RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 MAP2K1Q02750 393 aaPredicted RBP14.1□□□□□ -0.15
SDC1-206ENST00000482879 FAM110CQ1W6H9 321 aa14.1□□□□□ -0.15
SDC1-206ENST00000482879 TKFCQ3LXA3 575 aa14.1□□□□□ -0.15
SDC1-206ENST00000482879 C17orf99Q6UX52 265 aa14.1□□□□□ -0.15
SDC1-206ENST00000482879 RIOX2Q8IUF8 465 aa14.1□□□□□ -0.15
SDC1-206ENST00000482879 C8orf76Q96K31 380 aa14.1□□□□□ -0.15
SDC1-206ENST00000482879 IPO9Q96P70 1041 aaKnown RBP14.1□□□□□ -0.15
SDC1-206ENST00000482879 TRERF1Q96PN7 1200 aa14.1□□□□□ -0.15
SDC1-206ENST00000482879 MOV10L1Q9BXT6 1211 aaKnown RBP14.1□□□□□ -0.15
SDC1-206ENST00000482879 R3HDMLQ9H3Y0 253 aa14.1□□□□□ -0.15
SDC1-206ENST00000482879 SH3GLB2Q9NR46 395 aa14.1□□□□□ -0.15
SDC1-206ENST00000482879 HOMER2Q9NSB8 354 aa14.1□□□□□ -0.15
SDC1-206ENST00000482879 RIPK3Q9Y572 518 aa14.1□□□□□ -0.15
SDC1-206ENST00000482879 SLC25A27O95847 323 aa14.09□□□□□ -0.15
SDC1-206ENST00000482879 COPB2P35606 906 aa14.09□□□□□ -0.15
SDC1-206ENST00000482879 TRIM29Q14134 588 aa14.09□□□□□ -0.15
SDC1-206ENST00000482879 LARP1BQ659C4 914 aaKnown RBP14.09□□□□□ -0.15
SDC1-206ENST00000482879 TYW1BQ6NUM6 668 aa14.09□□□□□ -0.15
SDC1-206ENST00000482879 NCAPG2Q86XI2 1143 aa14.09□□□□□ -0.15
SDC1-206ENST00000482879 CCAR1Q8IX12 1150 aaKnown RBP14.09□□□□□ -0.15
SDC1-206ENST00000482879 CCDC12Q8WUD4 166 aaPredicted RBP14.09□□□□□ -0.15
SDC1-206ENST00000482879 BEGAINQ9BUH8 593 aa14.09□□□□□ -0.15
SDC1-206ENST00000482879 CWC22Q9HCG8 908 aaKnown RBP14.09□□□□□ -0.15
SDC1-206ENST00000482879 GJB4Q9NTQ9 266 aa14.09□□□□□ -0.15
SDC1-206ENST00000482879 RNF146Q9NTX7 359 aa14.09□□□□□ -0.15
SDC1-206ENST00000482879 SMCO2A6NFE2 343 aa14.08□□□□□ -0.16
SDC1-206ENST00000482879 ERCC3P19447 782 aa14.08□□□□□ -0.16
SDC1-206ENST00000482879 PDCP20941 246 aa14.08□□□□□ -0.16
SDC1-206ENST00000482879 NLRP5P59047 1200 aa14.08□□□□□ -0.16
SDC1-206ENST00000482879 MUM1L1Q5H9M0 696 aa14.08□□□□□ -0.16
SDC1-206ENST00000482879 PPP1R18Q6NYC8 613 aa14.08□□□□□ -0.16
SDC1-206ENST00000482879 SHCBP1Q8NEM2 672 aa14.08□□□□□ -0.16
SDC1-206ENST00000482879 CHST13Q8NET6 341 aa14.08□□□□□ -0.16
SDC1-206ENST00000482879 CCDC148Q8NFR7 591 aa14.08□□□□□ -0.16
SDC1-206ENST00000482879 CLEC4DQ8WXI8 215 aa14.08□□□□□ -0.16
SDC1-206ENST00000482879 SHISA4Q96DD7 197 aa14.08□□□□□ -0.16
SDC1-206ENST00000482879 CFHR5Q9BXR6 569 aa14.08□□□□□ -0.16
SDC1-206ENST00000482879 KCNJ14Q9UNX9 436 aa14.08□□□□□ -0.16
SDC1-206ENST00000482879 MGAMO43451 1857 aa14.08□□□□□ -0.16
SDC1-206ENST00000482879 H3BQV1 296 aa14.07□□□□□ -0.16
SDC1-206ENST00000482879 GUCY1B3Q02153 619 aa14.07□□□□□ -0.16
SDC1-206ENST00000482879 IFFO2Q5TF58 517 aa14.07□□□□□ -0.16
SDC1-206ENST00000482879 WDR78Q5VTH9 848 aa14.07□□□□□ -0.16
SDC1-206ENST00000482879 KRT40Q6A162 431 aa14.07□□□□□ -0.16
SDC1-206ENST00000482879 MCF2L2Q86YR7 1114 aa14.07□□□□□ -0.16
SDC1-206ENST00000482879 FAM177A1Q8N128 213 aaPredicted RBP14.07□□□□□ -0.16
SDC1-206ENST00000482879 ZMYND12Q9H0C1 365 aa14.07□□□□□ -0.16
SDC1-206ENST00000482879 PORCNQ9H237 461 aa14.07□□□□□ -0.16
SDC1-206ENST00000482879 MROH8Q9H579 483 aa14.07□□□□□ -0.16
SDC1-206ENST00000482879 ACAD9Q9H845 621 aa14.07□□□□□ -0.16
SDC1-206ENST00000482879 PSTPIP2Q9H939 334 aa14.07□□□□□ -0.16
SDC1-206ENST00000482879 EFCC1Q9HA90 598 aa14.07□□□□□ -0.16
SDC1-206ENST00000482879 C6orf50Q9HD87 102 aa14.07□□□□□ -0.16
SDC1-206ENST00000482879 SAGE1Q9NXZ1 904 aa14.07□□□□□ -0.16
SDC1-206ENST00000482879 FBXO40Q9UH90 709 aa14.07□□□□□ -0.16
SDC1-206ENST00000482879 ESYT2A0FGR8 921 aa14.06□□□□□ -0.16
SDC1-206ENST00000482879 NFIBO00712 420 aa14.06□□□□□ -0.16
SDC1-206ENST00000482879 OPLAHO14841 1288 aa14.06□□□□□ -0.16
SDC1-206ENST00000482879 ECM2O94769 699 aaPredicted RBP14.06□□□□□ -0.16
SDC1-206ENST00000482879 CALML3P27482 149 aa14.06□□□□□ -0.16
SDC1-206ENST00000482879 GNA11P29992 359 aa14.06□□□□□ -0.16
SDC1-206ENST00000482879 ADCY7P51828 1080 aa14.06□□□□□ -0.16
SDC1-206ENST00000482879 MRPL12P52815 198 aaKnown RBP14.06□□□□□ -0.16
SDC1-206ENST00000482879 FBXO18Q8NFZ0 1043 aa14.06□□□□□ -0.16
SDC1-206ENST00000482879 TBC1D5Q92609 795 aa14.06□□□□□ -0.16
SDC1-206ENST00000482879 CUL5Q93034 780 aa14.06□□□□□ -0.16
SDC1-206ENST00000482879 PHF20Q9BVI0 1012 aa14.06□□□□□ -0.16
SDC1-206ENST00000482879 GLT8D2Q9H1C3 349 aa14.06□□□□□ -0.16
SDC1-206ENST00000482879 RIC8AQ9NPQ8 531 aa14.06□□□□□ -0.16
SDC1-206ENST00000482879 WBP1LQ9NX94 342 aa14.06□□□□□ -0.16
SDC1-206ENST00000482879 RBBP6Q7Z6E9 1792 aaKnown RBP14.06□□□□□ -0.16
SDC1-206ENST00000482879 PLXNB2O15031 1838 aa14.06□□□□□ -0.16
SDC1-206ENST00000482879 GCOM1H8Y6P7 765 aaPredicted RBP14.05□□□□□ -0.16
SDC1-206ENST00000482879 CFBP00751 764 aa14.05□□□□□ -0.16
SDC1-206ENST00000482879 MMP1P03956 469 aa14.05□□□□□ -0.16
SDC1-206ENST00000482879 POLR2MP0CAP2 368 aa14.05□□□□□ -0.16
SDC1-206ENST00000482879 SYT1P21579 422 aa14.05□□□□□ -0.16
SDC1-206ENST00000482879 MAPK4P31152 587 aa14.05□□□□□ -0.16
SDC1-206ENST00000482879 SAFBQ15424 915 aaKnown RBP eCLIP14.05□□□□□ -0.16
SDC1-206ENST00000482879 GALNT17Q6IS24 598 aa14.05□□□□□ -0.16
SDC1-206ENST00000482879 NSMFQ6X4W1 530 aa14.05□□□□□ -0.16
SDC1-206ENST00000482879 RGS22Q8NE09 1264 aa14.05□□□□□ -0.16
SDC1-206ENST00000482879 BICD2Q8TD16 824 aa14.05□□□□□ -0.16
SDC1-206ENST00000482879 PCDHA4Q9UN74 947 aa14.05□□□□□ -0.16
SDC1-206ENST00000482879 VPS37CA5D8V6 355 aaPredicted RBP14.04□□□□□ -0.16
SDC1-206ENST00000482879 GPR25O00155 361 aa14.04□□□□□ -0.16
SDC1-206ENST00000482879 STX6O43752 255 aa14.04□□□□□ -0.16
SDC1-206ENST00000482879 FCER1AP12319 257 aa14.04□□□□□ -0.16
SDC1-206ENST00000482879 SP3Q02447 781 aa14.04□□□□□ -0.16
SDC1-206ENST00000482879 UBE2SQ16763 222 aa14.04□□□□□ -0.16
SDC1-206ENST00000482879 USP17L6PQ6QN14 398 aa14.04□□□□□ -0.16
SDC1-206ENST00000482879 RNF207Q6ZRF8 634 aa14.04□□□□□ -0.16
SDC1-206ENST00000482879 GPR142Q7Z601 462 aa14.04□□□□□ -0.16
SDC1-206ENST00000482879 PLEKHH3Q7Z736 793 aa14.04□□□□□ -0.16
SDC1-206ENST00000482879 BLIDQ8IZY5 108 aa14.04□□□□□ -0.16
SDC1-206ENST00000482879 ANKRD35Q8N283 1001 aa14.04□□□□□ -0.16
SDC1-206ENST00000482879 SAMD3Q8N6K7 520 aa14.04□□□□□ -0.16
SDC1-206ENST00000482879 MMP19Q99542 508 aa14.04□□□□□ -0.16
SDC1-206ENST00000482879 BRMS1Q9HCU9 246 aa14.04□□□□□ -0.16
SDC1-206ENST00000482879 BIN2Q9UBW5 565 aaPredicted RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms