RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 TTC19Q6DKK2 380 aaPredicted RBP17.15■□□□□ 0.34
SDF4-207ENST00000494748 SECISBP2LQ93073 1101 aaKnown RBP17.15■□□□□ 0.34
SDF4-207ENST00000494748 CAVIN3Q969G5 261 aa17.15■□□□□ 0.34
SDF4-207ENST00000494748 KBTBD4Q9NVX7 518 aa17.15■□□□□ 0.34
SDF4-207ENST00000494748 TRMT112Q9UI30 125 aaKnown RBP17.15■□□□□ 0.34
SDF4-207ENST00000494748 LCA5LO95447 670 aa17.14■□□□□ 0.34
SDF4-207ENST00000494748 HNRNPH3P31942 346 aaKnown RBP17.14■□□□□ 0.34
SDF4-207ENST00000494748 STAT6P42226 847 aa17.14■□□□□ 0.34
SDF4-207ENST00000494748 SLC7A5Q01650 507 aa17.14■□□□□ 0.34
SDF4-207ENST00000494748 CATIPQ7Z7H3 387 aa17.14■□□□□ 0.34
SDF4-207ENST00000494748 CNPY4Q8N129 248 aa17.14■□□□□ 0.34
SDF4-207ENST00000494748 RETREG2Q8NC44 543 aa17.14■□□□□ 0.34
SDF4-207ENST00000494748 MLXIPQ9HAP2 919 aa17.14■□□□□ 0.34
SDF4-207ENST00000494748 EHD2Q9NZN4 543 aa17.14■□□□□ 0.34
SDF4-207ENST00000494748 A0A1W2PQJ5 194 aa17.14■□□□□ 0.33
SDF4-207ENST00000494748 DDAH1O94760 285 aa17.14■□□□□ 0.33
SDF4-207ENST00000494748 GSCP56915 257 aaPredicted RBP17.14■□□□□ 0.33
SDF4-207ENST00000494748 FIGNQ5HY92 759 aa17.14■□□□□ 0.33
SDF4-207ENST00000494748 SLC4A9Q96Q91 983 aa17.14■□□□□ 0.33
SDF4-207ENST00000494748 M0R2N6 131 aa17.14■□□□□ 0.33
SDF4-207ENST00000494748 ARHGAP20Q9P2F6 1191 aa17.14■□□□□ 0.33
SDF4-207ENST00000494748 SCG2P13521 617 aa17.13■□□□□ 0.33
SDF4-207ENST00000494748 ANKRD18AQ8IVF6 992 aa17.13■□□□□ 0.33
SDF4-207ENST00000494748 TRIM47Q96LD4 638 aa17.13■□□□□ 0.33
SDF4-207ENST00000494748 NUP58Q9BVL2 599 aa17.13■□□□□ 0.33
SDF4-207ENST00000494748 SALL4Q9UJQ4 1053 aa17.13■□□□□ 0.33
SDF4-207ENST00000494748 PFKFB3Q16875 520 aaPredicted RBP17.13■□□□□ 0.33
SDF4-207ENST00000494748 NFRKBQ6P4R8 1299 aa17.13■□□□□ 0.33
SDF4-207ENST00000494748 PRPF38AQ8NAV1 312 aaKnown RBP17.13■□□□□ 0.33
SDF4-207ENST00000494748 EEF2KMTQ96G04 330 aa17.13■□□□□ 0.33
SDF4-207ENST00000494748 ERGIC2Q96RQ1 377 aa17.13■□□□□ 0.33
SDF4-207ENST00000494748 OSBPL9Q96SU4 736 aa17.13■□□□□ 0.33
SDF4-207ENST00000494748 NUTM2BA6NNL0 878 aaPredicted RBP17.13■□□□□ 0.33
SDF4-207ENST00000494748 NUTM2EB1AL46 878 aaPredicted RBP17.13■□□□□ 0.33
SDF4-207ENST00000494748 EPHB6O15197 1021 aa17.13■□□□□ 0.33
SDF4-207ENST00000494748 TRIM21P19474 475 aaKnown RBP17.13■□□□□ 0.33
SDF4-207ENST00000494748 ZNF384Q8TF68 577 aa17.13■□□□□ 0.33
SDF4-207ENST00000494748 PIGBQ92521 554 aa17.13■□□□□ 0.33
SDF4-207ENST00000494748 SAMM50Q9Y512 469 aa17.13■□□□□ 0.33
SDF4-207ENST00000494748 NMT2O60551 498 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 ANKRD40Q6AI12 368 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 IQCEQ6IPM2 695 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 TMEM60Q9H2L4 133 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 FLT1P17948 1338 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 MOCS3O95396 460 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 CYP7A1P22680 504 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 EPHB4P54760 987 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 TRIM58Q8NG06 486 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 DEF6Q9H4E7 631 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.12■□□□□ 0.331e-6■■■■■ 26.9
SDF4-207ENST00000494748 LOC102724159A0A0B4J2E5 919 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 CALM1P0DP23 149 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 CALM2P0DP24 149 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 CALM3P0DP25 149 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 IL2RBP14784 551 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 KIF5AQ12840 1032 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 PWP2Q15269 919 aaKnown RBP17.12■□□□□ 0.33
SDF4-207ENST00000494748 TSR1Q2NL82 804 aaKnown RBP17.12■□□□□ 0.33
SDF4-207ENST00000494748 ALS2CLQ60I27 953 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 TOM1L2Q6ZVM7 507 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 NOC3LQ8WTT2 800 aaKnown RBP17.12■□□□□ 0.33
SDF4-207ENST00000494748 PIK3R5Q8WYR1 880 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 CNOT6LQ96LI5 555 aaKnown RBP17.12■□□□□ 0.33
SDF4-207ENST00000494748 ZIM3Q96PE6 472 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 TSGA10Q9BZW7 698 aa17.12■□□□□ 0.33
SDF4-207ENST00000494748 TAF1P21675 1872 aa17.11■□□□□ 0.33
SDF4-207ENST00000494748 PES1O00541 588 aaKnown RBP17.11■□□□□ 0.33
SDF4-207ENST00000494748 EMC10Q5UCC4 262 aa17.11■□□□□ 0.33
SDF4-207ENST00000494748 EMBQ6PCB8 327 aa17.11■□□□□ 0.33
SDF4-207ENST00000494748 ZNF34Q8IZ26 560 aa17.11■□□□□ 0.33
SDF4-207ENST00000494748 PAGR1Q9BTK6 254 aa17.11■□□□□ 0.33
SDF4-207ENST00000494748 STIM2Q9P246 746 aa17.11■□□□□ 0.33
SDF4-207ENST00000494748 PLAGL2Q9UPG8 496 aa17.11■□□□□ 0.33
SDF4-207ENST00000494748 PCDHA13Q9Y5I0 950 aa17.11■□□□□ 0.33
SDF4-207ENST00000494748 TBC1D8BQ0IIM8 1120 aa17.11■□□□□ 0.33
SDF4-207ENST00000494748 PDCLQ13371 301 aa17.11■□□□□ 0.33
SDF4-207ENST00000494748 SF3B2Q13435 895 aaKnown RBP17.11■□□□□ 0.33
SDF4-207ENST00000494748 CSGALNACT2Q8N6G5 542 aa17.11■□□□□ 0.33
SDF4-207ENST00000494748 DHTKD1Q96HY7 919 aaPredicted RBP17.11■□□□□ 0.33
SDF4-207ENST00000494748 TMOD3Q9NYL9 352 aa17.11■□□□□ 0.33
SDF4-207ENST00000494748 SIK3Q9Y2K2 1263 aa17.11■□□□□ 0.33
SDF4-207ENST00000494748 PSMA7O14818 248 aa17.1■□□□□ 0.33
SDF4-207ENST00000494748 CYP19A1P11511 503 aaPredicted RBP17.1■□□□□ 0.33
SDF4-207ENST00000494748 NLRP5P59047 1200 aa17.1■□□□□ 0.33
SDF4-207ENST00000494748 SH2D3CQ8N5H7 860 aa17.1■□□□□ 0.33
SDF4-207ENST00000494748 MYCBPQ99417 103 aaPredicted RBP17.1■□□□□ 0.33
SDF4-207ENST00000494748 TYW1BQ6NUM6 668 aa17.1■□□□□ 0.33
SDF4-207ENST00000494748 IQCKQ8N0W5 287 aa17.1■□□□□ 0.33
SDF4-207ENST00000494748 LRP2BPQ9P2M1 347 aa17.1■□□□□ 0.33
SDF4-207ENST00000494748 DCCP43146 1447 aa17.1■□□□□ 0.33
SDF4-207ENST00000494748 MAGEB6P1A0A0J9YX57 407 aa17.1■□□□□ 0.33
SDF4-207ENST00000494748 OPA1O60313 960 aa17.1■□□□□ 0.33
SDF4-207ENST00000494748 CXCR5P32302 372 aa17.1■□□□□ 0.33
SDF4-207ENST00000494748 DYNLL1P63167 89 aaKnown RBP17.1■□□□□ 0.33
SDF4-207ENST00000494748 P2RX5Q93086 422 aa17.1■□□□□ 0.33
SDF4-207ENST00000494748 TLR10Q9BXR5 811 aa17.1■□□□□ 0.33
SDF4-207ENST00000494748 RBM12Q9NTZ6 932 aaKnown RBP17.1■□□□□ 0.33
SDF4-207ENST00000494748 ZNF233A6NK53 670 aa17.09■□□□□ 0.33
SDF4-207ENST00000494748 NCK2O43639 380 aa17.09■□□□□ 0.33
SDF4-207ENST00000494748 ZEB2O60315 1214 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms