RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 ADD1P35611 737 aaKnown RBP12.81□□□□□ -0.36
UBE4B-210ENST00000488228 FUT2Q10981 343 aa12.81□□□□□ -0.36
UBE4B-210ENST00000488228 KCTD2Q14681 263 aa12.81□□□□□ -0.36
UBE4B-210ENST00000488228 RABEP1Q15276 862 aa12.81□□□□□ -0.36
UBE4B-210ENST00000488228 FBXO11Q86XK2 927 aa12.81□□□□□ -0.36
UBE4B-210ENST00000488228 CHST13Q8NET6 341 aa12.81□□□□□ -0.36
UBE4B-210ENST00000488228 RAET1EQ8TD07 263 aa12.81□□□□□ -0.36
UBE4B-210ENST00000488228 RRP36Q96EU6 259 aaKnown RBP12.81□□□□□ -0.36
UBE4B-210ENST00000488228 APBA2Q99767 749 aa12.81□□□□□ -0.36
UBE4B-210ENST00000488228 NUDT12Q9BQG2 462 aa12.81□□□□□ -0.36
UBE4B-210ENST00000488228 LZTS2Q9BRK4 669 aa12.81□□□□□ -0.36
UBE4B-210ENST00000488228 ALDH8A1Q9H2A2 487 aaPredicted RBP12.81□□□□□ -0.36
UBE4B-210ENST00000488228 A1CFQ9NQ94 594 aaKnown RBP12.81□□□□□ -0.36
UBE4B-210ENST00000488228 DTNBO60941 627 aa12.8□□□□□ -0.36
UBE4B-210ENST00000488228 COBLO75128 1261 aa12.8□□□□□ -0.36
UBE4B-210ENST00000488228 HOXD10P28358 340 aa12.8□□□□□ -0.36
UBE4B-210ENST00000488228 RGS2P41220 211 aa12.8□□□□□ -0.36
UBE4B-210ENST00000488228 MAP2K5Q13163 448 aa12.8□□□□□ -0.36
UBE4B-210ENST00000488228 ANKRD1Q15327 319 aa12.8□□□□□ -0.36
UBE4B-210ENST00000488228 CCL14Q16627 93 aa12.8□□□□□ -0.36
UBE4B-210ENST00000488228 TKFCQ3LXA3 575 aa12.8□□□□□ -0.36
UBE4B-210ENST00000488228 FBXO46Q6PJ61 603 aaPredicted RBP12.8□□□□□ -0.36
UBE4B-210ENST00000488228 NSMFQ6X4W1 530 aa12.8□□□□□ -0.36
UBE4B-210ENST00000488228 SLC30A10Q6XR72 485 aa12.8□□□□□ -0.36
UBE4B-210ENST00000488228 CLEC4DQ8WXI8 215 aa12.8□□□□□ -0.36
UBE4B-210ENST00000488228 USP6NLQ92738 828 aa12.8□□□□□ -0.36
UBE4B-210ENST00000488228 GPKOWQ92917 476 aaPredicted RBP eCLIP12.8□□□□□ -0.36
UBE4B-210ENST00000488228 PHKBQ93100 1093 aa12.8□□□□□ -0.36
UBE4B-210ENST00000488228 ZNF274Q96GC6 653 aaPredicted RBP12.8□□□□□ -0.36
UBE4B-210ENST00000488228 AMNQ9BXJ7 453 aa12.8□□□□□ -0.36
UBE4B-210ENST00000488228 SEC63Q9UGP8 760 aaKnown RBP12.8□□□□□ -0.36
UBE4B-210ENST00000488228 FBXO40Q9UH90 709 aa12.8□□□□□ -0.36
UBE4B-210ENST00000488228 ABCB11O95342 1321 aa12.8□□□□□ -0.36
UBE4B-210ENST00000488228 KIAA1217Q5T5P2 1943 aa12.8□□□□□ -0.36
UBE4B-210ENST00000488228 PNMA6FA0A0J9YX94 578 aa12.79□□□□□ -0.36
UBE4B-210ENST00000488228 ADCY3O60266 1144 aa12.79□□□□□ -0.36
UBE4B-210ENST00000488228 CD2BP2O95400 341 aaKnown RBP12.79□□□□□ -0.36
UBE4B-210ENST00000488228 SMARCA1P28370 1054 aa12.79□□□□□ -0.36
UBE4B-210ENST00000488228 PRMT2P55345 433 aa12.79□□□□□ -0.36
UBE4B-210ENST00000488228 ST3GAL1Q11201 340 aa12.79□□□□□ -0.36
UBE4B-210ENST00000488228 SCRN1Q12765 414 aa12.79□□□□□ -0.36
UBE4B-210ENST00000488228 NTRK3Q16288 839 aa12.79□□□□□ -0.36
UBE4B-210ENST00000488228 ME3Q16798 604 aa12.79□□□□□ -0.36
UBE4B-210ENST00000488228 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.79□□□□□ -0.36
UBE4B-210ENST00000488228 HEATR3Q7Z4Q2 680 aa12.79□□□□□ -0.36
UBE4B-210ENST00000488228 ANKRD35Q8N283 1001 aa12.79□□□□□ -0.36
UBE4B-210ENST00000488228 NECAB1Q8N987 351 aa12.79□□□□□ -0.36
UBE4B-210ENST00000488228 NPLOC4Q8TAT6 608 aa12.79□□□□□ -0.36
UBE4B-210ENST00000488228 SH3TC2Q8TF17 1288 aa12.79□□□□□ -0.36
UBE4B-210ENST00000488228 TRIB2Q92519 343 aa12.79□□□□□ -0.36
UBE4B-210ENST00000488228 SLKQ9H2G2 1235 aaPredicted RBP12.79□□□□□ -0.36
UBE4B-210ENST00000488228 CCDC196A0A1B0GTZ2 297 aa12.78□□□□□ -0.36
UBE4B-210ENST00000488228 PTPDC1A2A3K4 754 aa12.78□□□□□ -0.36
UBE4B-210ENST00000488228 OPLAHO14841 1288 aa12.78□□□□□ -0.36
UBE4B-210ENST00000488228 STRNO43815 780 aa12.78□□□□□ -0.36
UBE4B-210ENST00000488228 PFKFB2O60825 505 aa12.78□□□□□ -0.36
UBE4B-210ENST00000488228 IRF5Q13568 498 aa12.78□□□□□ -0.36
UBE4B-210ENST00000488228 SLC9C1Q4G0N8 1177 aa12.78□□□□□ -0.36
UBE4B-210ENST00000488228 WWC2Q6AWC2 1192 aa12.78□□□□□ -0.36
UBE4B-210ENST00000488228 DPP9Q86TI2 863 aa12.78□□□□□ -0.36
UBE4B-210ENST00000488228 ABRAQ8N0Z2 381 aa12.78□□□□□ -0.36
UBE4B-210ENST00000488228 GTF3C6Q969F1 213 aa12.78□□□□□ -0.36
UBE4B-210ENST00000488228 PURBQ96QR8 312 aaKnown RBP12.78□□□□□ -0.36
UBE4B-210ENST00000488228 SLC26A6Q9BXS9 759 aa12.78□□□□□ -0.36
UBE4B-210ENST00000488228 CYP39A1Q9NYL5 469 aa12.78□□□□□ -0.36
UBE4B-210ENST00000488228 FLRT1Q9NZU1 646 aa12.78□□□□□ -0.36
UBE4B-210ENST00000488228 PNMA2Q9UL42 364 aa12.78□□□□□ -0.36
UBE4B-210ENST00000488228 PCDHA1Q9Y5I3 950 aa12.78□□□□□ -0.36
UBE4B-210ENST00000488228 PFASO15067 1338 aa12.78□□□□□ -0.36
UBE4B-210ENST00000488228 KIAA0100Q14667 2235 aaKnown RBP12.78□□□□□ -0.36
UBE4B-210ENST00000488228 DNAJC25-GNG10A0A024R161 153 aa12.77□□□□□ -0.37
UBE4B-210ENST00000488228 CPLX1O14810 134 aa12.77□□□□□ -0.37
UBE4B-210ENST00000488228 MYCP01106 439 aaPredicted RBP12.77□□□□□ -0.37
UBE4B-210ENST00000488228 HOXC6P09630 235 aa12.77□□□□□ -0.37
UBE4B-210ENST00000488228 CALML3P27482 149 aa12.77□□□□□ -0.37
UBE4B-210ENST00000488228 CNTN2Q02246 1040 aa12.77□□□□□ -0.37
UBE4B-210ENST00000488228 TRIM32Q13049 653 aa12.77□□□□□ -0.37
UBE4B-210ENST00000488228 PPP2R5BQ15173 497 aa12.77□□□□□ -0.37
UBE4B-210ENST00000488228 PKN2Q16513 984 aaKnown RBP12.77□□□□□ -0.37
UBE4B-210ENST00000488228 SLAIN1Q8ND83 568 aa12.77□□□□□ -0.37
UBE4B-210ENST00000488228 DDX11Q96FC9 970 aa12.77□□□□□ -0.37
UBE4B-210ENST00000488228 FGD4Q96M96 766 aa12.77□□□□□ -0.37
UBE4B-210ENST00000488228 MRPL11Q9Y3B7 192 aaKnown RBP12.77□□□□□ -0.37
UBE4B-210ENST00000488228 DDX49Q9Y6V7 483 aaKnown RBP12.77□□□□□ -0.37
UBE4B-210ENST00000488228 V9GY48 417 aaPredicted RBP12.77□□□□□ -0.37
UBE4B-210ENST00000488228 MYH7BA7E2Y1 1941 aa12.77□□□□□ -0.37
UBE4B-210ENST00000488228 ASTN1O14525 1302 aa12.77□□□□□ -0.37
UBE4B-210ENST00000488228 DOCK5Q9H7D0 1870 aa12.76□□□□□ -0.37
UBE4B-210ENST00000488228 POTEB2H3BUK9 544 aa12.76□□□□□ -0.37
UBE4B-210ENST00000488228 ST18O60284 1047 aa12.76□□□□□ -0.37
UBE4B-210ENST00000488228 HMGCRP04035 888 aa12.76□□□□□ -0.37
UBE4B-210ENST00000488228 INHAP05111 366 aa12.76□□□□□ -0.37
UBE4B-210ENST00000488228 XRCC5P13010 732 aaKnown RBP12.76□□□□□ -0.37
UBE4B-210ENST00000488228 IFNAR1P17181 557 aa12.76□□□□□ -0.37
UBE4B-210ENST00000488228 GRK4P32298 578 aa12.76□□□□□ -0.37
UBE4B-210ENST00000488228 RPS6P62753 249 aaKnown RBP12.76□□□□□ -0.37
UBE4B-210ENST00000488228 BAATQ14032 418 aaPredicted RBP12.76□□□□□ -0.37
UBE4B-210ENST00000488228 ZNF792Q3KQV3 632 aa12.76□□□□□ -0.37
UBE4B-210ENST00000488228 TYW1BQ6NUM6 668 aa12.76□□□□□ -0.37
UBE4B-210ENST00000488228 RNF207Q6ZRF8 634 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms