RNA–Protein interactions for RNA: ENST00000498645.1

LSAMP-206, Transcript of limbic system associated membrane protein, humanhuman

TSL 3

Gene LSAMP, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-206ENST00000498645 KATNBL1Q9H079 304 aa13.02□□□□□ -0.33
LSAMP-206ENST00000498645 UPF3AQ9H1J1 476 aaKnown RBP13.02□□□□□ -0.33
LSAMP-206ENST00000498645 GPCPD1Q9NPB8 672 aa13.02□□□□□ -0.33
LSAMP-206ENST00000498645 CCDC171Q6TFL3 1326 aa13.02□□□□□ -0.33
LSAMP-206ENST00000498645 LAMA4Q16363 1823 aa13.02□□□□□ -0.33
LSAMP-206ENST00000498645 CUL9Q8IWT3 2517 aa13.01□□□□□ -0.33
LSAMP-206ENST00000498645 ASB14A6NK59 587 aa13.01□□□□□ -0.33
LSAMP-206ENST00000498645 DLL1O00548 723 aa13.01□□□□□ -0.33
LSAMP-206ENST00000498645 TOP1P11387 765 aaKnown RBP13.01□□□□□ -0.33
LSAMP-206ENST00000498645 PTGS1P23219 599 aa13.01□□□□□ -0.33
LSAMP-206ENST00000498645 GJA9P57773 515 aa13.01□□□□□ -0.33
LSAMP-206ENST00000498645 SYDE2Q5VT97 1194 aa13.01□□□□□ -0.33
LSAMP-206ENST00000498645 FAM109BQ6ICB4 259 aaPredicted RBP13.01□□□□□ -0.33
LSAMP-206ENST00000498645 MFSD6Q6ZSS7 791 aa13.01□□□□□ -0.33
LSAMP-206ENST00000498645 ANKRD33Q7Z3H0 272 aa13.01□□□□□ -0.33
LSAMP-206ENST00000498645 TLK2Q86UE8 772 aa13.01□□□□□ -0.33
LSAMP-206ENST00000498645 FBXO16Q8IX29 292 aaPredicted RBP13.01□□□□□ -0.33
LSAMP-206ENST00000498645 PURBQ96QR8 312 aaKnown RBP13.01□□□□□ -0.33
LSAMP-206ENST00000498645 RWDD1Q9H446 243 aaPredicted RBP13.01□□□□□ -0.33
LSAMP-206ENST00000498645 CYP39A1Q9NYL5 469 aa13.01□□□□□ -0.33
LSAMP-206ENST00000498645 UNC80Q8N2C7 3258 aa13□□□□□ -0.33
LSAMP-206ENST00000498645 ASTN1O14525 1302 aa13□□□□□ -0.33
LSAMP-206ENST00000498645 ELP1O95163 1332 aa13□□□□□ -0.33
LSAMP-206ENST00000498645 MROH7Q68CQ1 1323 aa13□□□□□ -0.33
LSAMP-206ENST00000498645 A0A0U1RQG5 324 aaPredicted RBP13□□□□□ -0.33
LSAMP-206ENST00000498645 ICAM1P05362 532 aa13□□□□□ -0.33
LSAMP-206ENST00000498645 FGRP09769 529 aa13□□□□□ -0.33
LSAMP-206ENST00000498645 AKNAD1Q5T1N1 836 aa13□□□□□ -0.33
LSAMP-206ENST00000498645 TBC1D10CQ8IV04 446 aa13□□□□□ -0.33
LSAMP-206ENST00000498645 TOX2Q96NM4 488 aa13□□□□□ -0.33
LSAMP-206ENST00000498645 PPP1R12CQ9BZL4 782 aa13□□□□□ -0.33
LSAMP-206ENST00000498645 RANBP17Q9H2T7 1088 aaKnown RBP13□□□□□ -0.33
LSAMP-206ENST00000498645 PDGFCQ9NRA1 345 aa13□□□□□ -0.33
LSAMP-206ENST00000498645 EYSQ5T1H1 3165 aa12.99□□□□□ -0.33
LSAMP-206ENST00000498645 ZMYM6O95789 1325 aa12.99□□□□□ -0.33
LSAMP-206ENST00000498645 NEDD4P46934 1319 aa12.99□□□□□ -0.33
LSAMP-206ENST00000498645 PTPDC1A2A3K4 754 aa12.99□□□□□ -0.33
LSAMP-206ENST00000498645 ARVCFO00192 962 aa12.99□□□□□ -0.33
LSAMP-206ENST00000498645 TLR3O15455 904 aaKnown RBP12.99□□□□□ -0.33
LSAMP-206ENST00000498645 DYNC1LI2O43237 492 aaPredicted RBP12.99□□□□□ -0.33
LSAMP-206ENST00000498645 SMPD1P17405 629 aa12.99□□□□□ -0.33
LSAMP-206ENST00000498645 SDSP20132 328 aa12.99□□□□□ -0.33
LSAMP-206ENST00000498645 NOVP48745 357 aa12.99□□□□□ -0.33
LSAMP-206ENST00000498645 MFAP1P55081 439 aaKnown RBP12.99□□□□□ -0.33
LSAMP-206ENST00000498645 BAATQ14032 418 aaPredicted RBP12.99□□□□□ -0.33
LSAMP-206ENST00000498645 FSCN1Q16658 493 aaKnown RBP12.99□□□□□ -0.33
LSAMP-206ENST00000498645 CWC27Q6UX04 472 aaKnown RBP12.99□□□□□ -0.33
LSAMP-206ENST00000498645 CXCL17Q6UXB2 119 aa12.99□□□□□ -0.33
LSAMP-206ENST00000498645 CHD1LQ86WJ1 897 aa12.99□□□□□ -0.33
LSAMP-206ENST00000498645 ZKSCAN3Q9BRR0 538 aa12.99□□□□□ -0.33
LSAMP-206ENST00000498645 AP5M1Q9H0R1 490 aa12.99□□□□□ -0.33
LSAMP-206ENST00000498645 DIAPH3Q9NSV4 1193 aa12.99□□□□□ -0.33
LSAMP-206ENST00000498645 NFIBO00712 420 aa12.98□□□□□ -0.33
LSAMP-206ENST00000498645 CTAGE5O15320 804 aa12.98□□□□□ -0.33
LSAMP-206ENST00000498645 TIMP1P01033 207 aa12.98□□□□□ -0.33
LSAMP-206ENST00000498645 IGHDP01880 384 aa12.98□□□□□ -0.33
LSAMP-206ENST00000498645 PDHBP11177 359 aa12.98□□□□□ -0.33
LSAMP-206ENST00000498645 CALML3P27482 149 aa12.98□□□□□ -0.33
LSAMP-206ENST00000498645 SMAD3P84022 425 aaKnown RBP12.98□□□□□ -0.33
LSAMP-206ENST00000498645 PLEKHM2Q8IWE5 1019 aa12.98□□□□□ -0.33
LSAMP-206ENST00000498645 SMC5Q8IY18 1101 aa12.98□□□□□ -0.33
LSAMP-206ENST00000498645 EXOC6Q8TAG9 804 aa12.98□□□□□ -0.33
LSAMP-206ENST00000498645 CDX2Q99626 313 aaPredicted RBP12.98□□□□□ -0.33
LSAMP-206ENST00000498645 SEMA6BQ9H3T3 888 aa12.98□□□□□ -0.33
LSAMP-206ENST00000498645 RNF41Q9H4P4 317 aaPredicted RBP12.98□□□□□ -0.33
LSAMP-206ENST00000498645 TCP11L1Q9NUJ3 509 aa12.98□□□□□ -0.33
LSAMP-206ENST00000498645 TBX21Q9UL17 535 aa12.98□□□□□ -0.33
LSAMP-206ENST00000498645 GNEQ9Y223 722 aaKnown RBP12.98□□□□□ -0.33
LSAMP-206ENST00000498645 MYH6P13533 1939 aa12.98□□□□□ -0.33
LSAMP-206ENST00000498645 ZNF213O14771 459 aa12.97□□□□□ -0.33
LSAMP-206ENST00000498645 ZEB2O60315 1214 aa12.97□□□□□ -0.33
LSAMP-206ENST00000498645 GOLGA8HP0CJ92 632 aa12.97□□□□□ -0.33
LSAMP-206ENST00000498645 CDK7P50613 346 aa12.97□□□□□ -0.33
LSAMP-206ENST00000498645 ALDH5A1P51649 535 aaPredicted RBP12.97□□□□□ -0.33
LSAMP-206ENST00000498645 NUCB1Q02818 461 aa12.97□□□□□ -0.33
LSAMP-206ENST00000498645 AAMPQ13685 434 aa12.97□□□□□ -0.33
LSAMP-206ENST00000498645 USH1GQ495M9 461 aa12.97□□□□□ -0.33
LSAMP-206ENST00000498645 TMEM63BQ5T3F8 832 aa12.97□□□□□ -0.33
LSAMP-206ENST00000498645 MFSD5Q6N075 450 aa12.97□□□□□ -0.33
LSAMP-206ENST00000498645 BTNL9Q6UXG8 535 aa12.97□□□□□ -0.33
LSAMP-206ENST00000498645 SLC30A10Q6XR72 485 aa12.97□□□□□ -0.33
LSAMP-206ENST00000498645 KIAA1211Q6ZU35 1233 aa12.97□□□□□ -0.33
LSAMP-206ENST00000498645 TICAM2Q86XR7 235 aa12.97□□□□□ -0.33
LSAMP-206ENST00000498645 FAM126BQ8IXS8 530 aa12.97□□□□□ -0.33
LSAMP-206ENST00000498645 PIAS4Q8N2W9 510 aaPredicted RBP12.97□□□□□ -0.33
LSAMP-206ENST00000498645 MYLIPQ8WY64 445 aa12.97□□□□□ -0.33
LSAMP-206ENST00000498645 ESR2Q92731 530 aa12.97□□□□□ -0.33
LSAMP-206ENST00000498645 TTYH1Q9H313 450 aaPredicted RBP12.97□□□□□ -0.33
LSAMP-206ENST00000498645 VTA1Q9NP79 307 aa12.97□□□□□ -0.33
LSAMP-206ENST00000498645 ADD3Q9UEY8 706 aaKnown RBP12.97□□□□□ -0.33
LSAMP-206ENST00000498645 PRUNE2Q8WUY3 3088 aa12.96□□□□□ -0.33
LSAMP-206ENST00000498645 ACRP10323 421 aa12.96□□□□□ -0.33
LSAMP-206ENST00000498645 PCP11498 1178 aaKnown RBP12.96□□□□□ -0.33
LSAMP-206ENST00000498645 CSF2RAP15509 400 aa12.96□□□□□ -0.33
LSAMP-206ENST00000498645 PSMC6P62333 389 aa12.96□□□□□ -0.33
LSAMP-206ENST00000498645 ZNF543Q08ER8 600 aa12.96□□□□□ -0.33
LSAMP-206ENST00000498645 PPIGQ13427 754 aaKnown RBP eCLIP12.96□□□□□ -0.33
LSAMP-206ENST00000498645 ITGA7Q13683 1181 aa12.96□□□□□ -0.33
LSAMP-206ENST00000498645 IQSEC1Q6DN90 963 aa12.96□□□□□ -0.33
LSAMP-206ENST00000498645 TAPT1Q6NXT6 567 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms