RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 SYNE3Q6ZMZ3 975 aa16.54■□□□□ 0.24
VAMP4-203ENST00000474047 FBXO11Q86XK2 927 aa16.54■□□□□ 0.24
VAMP4-203ENST00000474047 ZNF654Q8IZM8 581 aa16.54■□□□□ 0.24
VAMP4-203ENST00000474047 LRRC2Q9BYS8 371 aa16.54■□□□□ 0.24
VAMP4-203ENST00000474047 JMJD4Q9H9V9 463 aa16.54■□□□□ 0.24
VAMP4-203ENST00000474047 ZHX1Q9UKY1 873 aaPredicted RBP16.54■□□□□ 0.24
VAMP4-203ENST00000474047 PALM3A6NDB9 673 aaPredicted RBP16.53■□□□□ 0.24
VAMP4-203ENST00000474047 ASB14A6NK59 587 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 NFIBO00712 420 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 SH2B2O14492 632 aaPredicted RBP16.53■□□□□ 0.24
VAMP4-203ENST00000474047 CALML3P27482 149 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 BAATQ14032 418 aaPredicted RBP16.53■□□□□ 0.24
VAMP4-203ENST00000474047 QRICH1Q2TAL8 776 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 MAMDC4Q6UXC1 1216 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 RNF207Q6ZRF8 634 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 RASEFQ8IZ41 740 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 FAM133AQ8N9E0 248 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 GPHNQ9NQX3 736 aaPredicted RBP16.53■□□□□ 0.24
VAMP4-203ENST00000474047 ADD3Q9UEY8 706 aaKnown RBP16.53■□□□□ 0.24
VAMP4-203ENST00000474047 SLC12A7Q9Y666 1083 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 ABCB11O95342 1321 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 DDAH1O94760 285 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 HMGB1P09429 215 aaKnown RBP16.53■□□□□ 0.24
VAMP4-203ENST00000474047 CALM1P0DP23 149 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 CALM2P0DP24 149 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 CALM3P0DP25 149 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 RARBP10826 455 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 TROAPQ12815 778 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 TSGA10IPQ3SY00 556 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 ARMCX2Q7L311 632 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 DHX32Q7L7V1 743 aaKnown RBP16.53■□□□□ 0.24
VAMP4-203ENST00000474047 ARRDC4Q8NCT1 418 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 DIS3LQ8TF46 1054 aaKnown RBP16.53■□□□□ 0.24
VAMP4-203ENST00000474047 MYL10Q9BUA6 226 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 AMNQ9BXJ7 453 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 C11orf49Q9H6J7 331 aa16.53■□□□□ 0.24
VAMP4-203ENST00000474047 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.53■□□□□ 0.24
VAMP4-203ENST00000474047 MRPL11Q9Y3B7 192 aaKnown RBP16.53■□□□□ 0.24
VAMP4-203ENST00000474047 SMCHD1A6NHR9 2005 aa16.52■□□□□ 0.24
VAMP4-203ENST00000474047 SNAI1O95863 264 aaPredicted RBP16.52■□□□□ 0.24
VAMP4-203ENST00000474047 AKR1A1P14550 325 aa16.52■□□□□ 0.24
VAMP4-203ENST00000474047 LIFRP42702 1097 aa16.52■□□□□ 0.24
VAMP4-203ENST00000474047 TRAF1Q13077 416 aa16.52■□□□□ 0.24
VAMP4-203ENST00000474047 HOMER1Q86YM7 354 aa16.52■□□□□ 0.24
VAMP4-203ENST00000474047 CCDC144CPQ8IYA2 1237 aa16.52■□□□□ 0.24
VAMP4-203ENST00000474047 CLEC4DQ8WXI8 215 aa16.52■□□□□ 0.24
VAMP4-203ENST00000474047 MPHOSPH6Q99547 160 aaKnown RBP16.52■□□□□ 0.24
VAMP4-203ENST00000474047 ABHD16BQ9H3Z7 469 aa16.52■□□□□ 0.24
VAMP4-203ENST00000474047 FAM184BQ9ULE4 1060 aa16.52■□□□□ 0.24
VAMP4-203ENST00000474047 MYH6P13533 1939 aa16.51■□□□□ 0.23
VAMP4-203ENST00000474047 SOWAHBA6NEL2 793 aa16.51■□□□□ 0.23
VAMP4-203ENST00000474047 ZBTB5O15062 677 aa16.51■□□□□ 0.23
VAMP4-203ENST00000474047 HSPA4P34932 840 aa16.51■□□□□ 0.23
VAMP4-203ENST00000474047 GNAQP50148 359 aa16.51■□□□□ 0.23
VAMP4-203ENST00000474047 ACVR2BQ13705 512 aa16.51■□□□□ 0.23
VAMP4-203ENST00000474047 ADCK5Q3MIX3 580 aa16.51■□□□□ 0.23
VAMP4-203ENST00000474047 UBE2Q1Q7Z7E8 422 aa16.51■□□□□ 0.23
VAMP4-203ENST00000474047 MCF2L2Q86YR7 1114 aa16.51■□□□□ 0.23
VAMP4-203ENST00000474047 MAP3K14Q99558 947 aa16.51■□□□□ 0.23
VAMP4-203ENST00000474047 PDE4DIPQ5VU43 2346 aa16.51■□□□□ 0.23
VAMP4-203ENST00000474047 B4DLN1 442 aa16.5■□□□□ 0.23
VAMP4-203ENST00000474047 KBTBD13C9JR72 458 aa16.5■□□□□ 0.23
VAMP4-203ENST00000474047 ZNF865P0CJ78 1059 aaPredicted RBP16.5■□□□□ 0.23
VAMP4-203ENST00000474047 MRPL12P52815 198 aaKnown RBP16.5■□□□□ 0.23
VAMP4-203ENST00000474047 PIBF1Q8WXW3 757 aa16.5■□□□□ 0.23
VAMP4-203ENST00000474047 TCEANC2Q96MN5 208 aa16.5■□□□□ 0.23
VAMP4-203ENST00000474047 JAKMIP1Q96N16 626 aaKnown RBP16.5■□□□□ 0.23
VAMP4-203ENST00000474047 LZTS2Q9BRK4 669 aa16.5■□□□□ 0.23
VAMP4-203ENST00000474047 NAP1L2Q9ULW6 460 aaPredicted RBP16.5■□□□□ 0.23
VAMP4-203ENST00000474047 RPS6P62753 249 aaKnown RBP16.5■□□□□ 0.23
VAMP4-203ENST00000474047 SLC30A10Q6XR72 485 aa16.5■□□□□ 0.23
VAMP4-203ENST00000474047 NOL8Q76FK4 1167 aaKnown RBP16.5■□□□□ 0.23
VAMP4-203ENST00000474047 FGD4Q96M96 766 aa16.5■□□□□ 0.23
VAMP4-203ENST00000474047 PURBQ96QR8 312 aaKnown RBP16.5■□□□□ 0.23
VAMP4-203ENST00000474047 PIGSQ96S52 555 aa16.5■□□□□ 0.23
VAMP4-203ENST00000474047 RIOX1Q9H6W3 641 aa16.5■□□□□ 0.23
VAMP4-203ENST00000474047 XPNPEP3Q9NQH7 507 aa16.5■□□□□ 0.23
VAMP4-203ENST00000474047 PCDHA1Q9Y5I3 950 aa16.5■□□□□ 0.23
VAMP4-203ENST00000474047 SNX14Q9Y5W7 946 aa16.5■□□□□ 0.23
VAMP4-203ENST00000474047 EVI5O60447 810 aa16.49■□□□□ 0.23
VAMP4-203ENST00000474047 RXRAP19793 462 aa16.49■□□□□ 0.23
VAMP4-203ENST00000474047 PSMA5P28066 241 aa16.49■□□□□ 0.23
VAMP4-203ENST00000474047 COL9A3Q14050 684 aaPredicted RBP16.49■□□□□ 0.23
VAMP4-203ENST00000474047 GJC2Q5T442 439 aaPredicted RBP16.49■□□□□ 0.23
VAMP4-203ENST00000474047 BLOC1S2Q6QNY1 142 aa16.49■□□□□ 0.23
VAMP4-203ENST00000474047 RAB11FIP4Q86YS3 637 aa16.49■□□□□ 0.23
VAMP4-203ENST00000474047 RGS22Q8NE09 1264 aa16.49■□□□□ 0.23
VAMP4-203ENST00000474047 RRP36Q96EU6 259 aaKnown RBP16.49■□□□□ 0.23
VAMP4-203ENST00000474047 SEC63Q9UGP8 760 aaKnown RBP16.49■□□□□ 0.23
VAMP4-203ENST00000474047 NR2E3Q9Y5X4 410 aa16.49■□□□□ 0.23
VAMP4-203ENST00000474047 PNMA6FA0A0J9YX94 578 aa16.48■□□□□ 0.23
VAMP4-203ENST00000474047 DNM1LO00429 736 aa16.48■□□□□ 0.23
VAMP4-203ENST00000474047 EPB41L2O43491 1005 aaKnown RBP16.48■□□□□ 0.23
VAMP4-203ENST00000474047 EXOSC10Q01780 885 aaKnown RBP16.48■□□□□ 0.23
VAMP4-203ENST00000474047 CCDC144BQ3MJ40 725 aa16.48■□□□□ 0.23
VAMP4-203ENST00000474047 EEPD1Q7L9B9 569 aa16.48■□□□□ 0.23
VAMP4-203ENST00000474047 RNF180Q86T96 592 aa16.48■□□□□ 0.23
VAMP4-203ENST00000474047 MICU3Q86XE3 530 aa16.48■□□□□ 0.23
VAMP4-203ENST00000474047 SENP6Q9GZR1 1112 aaPredicted RBP16.48■□□□□ 0.23
VAMP4-203ENST00000474047 SPC25Q9HBM1 224 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms