RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 ZNF543Q08ER8 600 aa20.54■□□□□ 0.88
DDX41-217ENST00000515562 GPATCH4Q5T3I0 446 aaKnown RBP20.54■□□□□ 0.88
DDX41-217ENST00000515562 PCSK9Q8NBP7 692 aaKnown RBP20.54■□□□□ 0.88
DDX41-217ENST00000515562 UPF3AQ9H1J1 476 aaKnown RBP20.54■□□□□ 0.88
DDX41-217ENST00000515562 STARD7Q9NQZ5 370 aa20.54■□□□□ 0.88
DDX41-217ENST00000515562 RAD50Q92878 1312 aa20.53■□□□□ 0.88
DDX41-217ENST00000515562 SOWAHBA6NEL2 793 aa20.53■□□□□ 0.88
DDX41-217ENST00000515562 KDM4AO75164 1064 aa20.53■□□□□ 0.88
DDX41-217ENST00000515562 C6orf222P0C671 652 aaPredicted RBP20.53■□□□□ 0.88
DDX41-217ENST00000515562 GJA9P57773 515 aa20.53■□□□□ 0.88
DDX41-217ENST00000515562 TLE2Q04725 743 aa20.53■□□□□ 0.88
DDX41-217ENST00000515562 TTC22Q5TAA0 569 aa20.53■□□□□ 0.88
DDX41-217ENST00000515562 CCSAPQ6IQ19 270 aaPredicted RBP20.53■□□□□ 0.88
DDX41-217ENST00000515562 NSMFQ6X4W1 530 aa20.53■□□□□ 0.88
DDX41-217ENST00000515562 LCTP09848 1927 aa20.53■□□□□ 0.88
DDX41-217ENST00000515562 ADCY6O43306 1168 aa20.52■□□□□ 0.88
DDX41-217ENST00000515562 CLTBP09497 229 aa20.52■□□□□ 0.88
DDX41-217ENST00000515562 PDE4AP27815 886 aa20.52■□□□□ 0.88
DDX41-217ENST00000515562 KCNA10Q16322 511 aa20.52■□□□□ 0.88
DDX41-217ENST00000515562 GLT1D1Q96MS3 346 aa20.52■□□□□ 0.88
DDX41-217ENST00000515562 ZKSCAN3Q9BRR0 538 aa20.52■□□□□ 0.88
DDX41-217ENST00000515562 ASTN1O14525 1302 aa20.52■□□□□ 0.87
DDX41-217ENST00000515562 WDR19Q8NEZ3 1342 aa20.52■□□□□ 0.87
DDX41-217ENST00000515562 MYADML2A6NDP7 307 aa20.51■□□□□ 0.87
DDX41-217ENST00000515562 PQBP1O60828 265 aaKnown RBP20.51■□□□□ 0.87
DDX41-217ENST00000515562 GSPT1P15170 499 aaKnown RBP20.51■□□□□ 0.87
DDX41-217ENST00000515562 TNFAIP2Q03169 654 aa20.51■□□□□ 0.87
DDX41-217ENST00000515562 ANKRD33Q7Z3H0 272 aa20.51■□□□□ 0.87
DDX41-217ENST00000515562 TOX2Q96NM4 488 aa20.51■□□□□ 0.87
DDX41-217ENST00000515562 KRT23Q9C075 422 aa20.51■□□□□ 0.87
DDX41-217ENST00000515562 KAT14Q9H8E8 782 aa20.51■□□□□ 0.87
DDX41-217ENST00000515562 CNNM2Q9H8M5 875 aa20.51■□□□□ 0.87
DDX41-217ENST00000515562 ADD3Q9UEY8 706 aaKnown RBP20.51■□□□□ 0.87
DDX41-217ENST00000515562 ELP1O95163 1332 aa20.51■□□□□ 0.87
DDX41-217ENST00000515562 MROH7Q68CQ1 1323 aa20.51■□□□□ 0.87
DDX41-217ENST00000515562 LOC102724159A0A0B4J2E5 919 aa20.5■□□□□ 0.87
DDX41-217ENST00000515562 TRIM43BA6NCK2 446 aa20.5■□□□□ 0.87
DDX41-217ENST00000515562 B4E1Z4 1266 aa20.5■□□□□ 0.87
DDX41-217ENST00000515562 NKX3-2P78367 333 aa20.5■□□□□ 0.87
DDX41-217ENST00000515562 PWP2Q15269 919 aaKnown RBP20.5■□□□□ 0.87
DDX41-217ENST00000515562 GNASQ5JWF2 1037 aa20.5■□□□□ 0.87
DDX41-217ENST00000515562 PNMA1Q8ND90 353 aa20.5■□□□□ 0.87
DDX41-217ENST00000515562 TRIM43Q96BQ3 446 aaPredicted RBP20.5■□□□□ 0.87
DDX41-217ENST00000515562 ZSCAN10Q96SZ4 725 aaPredicted RBP20.5■□□□□ 0.87
DDX41-217ENST00000515562 VTA1Q9NP79 307 aa20.5■□□□□ 0.87
DDX41-217ENST00000515562 DCDC2CA8MYV0 355 aa20.49■□□□□ 0.87
DDX41-217ENST00000515562 NFIBO00712 420 aa20.49■□□□□ 0.87
DDX41-217ENST00000515562 ASGR1P07306 291 aa20.49■□□□□ 0.87
DDX41-217ENST00000515562 BAATQ14032 418 aaPredicted RBP20.49■□□□□ 0.87
DDX41-217ENST00000515562 NOL8Q76FK4 1167 aaKnown RBP20.49■□□□□ 0.87
DDX41-217ENST00000515562 SH3RF1Q7Z6J0 888 aa20.49■□□□□ 0.87
DDX41-217ENST00000515562 TLK2Q86UE8 772 aa20.49■□□□□ 0.87
DDX41-217ENST00000515562 MORC4Q8TE76 937 aa20.49■□□□□ 0.87
DDX41-217ENST00000515562 RUFY2Q8WXA3 655 aa20.49■□□□□ 0.87
DDX41-217ENST00000515562 ANKS1AQ92625 1134 aa20.49■□□□□ 0.87
DDX41-217ENST00000515562 BADQ92934 168 aa20.49■□□□□ 0.87
DDX41-217ENST00000515562 TNKSO95271 1327 aa20.49■□□□□ 0.87
DDX41-217ENST00000515562 PTPDC1A2A3K4 754 aa20.48■□□□□ 0.87
DDX41-217ENST00000515562 KIAA0355O15063 1070 aa20.48■□□□□ 0.87
DDX41-217ENST00000515562 IRX6P78412 446 aaPredicted RBP20.48■□□□□ 0.87
DDX41-217ENST00000515562 ASPRV1Q53RT3 343 aa20.48■□□□□ 0.87
DDX41-217ENST00000515562 FBXO16Q8IX29 292 aaPredicted RBP20.48■□□□□ 0.87
DDX41-217ENST00000515562 ENAHQ8N8S7 591 aaPredicted RBP20.48■□□□□ 0.87
DDX41-217ENST00000515562 UBAC1Q9BSL1 405 aa20.48■□□□□ 0.87
DDX41-217ENST00000515562 IL25Q9H293 177 aa20.48■□□□□ 0.87
DDX41-217ENST00000515562 GNEQ9Y223 722 aaKnown RBP20.48■□□□□ 0.87
DDX41-217ENST00000515562 A0A0U1RQG5 324 aaPredicted RBP20.47■□□□□ 0.87
DDX41-217ENST00000515562 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.47■□□□□ 0.87
DDX41-217ENST00000515562 GOLGA8HP0CJ92 632 aa20.47■□□□□ 0.87
DDX41-217ENST00000515562 ALDH5A1P51649 535 aaPredicted RBP20.47■□□□□ 0.87
DDX41-217ENST00000515562 SLC30A10Q6XR72 485 aa20.47■□□□□ 0.87
DDX41-217ENST00000515562 RNF207Q6ZRF8 634 aa20.47■□□□□ 0.87
DDX41-217ENST00000515562 CLEC4DQ8WXI8 215 aa20.47■□□□□ 0.87
DDX41-217ENST00000515562 MPHOSPH6Q99547 160 aaKnown RBP20.47■□□□□ 0.87
DDX41-217ENST00000515562 AP5M1Q9H0R1 490 aa20.47■□□□□ 0.87
DDX41-217ENST00000515562 TMEM39AQ9NV64 488 aa20.47■□□□□ 0.87
DDX41-217ENST00000515562 ZSWIM5Q9P217 1185 aa20.47■□□□□ 0.87
DDX41-217ENST00000515562 CTAGE5O15320 804 aa20.46■□□□□ 0.87
DDX41-217ENST00000515562 RAG1P15918 1043 aa20.46■□□□□ 0.87
DDX41-217ENST00000515562 IRX5P78411 483 aaPredicted RBP20.46■□□□□ 0.87
DDX41-217ENST00000515562 FAAP100Q0VG06 881 aa20.46■□□□□ 0.87
DDX41-217ENST00000515562 IQSEC1Q6DN90 963 aa20.46■□□□□ 0.87
DDX41-217ENST00000515562 EEPD1Q7L9B9 569 aa20.46■□□□□ 0.87
DDX41-217ENST00000515562 DEFB123Q8N688 67 aa20.46■□□□□ 0.87
DDX41-217ENST00000515562 Q9Y3F1 56 aa20.46■□□□□ 0.87
DDX41-217ENST00000515562 ZEB2O60315 1214 aa20.45■□□□□ 0.86
DDX41-217ENST00000515562 CABYRO75952 493 aa20.45■□□□□ 0.86
DDX41-217ENST00000515562 SMPD1P17405 629 aa20.45■□□□□ 0.86
DDX41-217ENST00000515562 CALML3P27482 149 aa20.45■□□□□ 0.86
DDX41-217ENST00000515562 FSCN1Q16658 493 aaKnown RBP20.45■□□□□ 0.86
DDX41-217ENST00000515562 TAPT1Q6NXT6 567 aa20.45■□□□□ 0.86
DDX41-217ENST00000515562 VTI1AQ96AJ9 217 aa20.45■□□□□ 0.86
DDX41-217ENST00000515562 PURBQ96QR8 312 aaKnown RBP20.45■□□□□ 0.86
DDX41-217ENST00000515562 MAF1Q9H063 256 aa20.45■□□□□ 0.86
DDX41-217ENST00000515562 DDX49Q9Y6V7 483 aaKnown RBP20.45■□□□□ 0.86
DDX41-217ENST00000515562 ARVCFO00192 962 aa20.44■□□□□ 0.86
DDX41-217ENST00000515562 PARP1P09874 1014 aaKnown RBP20.44■□□□□ 0.86
DDX41-217ENST00000515562 CHMLP26374 656 aa20.44■□□□□ 0.86
DDX41-217ENST00000515562 CDK7P50613 346 aa20.44■□□□□ 0.86
DDX41-217ENST00000515562 RPS6P62753 249 aaKnown RBP20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 134.4 ms