RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 PARP14Q460N5 1801 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 FOXP2O15409 715 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 FGAP02671 866 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 TPM2P07951 284 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 PTMSP20962 102 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 NT5C2P49902 561 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 MFAP1P55081 439 aaKnown RBP9.47□□□□□ -0.89
SCN1A-207ENST00000507401 PLS1Q14651 629 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 HABP4Q5JVS0 413 aaKnown RBP9.47□□□□□ -0.89
SCN1A-207ENST00000507401 METTL3Q86U44 580 aaKnown RBP9.47□□□□□ -0.89
SCN1A-207ENST00000507401 NCAPG2Q86XI2 1143 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 PLEKHM2Q8IWE5 1019 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 STK11IPQ8N1F8 1099 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 REPS2Q8NFH8 660 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 NPLOC4Q8TAT6 608 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 MAP7D2Q96T17 732 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 SLF1Q9BQI6 1058 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 FBXO28Q9NVF7 368 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 FLRT1Q9NZU1 646 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 NRBP1Q9UHY1 535 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 FEM1BQ9UK73 627 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 ZNF214Q9UL59 606 aaPredicted RBP9.47□□□□□ -0.89
SCN1A-207ENST00000507401 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.47□□□□□ -0.89
SCN1A-207ENST00000507401 ZNF236Q9UL36 1845 aa9.47□□□□□ -0.89
SCN1A-207ENST00000507401 ZNFX1Q9P2E3 1918 aaKnown RBP9.46□□□□□ -0.89
SCN1A-207ENST00000507401 ORC4O43929 436 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 RAD21O60216 631 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 PLA2G6O60733 806 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 COBLO75128 1261 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 ZBED4O75132 1171 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 HSPD1P10809 573 aaKnown RBP9.46□□□□□ -0.9
SCN1A-207ENST00000507401 PCP11498 1178 aaKnown RBP9.46□□□□□ -0.9
SCN1A-207ENST00000507401 COL6A1P12109 1028 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 BMP3P12645 472 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 SDSP20132 328 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 CCND3P30281 292 aaPredicted RBP9.46□□□□□ -0.9
SCN1A-207ENST00000507401 NOVP48745 357 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 OAZ1P54368 228 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 KCTD2Q14681 263 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 SLFN13Q68D06 897 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 CCDC129Q6ZRS4 1044 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 ZNF516Q92618 1163 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 GMCL1Q96IK5 515 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 TEX13BQ9BXU2 312 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 C11orf49Q9H6J7 331 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 ZMYM6O95789 1325 aa9.46□□□□□ -0.9
SCN1A-207ENST00000507401 MYH4Q9Y623 1939 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 TSPY2A6NKD2 308 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 HIP1O00291 1037 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 OATP04181 439 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 CYBAP13498 195 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 CYP2C19P33261 490 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 TERF1P54274 439 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 FAM47AQ5JRC9 791 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 VPS53Q5VIR6 699 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.45□□□□□ -0.9
SCN1A-207ENST00000507401 MSL3Q8N5Y2 521 aaKnown RBP9.45□□□□□ -0.9
SCN1A-207ENST00000507401 ARRDC4Q8NCT1 418 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 CHURC1Q8WUH1 139 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 RILPL2Q969X0 211 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 MAML3Q96JK9 1138 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 FAM227BQ96M60 508 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 MMP19Q99542 508 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 NUP88Q99567 741 aaPredicted RBP9.45□□□□□ -0.9
SCN1A-207ENST00000507401 IL21Q9HBE4 155 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 SLC38A10Q9HBR0 1119 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 IL17RBQ9NRM6 502 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 TCP11L1Q9NUJ3 509 aa9.45□□□□□ -0.9
SCN1A-207ENST00000507401 DDX20Q9UHI6 824 aaKnown RBP9.45□□□□□ -0.9
SCN1A-207ENST00000507401 COL11A1P12107 1806 aaPredicted RBP9.45□□□□□ -0.9
SCN1A-207ENST00000507401 A0A0D9SFI3 127 aa9.44□□□□□ -0.9
SCN1A-207ENST00000507401 SEPT4O43236 478 aa9.44□□□□□ -0.9
SCN1A-207ENST00000507401 CNGA1P29973 690 aa9.44□□□□□ -0.9
SCN1A-207ENST00000507401 CTDSPL2Q05D32 466 aa9.44□□□□□ -0.9
SCN1A-207ENST00000507401 NMIQ13287 307 aaPredicted RBP9.44□□□□□ -0.9
SCN1A-207ENST00000507401 ZNF792Q3KQV3 632 aa9.44□□□□□ -0.9
SCN1A-207ENST00000507401 RCSD1Q6JBY9 416 aa9.44□□□□□ -0.9
SCN1A-207ENST00000507401 FAM160B2Q86V87 743 aa9.44□□□□□ -0.9
SCN1A-207ENST00000507401 TRPV1Q8NER1 839 aa9.44□□□□□ -0.9
SCN1A-207ENST00000507401 CHST13Q8NET6 341 aa9.44□□□□□ -0.9
SCN1A-207ENST00000507401 DIS3LQ8TF46 1054 aaKnown RBP9.44□□□□□ -0.9
SCN1A-207ENST00000507401 STAG1Q8WVM7 1258 aa9.44□□□□□ -0.9
SCN1A-207ENST00000507401 TTC14Q96N46 770 aa9.44□□□□□ -0.9
SCN1A-207ENST00000507401 PHOX2BQ99453 314 aa9.44□□□□□ -0.9
SCN1A-207ENST00000507401 TINF2Q9BSI4 451 aa9.44□□□□□ -0.9
SCN1A-207ENST00000507401 FBXO40Q9UH90 709 aa9.44□□□□□ -0.9
SCN1A-207ENST00000507401 STX8Q9UNK0 236 aa9.44□□□□□ -0.9
SCN1A-207ENST00000507401 CTDP1Q9Y5B0 961 aaPredicted RBP9.44□□□□□ -0.9
SCN1A-207ENST00000507401 CCDC171Q6TFL3 1326 aa9.43□□□□□ -0.9
SCN1A-207ENST00000507401 DNAJC25-GNG10A0A024R161 153 aa9.43□□□□□ -0.9
SCN1A-207ENST00000507401 A0A1W2PPC1 479 aa9.43□□□□□ -0.9
SCN1A-207ENST00000507401 TMEM232C9JQI7 657 aa9.43□□□□□ -0.9
SCN1A-207ENST00000507401 DNM1LO00429 736 aa9.43□□□□□ -0.9
SCN1A-207ENST00000507401 RANBP6O60518 1105 aaKnown RBP9.43□□□□□ -0.9
SCN1A-207ENST00000507401 SLC1A4P43007 532 aa9.43□□□□□ -0.9
SCN1A-207ENST00000507401 STAT2P52630 851 aa9.43□□□□□ -0.9
SCN1A-207ENST00000507401 SNRNP48Q6IEG0 339 aaKnown RBP9.43□□□□□ -0.9
SCN1A-207ENST00000507401 MAMDC4Q6UXC1 1216 aa9.43□□□□□ -0.9
SCN1A-207ENST00000507401 MFSD6Q6ZSS7 791 aa9.43□□□□□ -0.9
SCN1A-207ENST00000507401 MTERF4Q7Z6M4 381 aaKnown RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms