RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 GPATCH4Q5T3I0 446 aaKnown RBP8.24□□□□□ -1.09
VPS50-218ENST00000485994 SNRNP48Q6IEG0 339 aaKnown RBP8.24□□□□□ -1.09
VPS50-218ENST00000485994 IQCA1Q86XH1 822 aa8.24□□□□□ -1.09
VPS50-218ENST00000485994 LRRC47Q8N1G4 583 aaKnown RBP8.24□□□□□ -1.09
VPS50-218ENST00000485994 ARRDC4Q8NCT1 418 aa8.24□□□□□ -1.09
VPS50-218ENST00000485994 MAP4K1Q92918 833 aa8.24□□□□□ -1.09
VPS50-218ENST00000485994 DDX11Q96FC9 970 aa8.24□□□□□ -1.09
VPS50-218ENST00000485994 C11orf49Q9H6J7 331 aa8.24□□□□□ -1.09
VPS50-218ENST00000485994 RAVER2Q9HCJ3 691 aaKnown RBP8.24□□□□□ -1.09
VPS50-218ENST00000485994 ZSWIM5Q9P217 1185 aa8.24□□□□□ -1.09
VPS50-218ENST00000485994 PRR12Q9ULL5 1215 aa8.24□□□□□ -1.09
VPS50-218ENST00000485994 TRIOBPQ9H2D6 2365 aa8.24□□□□□ -1.09
VPS50-218ENST00000485994 ZNF865P0CJ78 1059 aaPredicted RBP8.23□□□□□ -1.09
VPS50-218ENST00000485994 PDHBP11177 359 aa8.23□□□□□ -1.09
VPS50-218ENST00000485994 NKX3-2P78367 333 aa8.23□□□□□ -1.09
VPS50-218ENST00000485994 IRX6P78412 446 aaPredicted RBP8.23□□□□□ -1.09
VPS50-218ENST00000485994 C1orf53Q5VUE5 145 aa8.23□□□□□ -1.09
VPS50-218ENST00000485994 KCTD1Q719H9 257 aa8.23□□□□□ -1.09
VPS50-218ENST00000485994 CENPQQ7L2Z9 268 aaPredicted RBP8.23□□□□□ -1.09
VPS50-218ENST00000485994 TBC1D10CQ8IV04 446 aa8.23□□□□□ -1.09
VPS50-218ENST00000485994 CPXCR1Q8N123 301 aa8.23□□□□□ -1.09
VPS50-218ENST00000485994 RGS22Q8NE09 1264 aa8.23□□□□□ -1.09
VPS50-218ENST00000485994 TRERF1Q96PN7 1200 aa8.23□□□□□ -1.09
VPS50-218ENST00000485994 MTA3Q9BTC8 594 aa8.23□□□□□ -1.09
VPS50-218ENST00000485994 IL25Q9H293 177 aa8.23□□□□□ -1.09
VPS50-218ENST00000485994 RANBP17Q9H2T7 1088 aaKnown RBP8.23□□□□□ -1.09
VPS50-218ENST00000485994 PRO3102Q9H379 93 aa8.23□□□□□ -1.09
VPS50-218ENST00000485994 ACAD9Q9H845 621 aa8.23□□□□□ -1.09
VPS50-218ENST00000485994 TOMM22Q9NS69 142 aa8.23□□□□□ -1.09
VPS50-218ENST00000485994 ALPK3Q96L96 1907 aa8.23□□□□□ -1.09
VPS50-218ENST00000485994 LAMA4Q16363 1823 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 DNAH12Q6ZR08 3092 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 A0A1W2PPC1 479 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 H0YGN5 161 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 DNM1LO00429 736 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 EVI5O60447 810 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 KDM4AO75164 1064 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 SLC34A2O95436 690 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 SNAI1O95863 264 aaPredicted RBP8.22□□□□□ -1.09
VPS50-218ENST00000485994 ICAM1P05362 532 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 PGK2P07205 417 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 BMP8BP34820 402 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 ZNF543Q08ER8 600 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 RRP12Q5JTH9 1297 aaKnown RBP8.22□□□□□ -1.09
VPS50-218ENST00000485994 SYDE2Q5VT97 1194 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 ANKRD35Q8N283 1001 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 FAM133AQ8N9E0 248 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 MORC4Q8TE76 937 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 DIS3LQ8TF46 1054 aaKnown RBP8.22□□□□□ -1.09
VPS50-218ENST00000485994 AGBL1Q96MI9 1066 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 ZSCAN10Q96SZ4 725 aaPredicted RBP8.22□□□□□ -1.09
VPS50-218ENST00000485994 TSEN34Q9BSV6 310 aaKnown RBP8.22□□□□□ -1.09
VPS50-218ENST00000485994 ABHD16BQ9H3Z7 469 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 MCM3APO60318 1980 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 PFASO15067 1338 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 WDR19Q8NEZ3 1342 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 FRMPD3Q5JV73 1810 aa8.22□□□□□ -1.09
VPS50-218ENST00000485994 ASB14A6NK59 587 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 PPP1R37O75864 691 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 CYP21A2P08686 494 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 AKR1A1P14550 325 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 CNGA1P29973 690 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 PTH1RQ03431 593 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 TRDNQ13061 729 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 IKQ13123 557 aaPredicted RBP8.21□□□□□ -1.1
VPS50-218ENST00000485994 SEC23AQ15436 765 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 BMP2KLQ5H9B9 411 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 HABP4Q5JVS0 413 aaKnown RBP8.21□□□□□ -1.1
VPS50-218ENST00000485994 PRAMEF19Q5SWL8 479 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 TTBK2Q6IQ55 1244 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 SAMD3Q8N6K7 520 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 ENAHQ8N8S7 591 aaPredicted RBP8.21□□□□□ -1.1
VPS50-218ENST00000485994 PNMA1Q8ND90 353 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 FGD4Q96M96 766 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 A1CFQ9NQ94 594 aaKnown RBP8.21□□□□□ -1.1
VPS50-218ENST00000485994 CYP39A1Q9NYL5 469 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 FAM184BQ9ULE4 1060 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 CNPY2Q9Y2B0 182 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 Q9Y3F1 56 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 NEDD4P46934 1319 aa8.21□□□□□ -1.1
VPS50-218ENST00000485994 BAZ2BQ9UIF8 2168 aaKnown RBP8.2□□□□□ -1.1
VPS50-218ENST00000485994 B4E1Z4 1266 aa8.2□□□□□ -1.1
VPS50-218ENST00000485994 DUSP11O75319 330 aaKnown RBP8.2□□□□□ -1.1
VPS50-218ENST00000485994 RARBP10826 455 aa8.2□□□□□ -1.1
VPS50-218ENST00000485994 CST5P28325 142 aaPredicted RBP8.2□□□□□ -1.1
VPS50-218ENST00000485994 PTPN5P54829 565 aa8.2□□□□□ -1.1
VPS50-218ENST00000485994 ACVR2BQ13705 512 aa8.2□□□□□ -1.1
VPS50-218ENST00000485994 SNX17Q15036 470 aa8.2□□□□□ -1.1
VPS50-218ENST00000485994 LRRC41Q15345 812 aa8.2□□□□□ -1.1
VPS50-218ENST00000485994 ASPRV1Q53RT3 343 aa8.2□□□□□ -1.1
VPS50-218ENST00000485994 IQSEC1Q6DN90 963 aa8.2□□□□□ -1.1
VPS50-218ENST00000485994 SLC39A5Q6ZMH5 540 aa8.2□□□□□ -1.1
VPS50-218ENST00000485994 TMTC2Q8N394 836 aa8.2□□□□□ -1.1
VPS50-218ENST00000485994 KLHDC9Q8NEP7 349 aa8.2□□□□□ -1.1
VPS50-218ENST00000485994 MAP3K14Q99558 947 aa8.2□□□□□ -1.1
VPS50-218ENST00000485994 SENP6Q9GZR1 1112 aaPredicted RBP8.2□□□□□ -1.1
VPS50-218ENST00000485994 KATNBL1Q9H079 304 aa8.2□□□□□ -1.1
VPS50-218ENST00000485994 KAT14Q9H8E8 782 aa8.2□□□□□ -1.1
VPS50-218ENST00000485994 RNF146Q9NTX7 359 aa8.2□□□□□ -1.1
VPS50-218ENST00000485994 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms