RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 TSPY3P0CV98 308 aa23.62■■□□□ 1.37
COL18A1-207ENST00000473212 TSPY8P0CW00 308 aa23.62■■□□□ 1.37
COL18A1-207ENST00000473212 PLCG1P19174 1290 aa23.62■■□□□ 1.37
COL18A1-207ENST00000473212 TM4SF1P30408 202 aa23.62■■□□□ 1.37
COL18A1-207ENST00000473212 KIAA1328Q86T90 577 aa23.62■■□□□ 1.37
COL18A1-207ENST00000473212 TMEM47Q9BQJ4 181 aa23.62■■□□□ 1.37
COL18A1-207ENST00000473212 CDCA7Q9BWT1 371 aaPredicted RBP23.62■■□□□ 1.37
COL18A1-207ENST00000473212 COL5A3P25940 1745 aaPredicted RBP23.62■■□□□ 1.37
COL18A1-207ENST00000473212 STIM1Q13586 685 aa23.62■■□□□ 1.37
COL18A1-207ENST00000473212 KCNB1Q14721 858 aa23.62■■□□□ 1.37
COL18A1-207ENST00000473212 NFIXQ14938 502 aa23.62■■□□□ 1.37
COL18A1-207ENST00000473212 TXNRD1Q16881 649 aa23.62■■□□□ 1.37
COL18A1-207ENST00000473212 FAM182BQ5T319 152 aa23.62■■□□□ 1.37
COL18A1-207ENST00000473212 TTI2Q6NXR4 508 aa23.62■■□□□ 1.37
COL18A1-207ENST00000473212 SETDB2Q96T68 719 aa23.62■■□□□ 1.37
COL18A1-207ENST00000473212 TSPYL1Q9H0U9 437 aa23.62■■□□□ 1.37
COL18A1-207ENST00000473212 DUSP10Q9Y6W6 482 aa23.62■■□□□ 1.37
COL18A1-207ENST00000473212 PSMA7O14818 248 aa23.61■■□□□ 1.37
COL18A1-207ENST00000473212 ERCC3P19447 782 aa23.61■■□□□ 1.37
COL18A1-207ENST00000473212 STK4Q13043 487 aa23.61■■□□□ 1.37
COL18A1-207ENST00000473212 FAM98CQ17RN3 349 aaKnown RBP23.61■■□□□ 1.37
COL18A1-207ENST00000473212 LETM2Q2VYF4 491 aa23.61■■□□□ 1.37
COL18A1-207ENST00000473212 JAKMIP2Q96AA8 810 aa23.61■■□□□ 1.37
COL18A1-207ENST00000473212 ACBD3Q9H3P7 528 aa23.61■■□□□ 1.37
COL18A1-207ENST00000473212 KBTBD4Q9NVX7 518 aa23.61■■□□□ 1.37
COL18A1-207ENST00000473212 FLT1P17948 1338 aa23.61■■□□□ 1.37
COL18A1-207ENST00000473212 TNNT3P45378 269 aaPredicted RBP23.61■■□□□ 1.37
COL18A1-207ENST00000473212 CCDC178Q5BJE1 867 aa23.61■■□□□ 1.37
COL18A1-207ENST00000473212 PAPD7Q5XG87 772 aaKnown RBP23.61■■□□□ 1.37
COL18A1-207ENST00000473212 DGKHQ86XP1 1220 aa23.61■■□□□ 1.37
COL18A1-207ENST00000473212 LACRTQ9GZZ8 138 aa23.61■■□□□ 1.37
COL18A1-207ENST00000473212 VAT1LQ9HCJ6 419 aa23.61■■□□□ 1.37
COL18A1-207ENST00000473212 SPATA31A5Q5VU36 1347 aa23.6■■□□□ 1.37
COL18A1-207ENST00000473212 SPATA31A7Q8IWB4 1347 aa23.6■■□□□ 1.37
COL18A1-207ENST00000473212 IRS2Q9Y4H2 1338 aa23.6■■□□□ 1.37
COL18A1-207ENST00000473212 MYO1CO00159 1063 aa23.6■■□□□ 1.37
COL18A1-207ENST00000473212 DNM2P50570 870 aa23.6■■□□□ 1.37
COL18A1-207ENST00000473212 KRT83P78385 493 aa23.6■■□□□ 1.37
COL18A1-207ENST00000473212 GIMAP8Q8ND71 665 aaPredicted RBP23.6■■□□□ 1.37
COL18A1-207ENST00000473212 TUBGCP2Q9BSJ2 902 aa23.6■■□□□ 1.37
COL18A1-207ENST00000473212 TRIM66O15016 1216 aa23.6■■□□□ 1.37
COL18A1-207ENST00000473212 RHOBTB3O94955 611 aa23.6■■□□□ 1.37
COL18A1-207ENST00000473212 TRIM21P19474 475 aaKnown RBP23.6■■□□□ 1.37
COL18A1-207ENST00000473212 FOXR1Q6PIV2 292 aa23.6■■□□□ 1.37
COL18A1-207ENST00000473212 HINFPQ9BQA5 517 aa23.6■■□□□ 1.37
COL18A1-207ENST00000473212 MED4Q9NPJ6 270 aa23.6■■□□□ 1.37
COL18A1-207ENST00000473212 BARHL2Q9NY43 387 aa23.6■■□□□ 1.37
COL18A1-207ENST00000473212 CCDC88AQ3V6T2 1871 aa23.6■■□□□ 1.37
COL18A1-207ENST00000473212 KRT86O43790 486 aa23.59■■□□□ 1.37
COL18A1-207ENST00000473212 ZMYND10O75800 440 aa23.59■■□□□ 1.37
COL18A1-207ENST00000473212 SRGNP10124 158 aa23.59■■□□□ 1.37
COL18A1-207ENST00000473212 CYP27A1Q02318 531 aa23.59■■□□□ 1.37
COL18A1-207ENST00000473212 MEA1Q16626 185 aa23.59■■□□□ 1.37
COL18A1-207ENST00000473212 ANKRD40Q6AI12 368 aa23.59■■□□□ 1.37
COL18A1-207ENST00000473212 USP17L2Q6R6M4 530 aa23.59■■□□□ 1.37
COL18A1-207ENST00000473212 CSGALNACT2Q8N6G5 542 aa23.59■■□□□ 1.37
COL18A1-207ENST00000473212 SMARCC1Q92922 1105 aaPredicted RBP23.59■■□□□ 1.37
COL18A1-207ENST00000473212 FAM204AQ9H8W3 233 aa23.59■■□□□ 1.37
COL18A1-207ENST00000473212 EXOC1Q9NV70 894 aa23.59■■□□□ 1.37
COL18A1-207ENST00000473212 ANKIB1Q9P2G1 1089 aa23.59■■□□□ 1.37
COL18A1-207ENST00000473212 CCNT1O60563 726 aaKnown RBP23.59■■□□□ 1.37
COL18A1-207ENST00000473212 LDHBP07195 334 aaKnown RBP23.59■■□□□ 1.37
COL18A1-207ENST00000473212 RASA1P20936 1047 aa23.59■■□□□ 1.37
COL18A1-207ENST00000473212 SLC20A2Q08357 652 aa23.59■■□□□ 1.37
COL18A1-207ENST00000473212 C10orf67Q8IYJ2 551 aa23.59■■□□□ 1.37
COL18A1-207ENST00000473212 GDAP1L1Q96MZ0 367 aa23.59■■□□□ 1.37
COL18A1-207ENST00000473212 NHEJ1Q9H9Q4 299 aaPredicted RBP23.59■■□□□ 1.37
COL18A1-207ENST00000473212 SH3GLB2Q9NR46 395 aa23.59■■□□□ 1.37
COL18A1-207ENST00000473212 GNPATO15228 680 aa23.58■■□□□ 1.37
COL18A1-207ENST00000473212 SRLQ86TD4 932 aa23.58■■□□□ 1.37
COL18A1-207ENST00000473212 TTYH3Q9C0H2 523 aa23.58■■□□□ 1.37
COL18A1-207ENST00000473212 THRAP3Q9Y2W1 955 aaKnown RBP23.58■■□□□ 1.37
COL18A1-207ENST00000473212 KLRF2D3W0D1 207 aa23.58■■□□□ 1.36
COL18A1-207ENST00000473212 CYLC1P35663 651 aaPredicted RBP23.58■■□□□ 1.36
COL18A1-207ENST00000473212 TECP42680 631 aa23.58■■□□□ 1.36
COL18A1-207ENST00000473212 CABP7Q86V35 215 aa23.58■■□□□ 1.36
COL18A1-207ENST00000473212 RRP15Q9Y3B9 282 aaKnown RBP23.58■■□□□ 1.36
COL18A1-207ENST00000473212 ZNF185O15231 689 aa23.57■■□□□ 1.36
COL18A1-207ENST00000473212 RNF40O75150 1001 aa23.57■■□□□ 1.36
COL18A1-207ENST00000473212 SYF2O95926 243 aaKnown RBP23.57■■□□□ 1.36
COL18A1-207ENST00000473212 IVLP07476 585 aa23.57■■□□□ 1.36
COL18A1-207ENST00000473212 PLEKP08567 350 aaPredicted RBP23.57■■□□□ 1.36
COL18A1-207ENST00000473212 PDE4DQ08499 809 aa23.57■■□□□ 1.36
COL18A1-207ENST00000473212 TBC1D8BQ0IIM8 1120 aa23.57■■□□□ 1.36
COL18A1-207ENST00000473212 PCMTD1Q96MG8 357 aaPredicted RBP23.57■■□□□ 1.36
COL18A1-207ENST00000473212 ANKRD2Q9GZV1 360 aa23.57■■□□□ 1.36
COL18A1-207ENST00000473212 VIPAS39Q9H9C1 493 aa23.57■■□□□ 1.36
COL18A1-207ENST00000473212 ZNHIT6Q9NWK9 470 aaKnown RBP23.57■■□□□ 1.36
COL18A1-207ENST00000473212 PALM3A6NDB9 673 aaPredicted RBP23.57■■□□□ 1.36
COL18A1-207ENST00000473212 NAPAP54920 295 aa23.57■■□□□ 1.36
COL18A1-207ENST00000473212 ZNF444Q8N0Y2 327 aaPredicted RBP23.57■■□□□ 1.36
COL18A1-207ENST00000473212 EHBP1Q8NDI1 1231 aa23.57■■□□□ 1.36
COL18A1-207ENST00000473212 CCSER1Q9C0I3 900 aa23.57■■□□□ 1.36
COL18A1-207ENST00000473212 TMEM260Q9NX78 707 aa23.57■■□□□ 1.36
COL18A1-207ENST00000473212 CAGE1Q8TC20 777 aa23.56■■□□□ 1.36
COL18A1-207ENST00000473212 TRIM34Q9BYJ4 488 aa23.56■■□□□ 1.36
COL18A1-207ENST00000473212 TRIM9Q9C026 710 aa23.56■■□□□ 1.36
COL18A1-207ENST00000473212 NARFQ9UHQ1 456 aa23.56■■□□□ 1.36
COL18A1-207ENST00000473212 HPCAL4Q9UM19 191 aa23.56■■□□□ 1.36
COL18A1-207ENST00000473212 NRAPQ86VF7 1730 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms