RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 NARFQ9UHQ1 456 aa8.06□□□□□ -1.12
VPS50-215ENST00000480943 ANKRD36CQ5JPF3 1778 aa8.06□□□□□ -1.12
VPS50-215ENST00000480943 MYBBP1AQ9BQG0 1328 aaKnown RBP8.05□□□□□ -1.12
VPS50-215ENST00000480943 A0A0G2JLW4 131 aa8.05□□□□□ -1.12
VPS50-215ENST00000480943 POLRMTO00411 1230 aaKnown RBP8.05□□□□□ -1.12
VPS50-215ENST00000480943 TIAF1O95411 115 aa8.05□□□□□ -1.12
VPS50-215ENST00000480943 STARD3NLO95772 234 aa8.05□□□□□ -1.12
VPS50-215ENST00000480943 DPEP1P16444 411 aa8.05□□□□□ -1.12
VPS50-215ENST00000480943 GRM2Q14416 872 aa8.05□□□□□ -1.12
VPS50-215ENST00000480943 RALBP1Q15311 655 aa8.05□□□□□ -1.12
VPS50-215ENST00000480943 EXOSC6Q5RKV6 272 aaKnown RBP8.05□□□□□ -1.12
VPS50-215ENST00000480943 ZSWIM9Q86XI8 627 aa8.05□□□□□ -1.12
VPS50-215ENST00000480943 PI4K2BQ8TCG2 481 aa8.05□□□□□ -1.12
VPS50-215ENST00000480943 PLEKHF1Q96S99 279 aa8.05□□□□□ -1.12
VPS50-215ENST00000480943 DICER1Q9UPY3 1922 aaKnown RBP8.05□□□□□ -1.12
VPS50-215ENST00000480943 ATP10DQ9P241 1426 aa8.04□□□□□ -1.12
VPS50-215ENST00000480943 A0A087WZG4 1122 aa8.04□□□□□ -1.12
VPS50-215ENST00000480943 TMEM238LA0A1B0GVL6 79 aa8.04□□□□□ -1.12
VPS50-215ENST00000480943 PRAMEF22A3QJZ6 481 aa8.04□□□□□ -1.12
VPS50-215ENST00000480943 HTATSF1O43719 755 aaKnown RBP8.04□□□□□ -1.12
VPS50-215ENST00000480943 PSPNO60542 156 aa8.04□□□□□ -1.12
VPS50-215ENST00000480943 A1BGP04217 495 aa8.04□□□□□ -1.12
VPS50-215ENST00000480943 MAOBP27338 520 aa8.04□□□□□ -1.12
VPS50-215ENST00000480943 TM4SF1P30408 202 aa8.04□□□□□ -1.12
VPS50-215ENST00000480943 PIP4K2AP48426 406 aaPredicted RBP8.04□□□□□ -1.12
VPS50-215ENST00000480943 EIF5P55010 431 aaKnown RBP8.04□□□□□ -1.12
VPS50-215ENST00000480943 TGFB2P61812 414 aa8.04□□□□□ -1.12
VPS50-215ENST00000480943 POU4F3Q15319 338 aa8.04□□□□□ -1.12
VPS50-215ENST00000480943 NFE2L2Q16236 605 aa8.04□□□□□ -1.12
VPS50-215ENST00000480943 HP1BP3Q5SSJ5 553 aaPredicted RBP8.04□□□□□ -1.12
VPS50-215ENST00000480943 EZH1Q92800 747 aaPredicted RBP8.04□□□□□ -1.12
VPS50-215ENST00000480943 CORO1BQ9BR76 489 aa8.04□□□□□ -1.12
VPS50-215ENST00000480943 TEX13AQ9BXU3 409 aaPredicted RBP8.04□□□□□ -1.12
VPS50-215ENST00000480943 MBNL3Q9NUK0 354 aaKnown RBP8.04□□□□□ -1.12
VPS50-215ENST00000480943 CARMIL3Q8ND23 1372 aa8.04□□□□□ -1.12
VPS50-215ENST00000480943 FER1L6Q2WGJ9 1857 aa8.04□□□□□ -1.12
VPS50-215ENST00000480943 ADCY9O60503 1353 aa8.03□□□□□ -1.12
VPS50-215ENST00000480943 PNMA6FA0A0J9YX94 578 aa8.03□□□□□ -1.12
VPS50-215ENST00000480943 TREHO43280 583 aa8.03□□□□□ -1.12
VPS50-215ENST00000480943 IL6STP40189 918 aaPredicted RBP8.03□□□□□ -1.12
VPS50-215ENST00000480943 PLCB3Q01970 1234 aa8.03□□□□□ -1.12
VPS50-215ENST00000480943 DSC3Q14574 896 aa8.03□□□□□ -1.12
VPS50-215ENST00000480943 NFIXQ14938 502 aa8.03□□□□□ -1.12
VPS50-215ENST00000480943 PI16Q6UXB8 463 aa8.03□□□□□ -1.12
VPS50-215ENST00000480943 NPM2Q86SE8 214 aaKnown RBP8.03□□□□□ -1.12
VPS50-215ENST00000480943 LRRN4CLQ8ND94 238 aa8.03□□□□□ -1.12
VPS50-215ENST00000480943 RELTQ969Z4 430 aa8.03□□□□□ -1.12
VPS50-215ENST00000480943 TRIM56Q9BRZ2 755 aaKnown RBP8.03□□□□□ -1.12
VPS50-215ENST00000480943 THUMPD2Q9BTF0 503 aaKnown RBP8.03□□□□□ -1.12
VPS50-215ENST00000480943 TRAIPQ9BWF2 469 aa8.03□□□□□ -1.12
VPS50-215ENST00000480943 PNNQ9H307 717 aaKnown RBP8.03□□□□□ -1.12
VPS50-215ENST00000480943 ZFYVE1Q9HBF4 777 aa8.03□□□□□ -1.12
VPS50-215ENST00000480943 MIS18AQ9NYP9 233 aa8.03□□□□□ -1.12
VPS50-215ENST00000480943 USP16Q9Y5T5 823 aa8.03□□□□□ -1.12
VPS50-215ENST00000480943 TNRC6CQ9HCJ0 1690 aaKnown RBP8.02□□□□□ -1.13
VPS50-215ENST00000480943 SLX4Q8IY92 1834 aa8.02□□□□□ -1.13
VPS50-215ENST00000480943 NFIBO00712 420 aa8.02□□□□□ -1.13
VPS50-215ENST00000480943 SERPINB2P05120 415 aa8.02□□□□□ -1.13
VPS50-215ENST00000480943 SNRPA1P09661 255 aaKnown RBP8.02□□□□□ -1.13
VPS50-215ENST00000480943 DRD2P14416 443 aa8.02□□□□□ -1.13
VPS50-215ENST00000480943 CHRNA5P30532 468 aa8.02□□□□□ -1.13
VPS50-215ENST00000480943 MAP7Q14244 749 aa8.02□□□□□ -1.13
VPS50-215ENST00000480943 TAF7Q15545 349 aaPredicted RBP8.02□□□□□ -1.13
VPS50-215ENST00000480943 KCNMB1Q16558 191 aa8.02□□□□□ -1.13
VPS50-215ENST00000480943 RPS26P11Q5JNZ5 115 aaPredicted RBP8.02□□□□□ -1.13
VPS50-215ENST00000480943 CDPF1Q6NVV7 123 aa8.02□□□□□ -1.13
VPS50-215ENST00000480943 SYDE1Q6ZW31 735 aaPredicted RBP8.02□□□□□ -1.13
VPS50-215ENST00000480943 WFDC3Q8IUB2 231 aa8.02□□□□□ -1.13
VPS50-215ENST00000480943 LAMB2P55268 1798 aa8.02□□□□□ -1.13
VPS50-215ENST00000480943 CTSBP07858 339 aa8.01□□□□□ -1.13
VPS50-215ENST00000480943 KCNA3P22001 575 aa8.01□□□□□ -1.13
VPS50-215ENST00000480943 WDR43Q15061 677 aaKnown RBP eCLIP8.01□□□□□ -1.13
VPS50-215ENST00000480943 ENOX2Q16206 610 aaKnown RBP8.01□□□□□ -1.13
VPS50-215ENST00000480943 TBC1D9BQ66K14 1250 aa8.01□□□□□ -1.13
VPS50-215ENST00000480943 DTHD1Q6ZMT9 781 aa8.01□□□□□ -1.13
VPS50-215ENST00000480943 ZNF765Q7L2R6 523 aa8.01□□□□□ -1.13
VPS50-215ENST00000480943 ZSCAN29Q8IWY8 852 aaPredicted RBP8.01□□□□□ -1.13
VPS50-215ENST00000480943 CCDC146Q8IYE0 955 aa8.01□□□□□ -1.13
VPS50-215ENST00000480943 PNISRQ8TF01 805 aaKnown RBP8.01□□□□□ -1.13
VPS50-215ENST00000480943 ZNF526Q8TF50 670 aaPredicted RBP8.01□□□□□ -1.13
VPS50-215ENST00000480943 GATA6Q92908 595 aa8.01□□□□□ -1.13
VPS50-215ENST00000480943 PPP4R2Q9NY27 417 aa8.01□□□□□ -1.13
VPS50-215ENST00000480943 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.01□□□□□ -1.13
VPS50-215ENST00000480943 PATL2C9JE40 543 aaKnown RBP8□□□□□ -1.13
VPS50-215ENST00000480943 CAMTA2O94983 1202 aa8□□□□□ -1.13
VPS50-215ENST00000480943 ECEL1O95672 775 aa8□□□□□ -1.13
VPS50-215ENST00000480943 ADH5P11766 374 aa8□□□□□ -1.13
VPS50-215ENST00000480943 FCGRTP55899 365 aa8□□□□□ -1.13
VPS50-215ENST00000480943 RIPK4P57078 832 aa8□□□□□ -1.13
VPS50-215ENST00000480943 SOX4Q06945 474 aaPredicted RBP8□□□□□ -1.13
VPS50-215ENST00000480943 AP3B2Q13367 1082 aa8□□□□□ -1.13
VPS50-215ENST00000480943 DALRD3Q5D0E6 543 aaKnown RBP8□□□□□ -1.13
VPS50-215ENST00000480943 ARHGAP27Q6ZUM4 889 aa8□□□□□ -1.13
VPS50-215ENST00000480943 C2CD4AQ8NCU7 369 aaPredicted RBP8□□□□□ -1.13
VPS50-215ENST00000480943 BCO2Q9BYV7 579 aa8□□□□□ -1.13
VPS50-215ENST00000480943 PRKRIP1Q9H875 184 aaPredicted RBP8□□□□□ -1.13
VPS50-215ENST00000480943 RRP7AQ9Y3A4 280 aaKnown RBP8□□□□□ -1.13
VPS50-215ENST00000480943 NPHP1O15259 732 aa7.99□□□□□ -1.13
VPS50-215ENST00000480943 ZEB1P37275 1124 aaPredicted RBP7.99□□□□□ -1.13
VPS50-215ENST00000480943 TMPOP42166 694 aaKnown RBP7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms