RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 GPR62Q9BZJ7 368 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 ASCC2Q9H1I8 757 aaPredicted RBP7.03□□□□□ -1.28
UPF3B-203ENST00000478840 GTF2IRD1Q9UHL9 959 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 TRAF6Q9Y4K3 522 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 BPIP17213 487 aa7.02□□□□□ -1.29
UPF3B-203ENST00000478840 RXRBP28702 533 aa7.02□□□□□ -1.29
UPF3B-203ENST00000478840 BMP8BP34820 402 aa7.02□□□□□ -1.29
UPF3B-203ENST00000478840 STRN3Q13033 797 aa7.02□□□□□ -1.29
UPF3B-203ENST00000478840 FAM50AQ14320 339 aaKnown RBP7.02□□□□□ -1.29
UPF3B-203ENST00000478840 CFAP100Q494V2 611 aa7.02□□□□□ -1.29
UPF3B-203ENST00000478840 E4F1Q66K89 784 aaPredicted RBP7.02□□□□□ -1.29
UPF3B-203ENST00000478840 CDCA2Q69YH5 1023 aaPredicted RBP7.02□□□□□ -1.29
UPF3B-203ENST00000478840 CWF19L1Q69YN2 538 aaKnown RBP7.02□□□□□ -1.29
UPF3B-203ENST00000478840 OGFOD3Q6PK18 319 aa7.02□□□□□ -1.29
UPF3B-203ENST00000478840 UBE2R2Q712K3 238 aaPredicted RBP7.02□□□□□ -1.29
UPF3B-203ENST00000478840 TMEM151AQ8N4L1 468 aa7.02□□□□□ -1.29
UPF3B-203ENST00000478840 ZNF655Q8N720 491 aaPredicted RBP7.02□□□□□ -1.29
UPF3B-203ENST00000478840 WDR66Q8TBY9 1149 aa7.02□□□□□ -1.29
UPF3B-203ENST00000478840 HEXIM2Q96MH2 286 aaKnown RBP7.02□□□□□ -1.29
UPF3B-203ENST00000478840 ASPSCR1Q9BZE9 553 aa7.02□□□□□ -1.29
UPF3B-203ENST00000478840 GPR27Q9NS67 375 aa7.02□□□□□ -1.29
UPF3B-203ENST00000478840 GEMIN8Q9NWZ8 242 aaKnown RBP7.02□□□□□ -1.29
UPF3B-203ENST00000478840 BACE2Q9Y5Z0 518 aa7.02□□□□□ -1.29
UPF3B-203ENST00000478840 SHISA3A0PJX4 238 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 ARVCFO00192 962 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 ZEB2O60315 1214 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 KPNA6O60684 536 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 THBDP07204 575 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 FAM87AP0C7U9 286 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 TNK2Q07912 1038 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 STAT4Q14765 748 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 TTF1Q15361 905 aaPredicted RBP7.01□□□□□ -1.29
UPF3B-203ENST00000478840 NFKBIBQ15653 356 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 NFE2Q16621 373 aaPredicted RBP7.01□□□□□ -1.29
UPF3B-203ENST00000478840 DPY19L1Q2PZI1 675 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 RCSD1Q6JBY9 416 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 KCNT2Q6UVM3 1135 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 TXNRD3Q86VQ6 643 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 CLEC10AQ8IUN9 316 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.01□□□□□ -1.29
UPF3B-203ENST00000478840 RELTQ969Z4 430 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 FAM83CQ9BQN1 747 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 SSBP4Q9BWG4 385 aaPredicted RBP7.01□□□□□ -1.29
UPF3B-203ENST00000478840 CHMP4AQ9BY43 222 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 SLC5A4Q9NY91 659 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 TCEAL9Q9UHQ7 104 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 CAPN6Q9Y6Q1 641 aa7.01□□□□□ -1.29
UPF3B-203ENST00000478840 C2orf71A6NGG8 1288 aa7□□□□□ -1.29
UPF3B-203ENST00000478840 RBAK-RBAKDNI3L0D1 243 aa7□□□□□ -1.29
UPF3B-203ENST00000478840 ARNTLO00327 626 aa7□□□□□ -1.29
UPF3B-203ENST00000478840 NOP2P46087 812 aaKnown RBP7□□□□□ -1.29
UPF3B-203ENST00000478840 GPR85P60893 370 aa7□□□□□ -1.29
UPF3B-203ENST00000478840 GUCY1A3Q02108 690 aa7□□□□□ -1.29
UPF3B-203ENST00000478840 BEND4Q6ZU67 534 aa7□□□□□ -1.29
UPF3B-203ENST00000478840 LHFPL2Q6ZUX7 228 aa7□□□□□ -1.29
UPF3B-203ENST00000478840 SPATS2Q86XZ4 545 aaKnown RBP7□□□□□ -1.29
UPF3B-203ENST00000478840 PPIL6Q8IXY8 311 aa7□□□□□ -1.29
UPF3B-203ENST00000478840 IFNL3Q8IZI9 196 aa7□□□□□ -1.29
UPF3B-203ENST00000478840 C8orf48Q96LL4 319 aa7□□□□□ -1.29
UPF3B-203ENST00000478840 FCRL3Q96P31 734 aaPredicted RBP7□□□□□ -1.29
UPF3B-203ENST00000478840 TTC1Q99614 292 aa7□□□□□ -1.29
UPF3B-203ENST00000478840 SLC12A9Q9BXP2 914 aa7□□□□□ -1.29
UPF3B-203ENST00000478840 PUS7LQ9H0K6 701 aaKnown RBP7□□□□□ -1.29
UPF3B-203ENST00000478840 IFT22Q9H7X7 185 aa7□□□□□ -1.29
UPF3B-203ENST00000478840 MINPP1Q9UNW1 487 aa7□□□□□ -1.29
UPF3B-203ENST00000478840 PCDHA9Q9Y5H5 950 aa7□□□□□ -1.29
UPF3B-203ENST00000478840 STXBP3O00186 592 aa6.99□□□□□ -1.29
UPF3B-203ENST00000478840 MEFVO15553 781 aaPredicted RBP6.99□□□□□ -1.29
UPF3B-203ENST00000478840 DHX15O43143 795 aaKnown RBP6.99□□□□□ -1.29
UPF3B-203ENST00000478840 CBX7O95931 251 aa6.99□□□□□ -1.29
UPF3B-203ENST00000478840 APPP05067 770 aa6.99□□□□□ -1.29
UPF3B-203ENST00000478840 CD3EP07766 207 aa6.99□□□□□ -1.29
UPF3B-203ENST00000478840 LTBRP36941 435 aa6.99□□□□□ -1.29
UPF3B-203ENST00000478840 MCL1Q07820 350 aa6.99□□□□□ -1.29
UPF3B-203ENST00000478840 MTMR1Q13613 665 aa6.99□□□□□ -1.29
UPF3B-203ENST00000478840 ABHD17CQ6PCB6 329 aa6.99□□□□□ -1.29
UPF3B-203ENST00000478840 CRTC3Q6UUV7 619 aa6.99□□□□□ -1.29
UPF3B-203ENST00000478840 ZAR1Q86SH2 424 aa6.99□□□□□ -1.29
UPF3B-203ENST00000478840 DDX53Q86TM3 631 aaKnown RBP6.99□□□□□ -1.29
UPF3B-203ENST00000478840 RAVER1Q8IY67 606 aaKnown RBP6.99□□□□□ -1.29
UPF3B-203ENST00000478840 MFSD4AQ8N468 514 aa6.99□□□□□ -1.29
UPF3B-203ENST00000478840 OR2W6PQ8NHA6 318 aa6.99□□□□□ -1.29
UPF3B-203ENST00000478840 TCTN2Q96GX1 697 aa6.99□□□□□ -1.29
UPF3B-203ENST00000478840 WNK4Q96J92 1243 aa6.99□□□□□ -1.29
UPF3B-203ENST00000478840 PHF20Q9BVI0 1012 aa6.99□□□□□ -1.29
UPF3B-203ENST00000478840 DUSP15Q9H1R2 295 aaPredicted RBP6.99□□□□□ -1.29
UPF3B-203ENST00000478840 APOBEC2Q9Y235 224 aaKnown RBP6.99□□□□□ -1.29
UPF3B-203ENST00000478840 PRR33A8MZF0 331 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 CBX4O00257 560 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 WNT9AO14904 365 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 KATNA1O75449 491 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 ZNF205O95201 554 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 VAV1P15498 845 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 SCNN1BP51168 640 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 KCNAB2Q13303 367 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 CYP27C1Q4G0S4 372 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 PIK3R6Q5UE93 754 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 EEF1DP3Q658K8 133 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 IQCEQ6IPM2 695 aa6.98□□□□□ -1.29
UPF3B-203ENST00000478840 LBX2Q6XYB7 198 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms