RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 CCT5P48643 541 aa5.57□□□□□ -1.52
CCDC39-204ENST00000476379 UBE2SQ16763 222 aa5.57□□□□□ -1.52
CCDC39-204ENST00000476379 SAMD7Q7Z3H4 446 aa5.57□□□□□ -1.52
CCDC39-204ENST00000476379 MB21D2Q8IYB1 491 aaPredicted RBP5.57□□□□□ -1.52
CCDC39-204ENST00000476379 NLGN1Q8N2Q7 840 aa5.57□□□□□ -1.52
CCDC39-204ENST00000476379 LPIN2Q92539 896 aa5.57□□□□□ -1.52
CCDC39-204ENST00000476379 CRNKL1Q9BZJ0 848 aaKnown RBP5.57□□□□□ -1.52
CCDC39-204ENST00000476379 MLXIPQ9HAP2 919 aa5.57□□□□□ -1.52
CCDC39-204ENST00000476379 HOMER2Q9NSB8 354 aa5.57□□□□□ -1.52
CCDC39-204ENST00000476379 CLEC11AQ9Y240 323 aa5.57□□□□□ -1.52
CCDC39-204ENST00000476379 POTEMA6NI47 508 aa5.57□□□□□ -1.52
CCDC39-204ENST00000476379 KIAA0754O94854 1291 aa5.57□□□□□ -1.52
CCDC39-204ENST00000476379 PCCAP05165 728 aaPredicted RBP5.57□□□□□ -1.52
CCDC39-204ENST00000476379 HOXB7P09629 217 aa5.57□□□□□ -1.52
CCDC39-204ENST00000476379 FCER1AP12319 257 aa5.57□□□□□ -1.52
CCDC39-204ENST00000476379 IFFO1Q0D2I5 559 aa5.57□□□□□ -1.52
CCDC39-204ENST00000476379 RAD9BQ6WBX8 426 aa5.57□□□□□ -1.52
CCDC39-204ENST00000476379 MGARPQ8TDB4 240 aa5.57□□□□□ -1.52
CCDC39-204ENST00000476379 STRBPQ96SI9 672 aaKnown RBP5.57□□□□□ -1.52
CCDC39-204ENST00000476379 MOCS3O95396 460 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 PAFAH1B1P43034 410 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 IRX5P78411 483 aaPredicted RBP5.56□□□□□ -1.52
CCDC39-204ENST00000476379 MTM1Q13496 603 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 KCTD1Q719H9 257 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 VSTM4Q8IW00 320 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 THOC1Q96FV9 657 aaKnown RBP5.56□□□□□ -1.52
CCDC39-204ENST00000476379 EHD4Q9H223 541 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 DPH5Q9H2P9 285 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 TMEM260Q9NX78 707 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 LRWD1Q9UFC0 647 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 PCDHB13Q9Y5F0 798 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 NHSL1Q5SYE7 1610 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 TCP10L2B9ZVM9 353 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 PPEF1O14829 653 aaPredicted RBP5.56□□□□□ -1.52
CCDC39-204ENST00000476379 CAVIN2O95810 425 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 PLEKP08567 350 aaPredicted RBP5.56□□□□□ -1.52
CCDC39-204ENST00000476379 KRT13P13646 458 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 CD44P16070 742 aaKnown RBP5.56□□□□□ -1.52
CCDC39-204ENST00000476379 YY1P25490 414 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 VSNL1P62760 191 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 EXOSC10Q01780 885 aaKnown RBP5.56□□□□□ -1.52
CCDC39-204ENST00000476379 SH2D3CQ8N5H7 860 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 PNMA1Q8ND90 353 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 UBLCP1Q8WVY7 318 aaPredicted RBP5.56□□□□□ -1.52
CCDC39-204ENST00000476379 TAF4BQ92750 862 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 AKT1S1Q96B36 256 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 SCLT1Q96NL6 688 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 ZSCAN10Q96SZ4 725 aaPredicted RBP5.56□□□□□ -1.52
CCDC39-204ENST00000476379 POLR3EQ9NVU0 708 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 ANKRD62A6NC57 917 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 MMP1P03956 469 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 HARSP12081 509 aaKnown RBP5.56□□□□□ -1.52
CCDC39-204ENST00000476379 UBE4AQ14139 1066 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 KRT31Q15323 416 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 ARHGAP44Q17R89 818 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 DPH6Q7L8W6 267 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 ADGRA1Q86SQ6 560 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 CCDC50Q8IVM0 306 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 CALML4Q96GE6 196 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 SELENOSQ9BQE4 189 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 LY9Q9HBG7 655 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 AGPAT5Q9NUQ2 364 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 GOLGA6L10A6NI86 522 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 DDNO94850 711 aaPredicted RBP5.56□□□□□ -1.52
CCDC39-204ENST00000476379 EHHADHQ08426 723 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 MFSD14BQ5SR56 506 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 TEX11Q8IYF3 940 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 SMARCC2Q8TAQ2 1214 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 SNX29Q8TEQ0 813 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 PAGE5Q96GU1 130 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 MLXIPLQ9NP71 852 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 ZNF446Q9NWS9 450 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 GGT7Q9UJ14 662 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 ADAM21Q9UKJ8 722 aa5.56□□□□□ -1.52
CCDC39-204ENST00000476379 XIRP2A4UGR9 3374 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 HTTP42858 3142 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 CLIC2O15247 247 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 KIF20AO95235 890 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 LDHBP07195 334 aaKnown RBP5.55□□□□□ -1.52
CCDC39-204ENST00000476379 POTEIP0CG38 1075 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 POTEJP0CG39 1038 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 HIBADHP31937 336 aaKnown RBP5.55□□□□□ -1.52
CCDC39-204ENST00000476379 SSTR3P32745 418 aaPredicted RBP5.55□□□□□ -1.52
CCDC39-204ENST00000476379 CASP7P55210 303 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 DHX9Q08211 1270 aaKnown RBP5.55□□□□□ -1.52
CCDC39-204ENST00000476379 ENAHQ8N8S7 591 aaPredicted RBP5.55□□□□□ -1.52
CCDC39-204ENST00000476379 ENGASEQ8NFI3 743 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 MS4A14Q96JA4 679 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 TMEM87BQ96K49 555 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 CNNM2Q9H8M5 875 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 SPON1Q9HCB6 807 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 RNF181Q9P0P0 153 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 ARPP21Q9UBL0 812 aaPredicted RBP5.55□□□□□ -1.52
CCDC39-204ENST00000476379 COL18A1P39060 1754 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 PLCH1Q4KWH8 1693 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 MED23Q9ULK4 1368 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 SMCO2A6NFE2 343 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 GSG1L2A8MUP6 293 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 CEP104O60308 925 aa5.55□□□□□ -1.52
CCDC39-204ENST00000476379 USO1O60763 962 aaKnown RBP5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms