RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 USP17L17D6RBQ6 530 aa14.5□□□□□ -0.09
VPS52-220ENST00000493674 USP17L19D6RCP7 530 aa14.5□□□□□ -0.09
VPS52-220ENST00000493674 USP17L20D6RJB6 530 aa14.5□□□□□ -0.09
VPS52-220ENST00000493674 FIBPO43427 364 aa14.5□□□□□ -0.09
VPS52-220ENST00000493674 FLOT1O75955 427 aa14.5□□□□□ -0.09
VPS52-220ENST00000493674 ICAM1P05362 532 aa14.5□□□□□ -0.09
VPS52-220ENST00000493674 DSG3P32926 999 aa14.5□□□□□ -0.09
VPS52-220ENST00000493674 GHRHRQ02643 423 aa14.5□□□□□ -0.09
VPS52-220ENST00000493674 USP17L24Q0WX57 530 aa14.5□□□□□ -0.09
VPS52-220ENST00000493674 GNL2Q13823 731 aaKnown RBP14.5□□□□□ -0.09
VPS52-220ENST00000493674 PTPAQ15257 358 aa14.5□□□□□ -0.09
VPS52-220ENST00000493674 CSPP1Q1MSJ5 1256 aa14.5□□□□□ -0.09
VPS52-220ENST00000493674 TREML2Q5T2D2 321 aa14.5□□□□□ -0.09
VPS52-220ENST00000493674 ANO1Q5XXA6 986 aa14.5□□□□□ -0.09
VPS52-220ENST00000493674 REXO1Q8N1G1 1221 aaKnown RBP14.5□□□□□ -0.09
VPS52-220ENST00000493674 C2orf69Q8N8R5 385 aa14.5□□□□□ -0.09
VPS52-220ENST00000493674 CUL5Q93034 780 aa14.5□□□□□ -0.09
VPS52-220ENST00000493674 WNK4Q96J92 1243 aa14.5□□□□□ -0.09
VPS52-220ENST00000493674 TFIP11Q9UBB9 837 aaKnown RBP14.5□□□□□ -0.09
VPS52-220ENST00000493674 MCM3APO60318 1980 aa14.49□□□□□ -0.09
VPS52-220ENST00000493674 ABCB11O95342 1321 aa14.49□□□□□ -0.09
VPS52-220ENST00000493674 SPDYE16A6NNV3 312 aaPredicted RBP14.49□□□□□ -0.09
VPS52-220ENST00000493674 PIK3CDO00329 1044 aa14.49□□□□□ -0.09
VPS52-220ENST00000493674 VWA5AO00534 786 aa14.49□□□□□ -0.09
VPS52-220ENST00000493674 ATP2A1O14983 1001 aa14.49□□□□□ -0.09
VPS52-220ENST00000493674 OAZ1P54368 228 aa14.49□□□□□ -0.09
VPS52-220ENST00000493674 LBX2Q6XYB7 198 aa14.49□□□□□ -0.09
VPS52-220ENST00000493674 KRT25Q7Z3Z0 450 aa14.49□□□□□ -0.09
VPS52-220ENST00000493674 LINC00301Q8NCQ3 95 aa14.49□□□□□ -0.09
VPS52-220ENST00000493674 RASGRP4Q8TDF6 673 aa14.49□□□□□ -0.09
VPS52-220ENST00000493674 ATG4CQ96DT6 458 aa14.49□□□□□ -0.09
VPS52-220ENST00000493674 SLC10A4Q96EP9 437 aa14.49□□□□□ -0.09
VPS52-220ENST00000493674 SPATA32Q96LK8 384 aa14.49□□□□□ -0.09
VPS52-220ENST00000493674 ZNF408Q9H9D4 720 aa14.49□□□□□ -0.09
VPS52-220ENST00000493674 PNMA2Q9UL42 364 aa14.49□□□□□ -0.09
VPS52-220ENST00000493674 ABT1Q9ULW3 272 aaKnown RBP14.49□□□□□ -0.09
VPS52-220ENST00000493674 CLIC4Q9Y696 253 aa14.49□□□□□ -0.09
VPS52-220ENST00000493674 WNT7AO00755 349 aa14.48□□□□□ -0.09
VPS52-220ENST00000493674 MEIS2O14770 477 aa14.48□□□□□ -0.09
VPS52-220ENST00000493674 PRPF40AO75400 957 aaKnown RBP14.48□□□□□ -0.09
VPS52-220ENST00000493674 TAL1P17542 331 aaPredicted RBP14.48□□□□□ -0.09
VPS52-220ENST00000493674 NCLP19338 710 aaKnown RBP14.48□□□□□ -0.09
VPS52-220ENST00000493674 MRPL12P52815 198 aaKnown RBP14.48□□□□□ -0.09
VPS52-220ENST00000493674 COG2Q14746 738 aa14.48□□□□□ -0.09
VPS52-220ENST00000493674 SLC39A14Q15043 492 aa14.48□□□□□ -0.09
VPS52-220ENST00000493674 GPAT2Q6NUI2 795 aa14.48□□□□□ -0.09
VPS52-220ENST00000493674 PIK3AP1Q6ZUJ8 805 aa14.48□□□□□ -0.09
VPS52-220ENST00000493674 SAPCD2Q86UD0 394 aa14.48□□□□□ -0.09
VPS52-220ENST00000493674 DNAJC5GQ8N7S2 189 aa14.48□□□□□ -0.09
VPS52-220ENST00000493674 PSTPIP2Q9H939 334 aa14.48□□□□□ -0.09
VPS52-220ENST00000493674 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.48□□□□□ -0.09
VPS52-220ENST00000493674 NOL7Q9UMY1 257 aaKnown RBP14.48□□□□□ -0.09
VPS52-220ENST00000493674 AGTPBP1Q9UPW5 1226 aa14.48□□□□□ -0.09
VPS52-220ENST00000493674 LOXHD1Q8IVV2 1947 aa14.48□□□□□ -0.09
VPS52-220ENST00000493674 DOCK5Q9H7D0 1870 aa14.48□□□□□ -0.09
VPS52-220ENST00000493674 ZNF236Q9UL36 1845 aa14.48□□□□□ -0.09
VPS52-220ENST00000493674 CCDC194A0A1B0GVG4 234 aa14.47□□□□□ -0.09
VPS52-220ENST00000493674 EDIL3O43854 480 aa14.47□□□□□ -0.09
VPS52-220ENST00000493674 GADD45BO75293 160 aaPredicted RBP14.47□□□□□ -0.09
VPS52-220ENST00000493674 ZBTB48P10074 688 aaPredicted RBP14.47□□□□□ -0.09
VPS52-220ENST00000493674 AP3B2Q13367 1082 aa14.47□□□□□ -0.09
VPS52-220ENST00000493674 SNAPC2Q13487 334 aa14.47□□□□□ -0.09
VPS52-220ENST00000493674 SF3A1Q15459 793 aaKnown RBP14.47□□□□□ -0.09
VPS52-220ENST00000493674 USH1GQ495M9 461 aa14.47□□□□□ -0.09
VPS52-220ENST00000493674 MCTP2Q6DN12 878 aa14.47□□□□□ -0.09
VPS52-220ENST00000493674 CCDC174Q6PII3 467 aa14.47□□□□□ -0.09
VPS52-220ENST00000493674 POTEEQ6S8J3 1075 aa14.47□□□□□ -0.09
VPS52-220ENST00000493674 FASTKD5Q7L8L6 764 aaKnown RBP14.47□□□□□ -0.09
VPS52-220ENST00000493674 CRYGNQ8WXF5 182 aa14.47□□□□□ -0.09
VPS52-220ENST00000493674 MS4A4AQ96JQ5 239 aa14.47□□□□□ -0.09
VPS52-220ENST00000493674 PGBD1Q96JS3 809 aa14.47□□□□□ -0.09
VPS52-220ENST00000493674 P2RX7Q99572 595 aaKnown RBP14.47□□□□□ -0.09
VPS52-220ENST00000493674 ZNF214Q9UL59 606 aaPredicted RBP14.47□□□□□ -0.09
VPS52-220ENST00000493674 PCDHB6Q9Y5E3 794 aa14.47□□□□□ -0.09
VPS52-220ENST00000493674 DOCK3Q8IZD9 2030 aa14.47□□□□□ -0.09
VPS52-220ENST00000493674 ZBED4O75132 1171 aa14.46□□□□□ -0.09
VPS52-220ENST00000493674 PPP6R2O75170 966 aa14.46□□□□□ -0.09
VPS52-220ENST00000493674 UBE2HP62256 183 aa14.46□□□□□ -0.09
VPS52-220ENST00000493674 HTRA3P83110 453 aa14.46□□□□□ -0.09
VPS52-220ENST00000493674 NBR1Q14596 966 aa14.46□□□□□ -0.09
VPS52-220ENST00000493674 NONOQ15233 471 aaKnown RBP eCLIP14.46□□□□□ -0.09
VPS52-220ENST00000493674 UBE2SQ16763 222 aa14.46□□□□□ -0.09
VPS52-220ENST00000493674 TTC38Q5R3I4 469 aa14.46□□□□□ -0.09
VPS52-220ENST00000493674 SPRYD7Q5W111 196 aa14.46□□□□□ -0.09
VPS52-220ENST00000493674 GADL1Q6ZQY3 521 aa14.46□□□□□ -0.09
VPS52-220ENST00000493674 GPT2Q8TD30 523 aa14.46□□□□□ -0.09
VPS52-220ENST00000493674 KCNG4Q8TDN1 519 aa14.46□□□□□ -0.09
VPS52-220ENST00000493674 CLEC4DQ8WXI8 215 aa14.46□□□□□ -0.09
VPS52-220ENST00000493674 AGBL1Q96MI9 1066 aa14.46□□□□□ -0.09
VPS52-220ENST00000493674 TMEM260Q9NX78 707 aa14.46□□□□□ -0.09
VPS52-220ENST00000493674 HOXC10Q9NYD6 342 aa14.46□□□□□ -0.09
VPS52-220ENST00000493674 BIN2Q9UBW5 565 aaPredicted RBP14.46□□□□□ -0.09
VPS52-220ENST00000493674 CCPG1Q9ULG6 757 aa14.46□□□□□ -0.09
VPS52-220ENST00000493674 SLC45A1Q9Y2W3 748 aa14.46□□□□□ -0.09
VPS52-220ENST00000493674 MRPL11Q9Y3B7 192 aaKnown RBP14.46□□□□□ -0.09
VPS52-220ENST00000493674 SPTLC2O15270 562 aa14.45□□□□□ -0.1
VPS52-220ENST00000493674 BMP15O95972 392 aa14.45□□□□□ -0.1
VPS52-220ENST00000493674 HSD17B4P51659 736 aa14.45□□□□□ -0.1
VPS52-220ENST00000493674 CEBPZQ03701 1054 aaKnown RBP14.45□□□□□ -0.1
VPS52-220ENST00000493674 ORC2Q13416 577 aaPredicted RBP14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms