RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 CNTN2Q02246 1040 aa19.41■□□□□ 0.7
TRIM54-203ENST00000485306 TRDNQ13061 729 aa19.41■□□□□ 0.7
TRIM54-203ENST00000485306 ARMCX2Q7L311 632 aa19.41■□□□□ 0.7
TRIM54-203ENST00000485306 CCDC144CPQ8IYA2 1237 aa19.41■□□□□ 0.7
TRIM54-203ENST00000485306 PNMA1Q8ND90 353 aa19.41■□□□□ 0.7
TRIM54-203ENST00000485306 ANKS1AQ92625 1134 aa19.41■□□□□ 0.7
TRIM54-203ENST00000485306 MAP4K1Q92918 833 aa19.41■□□□□ 0.7
TRIM54-203ENST00000485306 UBAC1Q9BSL1 405 aa19.41■□□□□ 0.7
TRIM54-203ENST00000485306 MUM1L1Q5H9M0 696 aa19.4■□□□□ 0.7
TRIM54-203ENST00000485306 NSMFQ6X4W1 530 aa19.4■□□□□ 0.7
TRIM54-203ENST00000485306 FERMT2Q96AC1 680 aa19.4■□□□□ 0.7
TRIM54-203ENST00000485306 GDF15Q99988 308 aa19.4■□□□□ 0.7
TRIM54-203ENST00000485306 UPF2Q9HAU5 1272 aaKnown RBP19.4■□□□□ 0.7
TRIM54-203ENST00000485306 SPC25Q9HBM1 224 aa19.4■□□□□ 0.7
TRIM54-203ENST00000485306 CYP39A1Q9NYL5 469 aa19.4■□□□□ 0.7
TRIM54-203ENST00000485306 PHF24Q9UPV7 400 aa19.4■□□□□ 0.7
TRIM54-203ENST00000485306 DUSP11O75319 330 aaKnown RBP19.39■□□□□ 0.69
TRIM54-203ENST00000485306 RTP1P59025 263 aa19.39■□□□□ 0.69
TRIM54-203ENST00000485306 FGD4Q96M96 766 aa19.39■□□□□ 0.69
TRIM54-203ENST00000485306 TSEN34Q9BSV6 310 aaKnown RBP19.39■□□□□ 0.69
TRIM54-203ENST00000485306 ATP11BQ9Y2G3 1177 aa19.39■□□□□ 0.69
TRIM54-203ENST00000485306 MCM3APO60318 1980 aa19.39■□□□□ 0.69
TRIM54-203ENST00000485306 SOWAHBA6NEL2 793 aa19.38■□□□□ 0.69
TRIM54-203ENST00000485306 TNKSO95271 1327 aa19.38■□□□□ 0.69
TRIM54-203ENST00000485306 MAGEA10P43363 369 aaPredicted RBP19.38■□□□□ 0.69
TRIM54-203ENST00000485306 CCDC144BQ3MJ40 725 aa19.38■□□□□ 0.69
TRIM54-203ENST00000485306 C1orf53Q5VUE5 145 aa19.38■□□□□ 0.69
TRIM54-203ENST00000485306 ENAHQ8N8S7 591 aaPredicted RBP19.38■□□□□ 0.69
TRIM54-203ENST00000485306 LBHD1Q9BQE6 289 aaPredicted RBP19.38■□□□□ 0.69
TRIM54-203ENST00000485306 USP26Q9BXU7 913 aa19.38■□□□□ 0.69
TRIM54-203ENST00000485306 ADD3Q9UEY8 706 aaKnown RBP19.38■□□□□ 0.69
TRIM54-203ENST00000485306 RBM8AQ9Y5S9 174 aaKnown RBP19.38■□□□□ 0.69
TRIM54-203ENST00000485306 TAF6LQ9Y6J9 622 aa19.38■□□□□ 0.69
TRIM54-203ENST00000485306 ADAMTS4O75173 837 aa19.37■□□□□ 0.69
TRIM54-203ENST00000485306 GOLGA8HP0CJ92 632 aa19.37■□□□□ 0.69
TRIM54-203ENST00000485306 ASPRV1Q53RT3 343 aa19.37■□□□□ 0.69
TRIM54-203ENST00000485306 IFIT1BQ5T764 474 aaKnown RBP19.37■□□□□ 0.69
TRIM54-203ENST00000485306 CYB5R4Q7L1T6 521 aa19.37■□□□□ 0.69
TRIM54-203ENST00000485306 NUP133Q8WUM0 1156 aa19.37■□□□□ 0.69
TRIM54-203ENST00000485306 UBE2OQ9C0C9 1292 aaKnown RBP19.37■□□□□ 0.69
TRIM54-203ENST00000485306 WDR19Q8NEZ3 1342 aa19.36■□□□□ 0.69
TRIM54-203ENST00000485306 SYNRGQ9UMZ2 1314 aa19.36■□□□□ 0.69
TRIM54-203ENST00000485306 PTPDC1A2A3K4 754 aa19.36■□□□□ 0.69
TRIM54-203ENST00000485306 MOXD2PA6NHM9 499 aa19.36■□□□□ 0.69
TRIM54-203ENST00000485306 E7EWF7 191 aa19.36■□□□□ 0.69
TRIM54-203ENST00000485306 PARP1P09874 1014 aaKnown RBP19.36■□□□□ 0.69
TRIM54-203ENST00000485306 BAATQ14032 418 aaPredicted RBP19.36■□□□□ 0.69
TRIM54-203ENST00000485306 SNX17Q15036 470 aa19.36■□□□□ 0.69
TRIM54-203ENST00000485306 RNF20Q5VTR2 975 aa19.36■□□□□ 0.69
TRIM54-203ENST00000485306 STOX1Q6ZVD7 989 aa19.36■□□□□ 0.69
TRIM54-203ENST00000485306 NOL8Q76FK4 1167 aaKnown RBP19.36■□□□□ 0.69
TRIM54-203ENST00000485306 PCSK9Q8NBP7 692 aaKnown RBP19.36■□□□□ 0.69
TRIM54-203ENST00000485306 LENG1Q96BZ8 264 aaPredicted RBP19.36■□□□□ 0.69
TRIM54-203ENST00000485306 UBA5Q9GZZ9 404 aa19.36■□□□□ 0.69
TRIM54-203ENST00000485306 LOC102724159A0A0B4J2E5 919 aa19.35■□□□□ 0.69
TRIM54-203ENST00000485306 ERICH2A1L162 156 aa19.35■□□□□ 0.69
TRIM54-203ENST00000485306 C6orf222P0C671 652 aaPredicted RBP19.35■□□□□ 0.69
TRIM54-203ENST00000485306 ACLYP53396 1101 aa19.35■□□□□ 0.69
TRIM54-203ENST00000485306 TNFAIP2Q03169 654 aa19.35■□□□□ 0.69
TRIM54-203ENST00000485306 PWP2Q15269 919 aaKnown RBP19.35■□□□□ 0.69
TRIM54-203ENST00000485306 KCNA10Q16322 511 aa19.35■□□□□ 0.69
TRIM54-203ENST00000485306 TRIM60Q495X7 471 aa19.35■□□□□ 0.69
TRIM54-203ENST00000485306 RNF207Q6ZRF8 634 aa19.35■□□□□ 0.69
TRIM54-203ENST00000485306 RALYLQ86SE5 291 aaKnown RBP19.35■□□□□ 0.69
TRIM54-203ENST00000485306 KLHDC9Q8NEP7 349 aa19.35■□□□□ 0.69
TRIM54-203ENST00000485306 NCOA7Q8NI08 942 aa19.35■□□□□ 0.69
TRIM54-203ENST00000485306 MPHOSPH6Q99547 160 aaKnown RBP19.35■□□□□ 0.69
TRIM54-203ENST00000485306 A0A1W2PQ45 241 aaPredicted RBP19.34■□□□□ 0.69
TRIM54-203ENST00000485306 A0A1W2PQY0 241 aa19.34■□□□□ 0.69
TRIM54-203ENST00000485306 NFIBO00712 420 aa19.34■□□□□ 0.69
TRIM54-203ENST00000485306 DHX16O60231 1041 aaKnown RBP19.34■□□□□ 0.69
TRIM54-203ENST00000485306 SEC24BO95487 1268 aa19.34■□□□□ 0.69
TRIM54-203ENST00000485306 CST5P28325 142 aaPredicted RBP19.34■□□□□ 0.69
TRIM54-203ENST00000485306 GJA9P57773 515 aa19.34■□□□□ 0.69
TRIM54-203ENST00000485306 MDM2Q00987 491 aaPredicted RBP19.34■□□□□ 0.69
TRIM54-203ENST00000485306 NECTIN1Q15223 517 aa19.34■□□□□ 0.69
TRIM54-203ENST00000485306 SEC23AQ15436 765 aa19.34■□□□□ 0.69
TRIM54-203ENST00000485306 IQSEC1Q6DN90 963 aa19.34■□□□□ 0.69
TRIM54-203ENST00000485306 KATNBL1Q9H079 304 aa19.34■□□□□ 0.69
TRIM54-203ENST00000485306 PCDH10Q9P2E7 1040 aa19.34■□□□□ 0.69
TRIM54-203ENST00000485306 B4DLN1 442 aa19.33■□□□□ 0.68
TRIM54-203ENST00000485306 CALML3P27482 149 aa19.33■□□□□ 0.68
TRIM54-203ENST00000485306 HSPA4P34932 840 aa19.33■□□□□ 0.68
TRIM54-203ENST00000485306 MRPL12P52815 198 aaKnown RBP19.33■□□□□ 0.68
TRIM54-203ENST00000485306 SART3Q15020 963 aaKnown RBP19.33■□□□□ 0.68
TRIM54-203ENST00000485306 GNASQ5JWF2 1037 aa19.33■□□□□ 0.68
TRIM54-203ENST00000485306 ADGRF4Q8IZF3 695 aa19.33■□□□□ 0.68
TRIM54-203ENST00000485306 TDHQ8IZJ6 230 aa19.33■□□□□ 0.68
TRIM54-203ENST00000485306 CLEC4DQ8WXI8 215 aa19.33■□□□□ 0.68
TRIM54-203ENST00000485306 KCNB2Q92953 911 aa19.33■□□□□ 0.68
TRIM54-203ENST00000485306 VTI1AQ96AJ9 217 aa19.33■□□□□ 0.68
TRIM54-203ENST00000485306 GLT1D1Q96MS3 346 aa19.33■□□□□ 0.68
TRIM54-203ENST00000485306 MAF1Q9H063 256 aa19.33■□□□□ 0.68
TRIM54-203ENST00000485306 AP5M1Q9H0R1 490 aa19.33■□□□□ 0.68
TRIM54-203ENST00000485306 UPF3AQ9H1J1 476 aaKnown RBP19.33■□□□□ 0.68
TRIM54-203ENST00000485306 VTA1Q9NP79 307 aa19.33■□□□□ 0.68
TRIM54-203ENST00000485306 PRDM5Q9NQX1 630 aaPredicted RBP19.33■□□□□ 0.68
TRIM54-203ENST00000485306 STARD7Q9NQZ5 370 aa19.33■□□□□ 0.68
TRIM54-203ENST00000485306 IFIT3O14879 490 aaKnown RBP19.32■□□□□ 0.68
TRIM54-203ENST00000485306 ALDH5A1P51649 535 aaPredicted RBP19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms