RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 CCPG1Q9ULG6 757 aa17.73■□□□□ 0.43
LSM1-203ENST00000520755 RIPK3Q9Y572 518 aa17.73■□□□□ 0.43
LSM1-203ENST00000520755 ICAM1P05362 532 aa17.72■□□□□ 0.43
LSM1-203ENST00000520755 ALAS1P13196 640 aa17.72■□□□□ 0.43
LSM1-203ENST00000520755 PKN1Q16512 942 aa17.72■□□□□ 0.43
LSM1-203ENST00000520755 GPR142Q7Z601 462 aa17.72■□□□□ 0.43
LSM1-203ENST00000520755 PLEKHH3Q7Z736 793 aa17.72■□□□□ 0.43
LSM1-203ENST00000520755 SHCBP1Q8NEM2 672 aa17.72■□□□□ 0.43
LSM1-203ENST00000520755 COA7Q96BR5 231 aa17.72■□□□□ 0.43
LSM1-203ENST00000520755 SHISA4Q96DD7 197 aa17.72■□□□□ 0.43
LSM1-203ENST00000520755 DDX11Q96FC9 970 aa17.72■□□□□ 0.43
LSM1-203ENST00000520755 PIGSQ96S52 555 aa17.72■□□□□ 0.43
LSM1-203ENST00000520755 SLC26A6Q9BXS9 759 aa17.72■□□□□ 0.43
LSM1-203ENST00000520755 MROH8Q9H579 483 aa17.72■□□□□ 0.43
LSM1-203ENST00000520755 PRPF3O43395 683 aaKnown RBP17.71■□□□□ 0.43
LSM1-203ENST00000520755 PPP1R11O60927 126 aaPredicted RBP17.71■□□□□ 0.43
LSM1-203ENST00000520755 CDKL5O76039 1030 aa17.71■□□□□ 0.43
LSM1-203ENST00000520755 COPB2P35606 906 aa17.71■□□□□ 0.43
LSM1-203ENST00000520755 QRICH1Q2TAL8 776 aa17.71■□□□□ 0.43
LSM1-203ENST00000520755 USH1GQ495M9 461 aa17.71■□□□□ 0.43
LSM1-203ENST00000520755 OTOP1Q7RTM1 612 aa17.71■□□□□ 0.43
LSM1-203ENST00000520755 SPRYD3Q8NCJ5 442 aa17.71■□□□□ 0.43
LSM1-203ENST00000520755 AIFM3Q96NN9 605 aa17.71■□□□□ 0.43
LSM1-203ENST00000520755 IVNS1ABPQ9Y6Y0 642 aa17.71■□□□□ 0.43
LSM1-203ENST00000520755 PLXNA1Q9UIW2 1896 aa17.71■□□□□ 0.43
LSM1-203ENST00000520755 ZBTB5O15062 677 aa17.7■□□□□ 0.42
LSM1-203ENST00000520755 HOXD10P28358 340 aa17.7■□□□□ 0.42
LSM1-203ENST00000520755 GJB2P29033 226 aa17.7■□□□□ 0.42
LSM1-203ENST00000520755 SSRP1Q08945 709 aaKnown RBP17.7■□□□□ 0.42
LSM1-203ENST00000520755 CPLX2Q6PUV4 134 aaKnown RBP17.7■□□□□ 0.42
LSM1-203ENST00000520755 CTU1Q7Z7A3 348 aaKnown RBP17.7■□□□□ 0.42
LSM1-203ENST00000520755 RRP36Q96EU6 259 aaKnown RBP17.7■□□□□ 0.42
LSM1-203ENST00000520755 RNF146Q9NTX7 359 aa17.7■□□□□ 0.42
LSM1-203ENST00000520755 ORC3Q9UBD5 711 aaPredicted RBP17.7■□□□□ 0.42
LSM1-203ENST00000520755 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.7■□□□□ 0.42
LSM1-203ENST00000520755 V9GY48 417 aaPredicted RBP17.7■□□□□ 0.42
LSM1-203ENST00000520755 ZNF236Q9UL36 1845 aa17.7■□□□□ 0.42
LSM1-203ENST00000520755 GNRH1P01148 92 aa17.69■□□□□ 0.42
LSM1-203ENST00000520755 PRKCZQ05513 592 aa17.69■□□□□ 0.42
LSM1-203ENST00000520755 TKFCQ3LXA3 575 aa17.69■□□□□ 0.42
LSM1-203ENST00000520755 FBXO11Q86XK2 927 aa17.69■□□□□ 0.42
LSM1-203ENST00000520755 TRERF1Q96PN7 1200 aa17.69■□□□□ 0.42
LSM1-203ENST00000520755 SEC63Q9UGP8 760 aaKnown RBP17.69■□□□□ 0.42
LSM1-203ENST00000520755 SRRDQ9UH36 339 aa17.69■□□□□ 0.42
LSM1-203ENST00000520755 PNMA2Q9UL42 364 aa17.69■□□□□ 0.42
LSM1-203ENST00000520755 GABRQQ9UN88 632 aa17.69■□□□□ 0.42
LSM1-203ENST00000520755 DEXIO95424 95 aa17.68■□□□□ 0.42
LSM1-203ENST00000520755 FCER1AP12319 257 aa17.68■□□□□ 0.42
LSM1-203ENST00000520755 PTPREP23469 700 aa17.68■□□□□ 0.42
LSM1-203ENST00000520755 HMGN5P82970 282 aaKnown RBP17.68■□□□□ 0.42
LSM1-203ENST00000520755 PFKFB3Q16875 520 aaPredicted RBP17.68■□□□□ 0.42
LSM1-203ENST00000520755 MUM1L1Q5H9M0 696 aa17.68■□□□□ 0.42
LSM1-203ENST00000520755 WWC2Q6AWC2 1192 aa17.68■□□□□ 0.42
LSM1-203ENST00000520755 TYW1BQ6NUM6 668 aa17.68■□□□□ 0.42
LSM1-203ENST00000520755 TRIM22Q8IYM9 498 aa17.68■□□□□ 0.42
LSM1-203ENST00000520755 CHST13Q8NET6 341 aa17.68■□□□□ 0.42
LSM1-203ENST00000520755 GPKOWQ92917 476 aaPredicted RBP eCLIP17.68■□□□□ 0.42
LSM1-203ENST00000520755 IPO9Q96P70 1041 aaKnown RBP17.68■□□□□ 0.42
LSM1-203ENST00000520755 MMP19Q99542 508 aa17.68■□□□□ 0.42
LSM1-203ENST00000520755 NUDT12Q9BQG2 462 aa17.68■□□□□ 0.42
LSM1-203ENST00000520755 AMNQ9BXJ7 453 aa17.68■□□□□ 0.42
LSM1-203ENST00000520755 ACAD9Q9H845 621 aa17.68■□□□□ 0.42
LSM1-203ENST00000520755 FBXO40Q9UH90 709 aa17.68■□□□□ 0.42
LSM1-203ENST00000520755 SMC3Q9UQE7 1217 aa17.68■□□□□ 0.42
LSM1-203ENST00000520755 PNMA6FA0A0J9YX94 578 aa17.67■□□□□ 0.42
LSM1-203ENST00000520755 SLC15A5A6NIM6 579 aa17.67■□□□□ 0.42
LSM1-203ENST00000520755 STRNO43815 780 aa17.67■□□□□ 0.42
LSM1-203ENST00000520755 SCG2P13521 617 aa17.67■□□□□ 0.42
LSM1-203ENST00000520755 FLT3LGP49771 235 aa17.67■□□□□ 0.42
LSM1-203ENST00000520755 GRB14Q14449 540 aa17.67■□□□□ 0.42
LSM1-203ENST00000520755 KCTD2Q14681 263 aa17.67■□□□□ 0.42
LSM1-203ENST00000520755 MORN1Q5T089 497 aa17.67■□□□□ 0.42
LSM1-203ENST00000520755 SOCS4Q8WXH5 440 aa17.67■□□□□ 0.42
LSM1-203ENST00000520755 GJB4Q9NTQ9 266 aa17.67■□□□□ 0.42
LSM1-203ENST00000520755 ABCB11O95342 1321 aa17.67■□□□□ 0.42
LSM1-203ENST00000520755 LRRC37A2A6NM11 1700 aa17.67■□□□□ 0.42
LSM1-203ENST00000520755 MYH7BA7E2Y1 1941 aa17.66■□□□□ 0.42
LSM1-203ENST00000520755 STXBP3O00186 592 aa17.66■□□□□ 0.42
LSM1-203ENST00000520755 CYP2B6P20813 491 aa17.66■□□□□ 0.42
LSM1-203ENST00000520755 ADORA2AP29274 412 aa17.66■□□□□ 0.42
LSM1-203ENST00000520755 DDIT3P35638 169 aa17.66■□□□□ 0.42
LSM1-203ENST00000520755 ANKRD35Q8N283 1001 aa17.66■□□□□ 0.42
LSM1-203ENST00000520755 RAET1EQ8TD07 263 aa17.66■□□□□ 0.42
LSM1-203ENST00000520755 RBM27Q9P2N5 1060 aaKnown RBP17.66■□□□□ 0.42
LSM1-203ENST00000520755 GJD2Q9UKL4 321 aa17.66■□□□□ 0.42
LSM1-203ENST00000520755 PTPN22Q9Y2R2 807 aa17.66■□□□□ 0.42
LSM1-203ENST00000520755 PCDHA1Q9Y5I3 950 aa17.66■□□□□ 0.42
LSM1-203ENST00000520755 NFIBO00712 420 aa17.65■□□□□ 0.42
LSM1-203ENST00000520755 HSP90AA1P07900 732 aaKnown RBP17.65■□□□□ 0.42
LSM1-203ENST00000520755 RGS2P41220 211 aa17.65■□□□□ 0.42
LSM1-203ENST00000520755 FOSBP53539 338 aa17.65■□□□□ 0.42
LSM1-203ENST00000520755 PRMT2P55345 433 aa17.65■□□□□ 0.42
LSM1-203ENST00000520755 MAP2K5Q13163 448 aa17.65■□□□□ 0.42
LSM1-203ENST00000520755 NSMFQ6X4W1 530 aa17.65■□□□□ 0.42
LSM1-203ENST00000520755 ABRAQ8N0Z2 381 aa17.65■□□□□ 0.42
LSM1-203ENST00000520755 ALG1Q9BT22 464 aa17.65■□□□□ 0.42
LSM1-203ENST00000520755 VPS54Q9P1Q0 977 aa17.65■□□□□ 0.42
LSM1-203ENST00000520755 PTCH2Q9Y6C5 1203 aa17.65■□□□□ 0.42
LSM1-203ENST00000520755 PGK2P07205 417 aa17.64■□□□□ 0.41
LSM1-203ENST00000520755 AKAP17AQ02040 695 aaKnown RBP17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms