RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135	TINF2	Q9BSI4	451 aa		8.87	□□□□□ -0.99
HDAC9-223	ENST00000476135	TRIM34	Q9BYJ4	488 aa		8.87	□□□□□ -0.99
HDAC9-223	ENST00000476135	KIAA1683	Q9H0B3	1180 aa		8.87	□□□□□ -0.99
HDAC9-223	ENST00000476135	UBE2Z	Q9H832	354 aa	Predicted RBP	8.87	□□□□□ -0.99
HDAC9-223	ENST00000476135	CERS4	Q9HA82	394 aa		8.87	□□□□□ -0.99
HDAC9-223	ENST00000476135	HOXC10	Q9NYD6	342 aa		8.87	□□□□□ -0.99
HDAC9-223	ENST00000476135	SPTBN4	Q9H254	2564 aa		8.86	□□□□□ -0.99
HDAC9-223	ENST00000476135	CDK5RAP2	Q96SN8	1893 aa		8.86	□□□□□ -0.99
HDAC9-223	ENST00000476135	TAL1	P17542	331 aa	Predicted RBP	8.86	□□□□□ -0.99
HDAC9-223	ENST00000476135	GRB10	Q13322	594 aa		8.86	□□□□□ -0.99
HDAC9-223	ENST00000476135	RASGRF1	Q13972	1273 aa		8.86	□□□□□ -0.99
HDAC9-223	ENST00000476135	COG2	Q14746	738 aa		8.86	□□□□□ -0.99
HDAC9-223	ENST00000476135	ZYX	Q15942	572 aa	Known RBP	8.86	□□□□□ -0.99
HDAC9-223	ENST00000476135	CCDC102B	Q68D86	513 aa		8.86	□□□□□ -0.99
HDAC9-223	ENST00000476135	ATG9A	Q7Z3C6	839 aa		8.86	□□□□□ -0.99
HDAC9-223	ENST00000476135	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	8.86	□□□□□ -0.99
HDAC9-223	ENST00000476135	PCSK9	Q8NBP7	692 aa	Known RBP	8.86	□□□□□ -0.99
HDAC9-223	ENST00000476135	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	8.86	□□□□□ -0.99
HDAC9-223	ENST00000476135	ARNTL2	Q8WYA1	636 aa		8.86	□□□□□ -0.99
HDAC9-223	ENST00000476135	DIS3	Q9Y2L1	958 aa	Known RBP	8.86	□□□□□ -0.99
HDAC9-223	ENST00000476135	COL4A4	P53420	1690 aa	Predicted RBP	8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	ZBBX	A8MT70	800 aa		8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	LPXN	O60711	386 aa		8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	AVP	P01185	164 aa		8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	GH2	P01242	217 aa		8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	FCER1A	P12319	257 aa		8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	IL9	P15248	144 aa		8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	RFX5	P48382	616 aa	Predicted RBP	8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	TAP1	Q03518	808 aa		8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	SLC4A10	Q6U841	1118 aa		8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	CRIPAK	Q8N1N5	446 aa		8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	MB21D1	Q8N884	522 aa		8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	ANKS1A	Q92625	1134 aa		8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	VTI1A	Q96AJ9	217 aa		8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	LENG1	Q96BZ8	264 aa	Predicted RBP	8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	NSUN4	Q96CB9	384 aa	Known RBP	8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	REPIN1	Q9BWE0	567 aa	Known RBP	8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	HIPK3	Q9H422	1215 aa		8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	RPAP3	Q9H6T3	665 aa	Predicted RBP	8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	CEP126	Q9P2H0	1117 aa		8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	FAM184B	Q9ULE4	1060 aa		8.85	□□□□□ -0.99
HDAC9-223	ENST00000476135	FOCAD	Q5VW36	1801 aa		8.84	□□□□□ -0.99
HDAC9-223	ENST00000476135	WNT7A	O00755	349 aa		8.84	□□□□□ -0.99
HDAC9-223	ENST00000476135	DUSP11	O75319	330 aa	Known RBP	8.84	□□□□□ -0.99
HDAC9-223	ENST00000476135	CIAO1	O76071	339 aa		8.84	□□□□□ -0.99
HDAC9-223	ENST00000476135	ASGR1	P07306	291 aa		8.84	□□□□□ -0.99
HDAC9-223	ENST00000476135	PFKM	P08237	780 aa		8.84	□□□□□ -0.99
HDAC9-223	ENST00000476135	PKN1	Q16512	942 aa		8.84	□□□□□ -0.99
HDAC9-223	ENST00000476135	ZNF792	Q3KQV3	632 aa		8.84	□□□□□ -0.99
HDAC9-223	ENST00000476135	PTCRA	Q6ISU1	281 aa	Predicted RBP	8.84	□□□□□ -0.99
HDAC9-223	ENST00000476135	ATF7IP	Q6VMQ6	1270 aa		8.84	□□□□□ -0.99
HDAC9-223	ENST00000476135	NCAPG2	Q86XI2	1143 aa		8.84	□□□□□ -0.99
HDAC9-223	ENST00000476135	PHOSPHO2	Q8TCD6	241 aa		8.84	□□□□□ -0.99
HDAC9-223	ENST00000476135	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	8.84	□□□□□ -0.99
HDAC9-223	ENST00000476135	SLC9A7	Q96T83	725 aa		8.84	□□□□□ -0.99
HDAC9-223	ENST00000476135	DACH1	Q9UI36	760 aa		8.84	□□□□□ -0.99
HDAC9-223	ENST00000476135	CNPY2	Q9Y2B0	182 aa		8.84	□□□□□ -0.99
HDAC9-223	ENST00000476135	ZNF536	O15090	1300 aa		8.83	□□□□□ -1
HDAC9-223	ENST00000476135	IL16	Q14005	1332 aa		8.83	□□□□□ -1
HDAC9-223	ENST00000476135	UMODL1	Q5DID0	1318 aa		8.83	□□□□□ -1
HDAC9-223	ENST00000476135	MYADML2	A6NDP7	307 aa		8.83	□□□□□ -1
HDAC9-223	ENST00000476135	SLC25A27	O95847	323 aa		8.83	□□□□□ -1
HDAC9-223	ENST00000476135	CCL23	P55773	120 aa		8.83	□□□□□ -1
HDAC9-223	ENST00000476135	TCF15	Q12870	199 aa		8.83	□□□□□ -1
HDAC9-223	ENST00000476135	CCDC27	Q2M243	656 aa		8.83	□□□□□ -1
HDAC9-223	ENST00000476135	TATDN1	Q6P1N9	297 aa		8.83	□□□□□ -1
HDAC9-223	ENST00000476135	BMP8A	Q7Z5Y6	402 aa		8.83	□□□□□ -1
HDAC9-223	ENST00000476135	MSL3	Q8N5Y2	521 aa	Known RBP	8.83	□□□□□ -1
HDAC9-223	ENST00000476135	KRI1	Q8N9T8	703 aa	Known RBP	8.83	□□□□□ -1
HDAC9-223	ENST00000476135	SLC43A3	Q8NBI5	491 aa		8.83	□□□□□ -1
HDAC9-223	ENST00000476135	ACER1	Q8TDN7	264 aa		8.83	□□□□□ -1
HDAC9-223	ENST00000476135	VWCE	Q96DN2	955 aa		8.83	□□□□□ -1
HDAC9-223	ENST00000476135	NOL10	Q9BSC4	688 aa	Known RBP	8.83	□□□□□ -1
HDAC9-223	ENST00000476135	NOC4L	Q9BVI4	516 aa	Known RBP	8.83	□□□□□ -1
HDAC9-223	ENST00000476135	SEZ6L	Q9BYH1	1024 aa		8.83	□□□□□ -1
HDAC9-223	ENST00000476135	UPF3B	Q9BZI7	483 aa	Known RBP	8.83	□□□□□ -1
HDAC9-223	ENST00000476135	UPF3A	Q9H1J1	476 aa	Known RBP	8.83	□□□□□ -1
HDAC9-223	ENST00000476135	WNT8A	Q9H1J5	351 aa		8.83	□□□□□ -1
HDAC9-223	ENST00000476135	SPC25	Q9HBM1	224 aa		8.83	□□□□□ -1
HDAC9-223	ENST00000476135	PRKAG3	Q9UGI9	489 aa		8.83	□□□□□ -1
HDAC9-223	ENST00000476135	FLT1	P17948	1338 aa		8.82	□□□□□ -1
HDAC9-223	ENST00000476135	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	8.82	□□□□□ -1
HDAC9-223	ENST00000476135	TTC24	A2A3L6	582 aa	Predicted RBP	8.82	□□□□□ -1
HDAC9-223	ENST00000476135	KIF28P	B7ZC32	967 aa		8.82	□□□□□ -1
HDAC9-223	ENST00000476135	ARHGEF15	O94989	841 aa		8.82	□□□□□ -1
HDAC9-223	ENST00000476135	BAG3	O95817	575 aa		8.82	□□□□□ -1
HDAC9-223	ENST00000476135	HLA-DOA	P06340	250 aa		8.82	□□□□□ -1
HDAC9-223	ENST00000476135	C6orf222	P0C671	652 aa	Predicted RBP	8.82	□□□□□ -1
HDAC9-223	ENST00000476135	KCNA5	P22460	613 aa		8.82	□□□□□ -1
HDAC9-223	ENST00000476135	ADORA1	P30542	326 aa		8.82	□□□□□ -1
HDAC9-223	ENST00000476135	GJA9	P57773	515 aa		8.82	□□□□□ -1
HDAC9-223	ENST00000476135	PLS1	Q14651	629 aa		8.82	□□□□□ -1
HDAC9-223	ENST00000476135	TTLL4	Q14679	1199 aa		8.82	□□□□□ -1
HDAC9-223	ENST00000476135	MAPKAPK5	Q8IW41	473 aa		8.82	□□□□□ -1
HDAC9-223	ENST00000476135	MMP19	Q99542	508 aa		8.82	□□□□□ -1
HDAC9-223	ENST00000476135	IRF2BPL	Q9H1B7	796 aa		8.82	□□□□□ -1
HDAC9-223	ENST00000476135	PALD1	Q9ULE6	856 aa		8.82	□□□□□ -1
HDAC9-223	ENST00000476135	C5orf42	Q9H799	3197 aa		8.81	□□□□□ -1
HDAC9-223	ENST00000476135	PGK2	P07205	417 aa		8.81	□□□□□ -1
HDAC9-223	ENST00000476135	ACTN1	P12814	892 aa		8.81	□□□□□ -1

Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms