000530790 LBHD1Q9BQE6 289 aaPredicted RBP15.56■□□□□ 0.08
VPS28-211ENST00000530790 UBE2OQ9C0C9 1292 aaKnown RBP15.56■□□□□ 0.08
VPS28-211ENST00000530790 UBA5Q9GZZ9 404 aa15.56■□□□□ 0.08
VPS28-211ENST00000530790 CPVLQ9H3G5 476 aa15.56■□□□□ 0.08
VPS28-211ENST00000530790 ADD3Q9UEY8 706 aaKnown RBP15.56■□□□□ 0.08
VPS28-211ENST00000530790 ERICH2A1L162 156 aa15.55■□□□□ 0.08
VPS28-211ENST00000530790 MOXD2PA6NHM9 499 aa15.55■□□□□ 0.08
VPS28-211ENST00000530790 CALML3P27482 149 aa15.55■□□□□ 0.08
VPS28-211ENST00000530790 CST5P28325 142 aaPredicted RBP15.55■□□□□ 0.08
VPS28-211ENST00000530790 ACLYP53396 1101 aa15.55■□□□□ 0.08
VPS28-211ENST00000530790 MDM2Q00987 491 aaPredicted RBP15.55■□□□□ 0.08
VPS28-211ENST00000530790 SART3Q15020 963 aaKnown RBP15.55■□□□□ 0.08
VPS28-211ENST00000530790 RNF207Q6ZRF8 634 aa15.55■□□□□ 0.08
VPS28-211ENST00000530790 KIAA1211Q6ZU35 1233 aa15.55■□□□□ 0.08
VPS28-211ENST00000530790 NOL8Q76FK4 1167 aaKnown RBP15.55■□□□□ 0.08
VPS28-211ENST00000530790 FBXO16Q8IX29 292 aaPredicted RBP15.55■□□□□ 0.08
VPS28-211ENST00000530790 PCSK9Q8NBP7 692 aaKnown RBP15.55■□□□□ 0.08
VPS28-211ENST00000530790 NCOA7Q8NI08 942 aa15.55■□□□□ 0.08
VPS28-211ENST00000530790 CLEC4DQ8WXI8 215 aa15.55■□□□□ 0.08
VPS28-211ENST00000530790 UPF3AQ9H1J1 476 aaKnown RBP15.55■□□□□ 0.08
VPS28-211ENST00000530790 PRDM5Q9NQX1 630 aaPredicted RBP15.55■□□□□ 0.08
VPS28-211ENST00000530790 STARD7Q9NQZ5 370 aa15.55■□□□□ 0.08
VPS28-211ENST00000530790 PCDH10Q9P2E7 1040 aa15.55■□□□□ 0.08
VPS28-211ENST00000530790 LOC102724159A0A0B4J2E5 919 aa15.54■□□□□ 0.08
VPS28-211ENST00000530790 MYADML2A6NDP7 307 aa15.54■□□□□ 0.08
VPS28-211ENST00000530790 ALDH5A1P51649 535 aaPredicted RBP15.54■□□□□ 0.08
VPS28-211ENST00000530790 GJA9P57773 515 aa15.54■□□□□ 0.08
VPS28-211ENST00000530790 TNFAIP2Q03169 654 aa15.54■□□□□ 0.08
VPS28-211ENST00000530790 PWP2Q15269 919 aaKnown RBP15.54■□□□□ 0.08
VPS28-211ENST00000530790 SEC23AQ15436 765 aa15.54■□□□□ 0.08
VPS28-211ENST00000530790 EEPD1Q7L9B9 569 aa15.54■□□□□ 0.08
VPS28-211ENST00000530790 TLK2Q86UE8 772 aa15.54■□□□□ 0.08
VPS28-211ENST00000530790 ADGRF4Q8IZF3 695 aa15.54■□□□□ 0.08
VPS28-211ENST00000530790 TDHQ8IZJ6 230 aa15.54■□□□□ 0.08
VPS28-211ENST00000530790 KLHDC9Q8NEP7 349 aa15.54■□□□□ 0.08
VPS28-211ENST00000530790 PURBQ96QR8 312 aaKnown RBP15.54■□□□□ 0.08
VPS28-211ENST00000530790 MPHOSPH6Q99547 160 aaKnown RBP15.54■□□□□ 0.08
VPS28-211ENST00000530790 VTA1Q9NP79 307 aa15.54■□□□□ 0.08
VPS28-211ENST00000530790 RBM8AQ9Y5S9 174 aaKnown RBP15.54■□□□□ 0.08
VPS28-211ENST00000530790 DDX49Q9Y6V7 483 aaKnown RBP15.54■□□□□ 0.08
VPS28-211ENST00000530790 MCM3APO60318 1980 aa15.54■□□□□ 0.08
VPS28-211ENST00000530790 LCTP09848 1927 aa15.54■□□□□ 0.08
VPS28-211ENST00000530790 ABCB11O95342 1321 aa15.53■□□□□ 0.08
VPS28-211ENST00000530790 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.53■□□□□ 0.08
VPS28-211ENST00000530790 E7EWF7 191 aa15.53■□□□□ 0.08
VPS28-211ENST00000530790 IFIT3O14879 490 aaKnown RBP15.53■□□□□ 0.08
VPS28-211ENST00000530790 RPS6P62753 249 aaKnown RBP15.53■□□□□ 0.08
VPS28-211ENST00000530790 KCNA10Q16322 511 aa15.53■□□□□ 0.08
VPS28-211ENST00000530790 BMP2KLQ5H9B9 411 aa15.53■□□□□ 0.08
VPS28-211ENST00000530790 MORC4Q8TE76 937 aa15.53■□□□□ 0.08
VPS28-211ENST00000530790 MAP4K1Q92918 833 aa15.53■□□□□ 0.08
VPS28-211ENST00000530790 GLT1D1Q96MS3 346 aa15.53■□□□□ 0.08
VPS28-211ENST00000530790 PDLIM7Q9NR12 457 aa15.53■□□□□ 0.08
VPS28-211ENST00000530790 TAF6LQ9Y6J9 622 aa15.53■□□□□ 0.08
VPS28-211ENST00000530790 SMCHD1A6NHR9 2005 aa15.53■□□□□ 0.08
VPS28-211ENST00000530790 LTBP2Q14767 1821 aa15.52■□□□□ 0.08
VPS28-211ENST00000530790 PQBP1O60828 265 aaKnown RBP15.52■□□□□ 0.08
VPS28-211ENST00000530790 ASGR1P07306 291 aa15.52■□□□□ 0.08
VPS28-211ENST00000530790 TLE2Q04725 743 aa15.52■□□□□ 0.08
VPS28-211ENST00000530790 QRICH1Q2TAL8 776 aa15.52■□□□□ 0.08
VPS28-211ENST00000530790 GNASQ5JWF2 1037 aa15.52■□□□□ 0.08
VPS28-211ENST00000530790 CCSAPQ6IQ19 270 aaPredicted RBP15.52■□□□□ 0.08
VPS28-211ENST00000530790 STOX1Q6ZVD7 989 aa15.52■□□□□ 0.08
VPS28-211ENST00000530790 ESYT1Q9BSJ8 1104 aa15.52■□□□□ 0.08
VPS28-211ENST00000530790 ELP1O95163 1332 aa15.51■□□□□ 0.07
VPS28-211ENST00000530790 B4DLN1 442 aa15.51■□□□□ 0.07
VPS28-211ENST00000530790 CLTBP09497 229 aa15.51■□□□□ 0.07
VPS28-211ENST00000530790 SMPD1P17405 629 aa15.51■□□□□ 0.07
VPS28-211ENST00000530790 MRPL12P52815 198 aaKnown RBP15.51■□□□□ 0.07
VPS28-211ENST00000530790 IRX5P78411 483 aaPredicted RBP15.51■□□□□ 0.07
VPS28-211ENST00000530790 PDE4DQ08499 809 aa15.51■□□□□ 0.07
VPS28-211ENST00000530790 WTAPQ15007 396 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms