RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 ZNF605Q86T29 641 aa5.93□□□□□ -1.46
RFC4-213ENST00000489028 GTF2IRD2Q86UP8 949 aa5.93□□□□□ -1.46
RFC4-213ENST00000489028 ZNF227Q86WZ6 799 aa5.93□□□□□ -1.46
RFC4-213ENST00000489028 TRIM59Q8IWR1 403 aa5.93□□□□□ -1.46
RFC4-213ENST00000489028 FBXO15Q8NCQ5 510 aaPredicted RBP5.93□□□□□ -1.46
RFC4-213ENST00000489028 NUP43Q8NFH3 380 aa5.93□□□□□ -1.46
RFC4-213ENST00000489028 C8orf37Q96NL8 207 aa5.93□□□□□ -1.46
RFC4-213ENST00000489028 MCOLN1Q9GZU1 580 aa5.93□□□□□ -1.46
RFC4-213ENST00000489028 ZNF552Q9H707 407 aaPredicted RBP5.93□□□□□ -1.46
RFC4-213ENST00000489028 BACE2Q9Y5Z0 518 aa5.93□□□□□ -1.46
RFC4-213ENST00000489028 ERVFRD-1P60508 538 aa5.92□□□□□ -1.46
RFC4-213ENST00000489028 DDR2Q16832 855 aa5.92□□□□□ -1.46
RFC4-213ENST00000489028 SLC10A6Q3KNW5 377 aa5.92□□□□□ -1.46
RFC4-213ENST00000489028 EEF1DP3Q658K8 133 aa5.92□□□□□ -1.46
RFC4-213ENST00000489028 CILP2Q8IUL8 1156 aa5.92□□□□□ -1.46
RFC4-213ENST00000489028 KSR1Q8IVT5 923 aa5.92□□□□□ -1.46
RFC4-213ENST00000489028 BTN2A2Q8WVV5 523 aa5.92□□□□□ -1.46
RFC4-213ENST00000489028 PPP1R14AQ96A00 147 aa5.92□□□□□ -1.46
RFC4-213ENST00000489028 TNFRSF12AQ9NP84 129 aa5.92□□□□□ -1.46
RFC4-213ENST00000489028 FBLN5Q9UBX5 448 aa5.92□□□□□ -1.46
RFC4-213ENST00000489028 NAT2P11245 290 aa5.91□□□□□ -1.46
RFC4-213ENST00000489028 CYP4F8P98187 520 aa5.91□□□□□ -1.46
RFC4-213ENST00000489028 SCRN1Q12765 414 aa5.91□□□□□ -1.46
RFC4-213ENST00000489028 SV2CQ496J9 727 aa5.91□□□□□ -1.46
RFC4-213ENST00000489028 MBLAC2Q68D91 279 aa5.91□□□□□ -1.46
RFC4-213ENST00000489028 CPNE8Q86YQ8 564 aa5.91□□□□□ -1.46
RFC4-213ENST00000489028 COPS5Q92905 334 aa5.91□□□□□ -1.46
RFC4-213ENST00000489028 GPRC5CQ9NQ84 441 aa5.91□□□□□ -1.46
RFC4-213ENST00000489028 OR14I1A6ND48 311 aa5.9□□□□□ -1.46
RFC4-213ENST00000489028 ETV2O00321 342 aaPredicted RBP5.9□□□□□ -1.46
RFC4-213ENST00000489028 NOP56O00567 594 aaKnown RBP5.9□□□□□ -1.46
RFC4-213ENST00000489028 PPP1R11O60927 126 aaPredicted RBP5.9□□□□□ -1.46
RFC4-213ENST00000489028 CAPNS1P04632 268 aa5.9□□□□□ -1.46
RFC4-213ENST00000489028 C1QTNF9P0C862 333 aa5.9□□□□□ -1.46
RFC4-213ENST00000489028 SEPHS1P49903 392 aa5.9□□□□□ -1.46
RFC4-213ENST00000489028 LAPTM5Q13571 262 aa5.9□□□□□ -1.46
RFC4-213ENST00000489028 RAB33AQ14088 237 aa5.9□□□□□ -1.46
RFC4-213ENST00000489028 SF1Q15637 639 aaKnown RBP5.9□□□□□ -1.46
RFC4-213ENST00000489028 LCE3BQ5TA77 95 aa5.9□□□□□ -1.46
RFC4-213ENST00000489028 POMZP3Q6PJE2 187 aa5.9□□□□□ -1.46
RFC4-213ENST00000489028 JAMLQ86YT9 394 aa5.9□□□□□ -1.46
RFC4-213ENST00000489028 SLC38A3Q99624 504 aa5.9□□□□□ -1.46
RFC4-213ENST00000489028 SGPP1Q9BX95 441 aa5.9□□□□□ -1.46
RFC4-213ENST00000489028 TANGO6Q9C0B7 1094 aa5.9□□□□□ -1.46
RFC4-213ENST00000489028 NKX2-4Q9H2Z4 354 aa5.9□□□□□ -1.46
RFC4-213ENST00000489028 CLEC1BQ9P126 229 aa5.9□□□□□ -1.46
RFC4-213ENST00000489028 KLHL14Q9P2G3 628 aa5.9□□□□□ -1.46
RFC4-213ENST00000489028 ARNTLO00327 626 aa5.89□□□□□ -1.47
RFC4-213ENST00000489028 PEX10O60683 326 aa5.89□□□□□ -1.47
RFC4-213ENST00000489028 STK10O94804 968 aaKnown RBP5.89□□□□□ -1.47
RFC4-213ENST00000489028 TBC1D8O95759 1140 aa5.89□□□□□ -1.47
RFC4-213ENST00000489028 TSPAN15O95858 294 aa5.89□□□□□ -1.47
RFC4-213ENST00000489028 THBDP07204 575 aa5.89□□□□□ -1.47
RFC4-213ENST00000489028 PLS3P13797 630 aa5.89□□□□□ -1.47
RFC4-213ENST00000489028 TACR1P25103 407 aa5.89□□□□□ -1.47
RFC4-213ENST00000489028 L1CAMP32004 1257 aa5.89□□□□□ -1.47
RFC4-213ENST00000489028 VIPR1P32241 457 aa5.89□□□□□ -1.47
RFC4-213ENST00000489028 YBX1P67809 324 aaKnown RBP5.89□□□□□ -1.47
RFC4-213ENST00000489028 KRTAP1-3Q8IUG1 177 aa5.89□□□□□ -1.47
RFC4-213ENST00000489028 CRACR2BQ8N4Y2 399 aaPredicted RBP5.89□□□□□ -1.47
RFC4-213ENST00000489028 FRS2Q8WU20 508 aa5.89□□□□□ -1.47
RFC4-213ENST00000489028 SLC26A8Q96RN1 970 aa5.89□□□□□ -1.47
RFC4-213ENST00000489028 GCM1Q9NP62 436 aa5.89□□□□□ -1.47
RFC4-213ENST00000489028 R3HCC1Q9Y3T6 440 aaKnown RBP5.89□□□□□ -1.47
RFC4-213ENST00000489028 NUDT19A8MXV4 375 aa5.88□□□□□ -1.47
RFC4-213ENST00000489028 MED14OSP0DP75 135 aa5.88□□□□□ -1.47
RFC4-213ENST00000489028 PAMP19021 973 aa5.88□□□□□ -1.47
RFC4-213ENST00000489028 GRIA2P42262 883 aa5.88□□□□□ -1.47
RFC4-213ENST00000489028 PRSS53Q2L4Q9 553 aa5.88□□□□□ -1.47
RFC4-213ENST00000489028 EEPD1Q7L9B9 569 aa5.88□□□□□ -1.47
RFC4-213ENST00000489028 KREMEN2Q8NCW0 462 aa5.88□□□□□ -1.47
RFC4-213ENST00000489028 BHLHE22Q8NFJ8 381 aaPredicted RBP5.88□□□□□ -1.47
RFC4-213ENST00000489028 NPLOC4Q8TAT6 608 aa5.88□□□□□ -1.47
RFC4-213ENST00000489028 PDLIM7Q9NR12 457 aa5.88□□□□□ -1.47
RFC4-213ENST00000489028 CYP26B1Q9NR63 512 aa5.88□□□□□ -1.47
RFC4-213ENST00000489028 LRP2BPQ9P2M1 347 aa5.88□□□□□ -1.47
RFC4-213ENST00000489028 TMEFF2Q9UIK5 374 aaPredicted RBP5.88□□□□□ -1.47
RFC4-213ENST00000489028 HCFC2Q9Y5Z7 792 aa5.88□□□□□ -1.47
RFC4-213ENST00000489028 NPHP3-ACAD11A0A0J9YXS1 232 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 TEX51A0A1B0GUA7 166 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 A0A1W2PQU0 124 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 C7orf72A4D263 438 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 MPOP05164 745 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 DBHP09172 617 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 YBX3P16989 372 aaKnown RBP eCLIP5.87□□□□□ -1.478e-7■■□□□ 12.3
RFC4-213ENST00000489028 ATP2B1P20020 1258 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 ARL4AP40617 200 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 CORO7P57737 925 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 JAG1P78504 1218 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 SRSF3P84103 164 aaKnown RBP5.87□□□□□ -1.47
RFC4-213ENST00000489028 RAB3GAP1Q15042 981 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 INF2Q27J81 1249 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 DENND5AQ6IQ26 1287 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 RPTNQ6XPR3 784 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 ATG14Q6ZNE5 492 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 CCDC103Q8IW40 242 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 NLGN2Q8NFZ4 835 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 PPP1R16BQ96T49 567 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 MTA3Q9BTC8 594 aa5.87□□□□□ -1.47
RFC4-213ENST00000489028 CD320Q9NPF0 282 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms