RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 FPGSQ05932 587 aa23.29■■□□□ 1.32
COL9A3-210ENST00000472880 FAAP100Q0VG06 881 aa23.29■■□□□ 1.32
COL9A3-210ENST00000472880 GNASQ5JWF2 1037 aa23.29■■□□□ 1.32
COL9A3-210ENST00000472880 NSMFQ6X4W1 530 aa23.29■■□□□ 1.32
COL9A3-210ENST00000472880 FAM161BQ96MY7 647 aa23.29■■□□□ 1.32
COL9A3-210ENST00000472880 TMEM47Q9BQJ4 181 aa23.29■■□□□ 1.32
COL9A3-210ENST00000472880 RANBP17Q9H2T7 1088 aaKnown RBP23.29■■□□□ 1.32
COL9A3-210ENST00000472880 CYP39A1Q9NYL5 469 aa23.29■■□□□ 1.32
COL9A3-210ENST00000472880 COL6A3P12111 3177 aa23.29■■□□□ 1.32
COL9A3-210ENST00000472880 PCP11498 1178 aaKnown RBP23.28■■□□□ 1.32
COL9A3-210ENST00000472880 SLC16A2P36021 539 aa23.28■■□□□ 1.32
COL9A3-210ENST00000472880 SYDE2Q5VT97 1194 aa23.28■■□□□ 1.32
COL9A3-210ENST00000472880 RNPC3Q96LT9 517 aaKnown RBP23.28■■□□□ 1.32
COL9A3-210ENST00000472880 TCP11L1Q9NUJ3 509 aa23.28■■□□□ 1.32
COL9A3-210ENST00000472880 FRMPD2Q68DX3 1309 aaPredicted RBP23.28■■□□□ 1.32
COL9A3-210ENST00000472880 A0A0U1RQG5 324 aaPredicted RBP23.27■■□□□ 1.32
COL9A3-210ENST00000472880 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.27■■□□□ 1.32
COL9A3-210ENST00000472880 AKNAD1Q5T1N1 836 aa23.27■■□□□ 1.32
COL9A3-210ENST00000472880 TTBK2Q6IQ55 1244 aa23.27■■□□□ 1.32
COL9A3-210ENST00000472880 BTNL9Q6UXG8 535 aa23.27■■□□□ 1.32
COL9A3-210ENST00000472880 MFSD6Q6ZSS7 791 aa23.27■■□□□ 1.32
COL9A3-210ENST00000472880 TLK2Q86UE8 772 aa23.27■■□□□ 1.32
COL9A3-210ENST00000472880 CHD1LQ86WJ1 897 aa23.27■■□□□ 1.32
COL9A3-210ENST00000472880 GUCD1Q96NT3 240 aa23.27■■□□□ 1.32
COL9A3-210ENST00000472880 GPCPD1Q9NPB8 672 aa23.27■■□□□ 1.32
COL9A3-210ENST00000472880 SMAD3P84022 425 aaKnown RBP23.26■■□□□ 1.31
COL9A3-210ENST00000472880 RNF41Q9H4P4 317 aaPredicted RBP23.26■■□□□ 1.31
COL9A3-210ENST00000472880 TBX21Q9UL17 535 aa23.26■■□□□ 1.31
COL9A3-210ENST00000472880 ASTN1O14525 1302 aa23.26■■□□□ 1.31
COL9A3-210ENST00000472880 LCTP09848 1927 aa23.25■■□□□ 1.31
COL9A3-210ENST00000472880 ARVCFO00192 962 aa23.25■■□□□ 1.31
COL9A3-210ENST00000472880 SDSP20132 328 aa23.25■■□□□ 1.31
COL9A3-210ENST00000472880 EPHB4P54760 987 aa23.25■■□□□ 1.31
COL9A3-210ENST00000472880 BEX3Q00994 111 aa23.25■■□□□ 1.31
COL9A3-210ENST00000472880 TBC1D10CQ8IV04 446 aa23.25■■□□□ 1.31
COL9A3-210ENST00000472880 FBXO16Q8IX29 292 aaPredicted RBP23.25■■□□□ 1.31
COL9A3-210ENST00000472880 AP5M1Q9H0R1 490 aa23.25■■□□□ 1.31
COL9A3-210ENST00000472880 LAMA4Q16363 1823 aa23.24■■□□□ 1.31
COL9A3-210ENST00000472880 CTAGE5O15320 804 aa23.24■■□□□ 1.31
COL9A3-210ENST00000472880 TLR3O15455 904 aaKnown RBP23.24■■□□□ 1.31
COL9A3-210ENST00000472880 TIMP1P01033 207 aa23.24■■□□□ 1.31
COL9A3-210ENST00000472880 PDHBP11177 359 aa23.24■■□□□ 1.31
COL9A3-210ENST00000472880 CDK7P50613 346 aa23.24■■□□□ 1.31
COL9A3-210ENST00000472880 NKX3-2P78367 333 aa23.24■■□□□ 1.31
COL9A3-210ENST00000472880 NUCB1Q02818 461 aa23.24■■□□□ 1.31
COL9A3-210ENST00000472880 EEPD1Q7L9B9 569 aa23.24■■□□□ 1.31
COL9A3-210ENST00000472880 PLEKHM2Q8IWE5 1019 aa23.24■■□□□ 1.31
COL9A3-210ENST00000472880 TTC14Q96N46 770 aa23.24■■□□□ 1.31
COL9A3-210ENST00000472880 OSBPL3Q9H4L5 887 aa23.24■■□□□ 1.31
COL9A3-210ENST00000472880 DIAPH3Q9NSV4 1193 aa23.24■■□□□ 1.31
COL9A3-210ENST00000472880 GNEQ9Y223 722 aaKnown RBP23.24■■□□□ 1.31
COL9A3-210ENST00000472880 DDX49Q9Y6V7 483 aaKnown RBP23.24■■□□□ 1.31
COL9A3-210ENST00000472880 FSCN1Q16658 493 aaKnown RBP23.23■■□□□ 1.31
COL9A3-210ENST00000472880 ESR2Q92731 530 aa23.23■■□□□ 1.31
COL9A3-210ENST00000472880 VTA1Q9NP79 307 aa23.23■■□□□ 1.31
COL9A3-210ENST00000472880 ADD3Q9UEY8 706 aaKnown RBP23.23■■□□□ 1.31
COL9A3-210ENST00000472880 PNMA2Q9UL42 364 aa23.23■■□□□ 1.31
COL9A3-210ENST00000472880 NEDD4P46934 1319 aa23.23■■□□□ 1.31
COL9A3-210ENST00000472880 PTPDC1A2A3K4 754 aa23.22■■□□□ 1.31
COL9A3-210ENST00000472880 DLL1O00548 723 aa23.22■■□□□ 1.31
COL9A3-210ENST00000472880 NFIBO00712 420 aa23.22■■□□□ 1.31
COL9A3-210ENST00000472880 ZNF213O14771 459 aa23.22■■□□□ 1.31
COL9A3-210ENST00000472880 ZEB2O60315 1214 aa23.22■■□□□ 1.31
COL9A3-210ENST00000472880 IGHDP01880 384 aa23.22■■□□□ 1.31
COL9A3-210ENST00000472880 SMPD1P17405 629 aa23.22■■□□□ 1.31
COL9A3-210ENST00000472880 ZNF543Q08ER8 600 aa23.22■■□□□ 1.31
COL9A3-210ENST00000472880 BAATQ14032 418 aaPredicted RBP23.22■■□□□ 1.31
COL9A3-210ENST00000472880 IQSEC1Q6DN90 963 aa23.22■■□□□ 1.31
COL9A3-210ENST00000472880 FAM126BQ8IXS8 530 aa23.22■■□□□ 1.31
COL9A3-210ENST00000472880 PURBQ96QR8 312 aaKnown RBP23.22■■□□□ 1.31
COL9A3-210ENST00000472880 PDGFCQ9NRA1 345 aa23.22■■□□□ 1.31
COL9A3-210ENST00000472880 LAMA2P24043 3122 aaKnown RBP23.21■■□□□ 1.31
COL9A3-210ENST00000472880 DYNC1LI2O43237 492 aaPredicted RBP23.21■■□□□ 1.31
COL9A3-210ENST00000472880 CABYRO75952 493 aa23.21■■□□□ 1.31
COL9A3-210ENST00000472880 ALDH5A1P51649 535 aaPredicted RBP23.21■■□□□ 1.31
COL9A3-210ENST00000472880 MFSD5Q6N075 450 aa23.21■■□□□ 1.31
COL9A3-210ENST00000472880 TAPT1Q6NXT6 567 aa23.21■■□□□ 1.31
COL9A3-210ENST00000472880 CWC27Q6UX04 472 aaKnown RBP23.21■■□□□ 1.31
COL9A3-210ENST00000472880 CXCL17Q6UXB2 119 aa23.21■■□□□ 1.31
COL9A3-210ENST00000472880 EXOC6Q8TAG9 804 aa23.21■■□□□ 1.31
COL9A3-210ENST00000472880 LOC102724159A0A0B4J2E5 919 aa23.2■■□□□ 1.3
COL9A3-210ENST00000472880 HIP1O00291 1037 aa23.2■■□□□ 1.3
COL9A3-210ENST00000472880 NT5C2P49902 561 aa23.2■■□□□ 1.3
COL9A3-210ENST00000472880 PPIGQ13427 754 aaKnown RBP eCLIP23.2■■□□□ 1.38e-33■■■□□ 14.8
COL9A3-210ENST00000472880 PWP2Q15269 919 aaKnown RBP23.2■■□□□ 1.3
COL9A3-210ENST00000472880 KIAA1211Q6ZU35 1233 aa23.2■■□□□ 1.3
COL9A3-210ENST00000472880 MORC4Q8TE76 937 aa23.2■■□□□ 1.3
COL9A3-210ENST00000472880 ZKSCAN3Q9BRR0 538 aa23.2■■□□□ 1.3
COL9A3-210ENST00000472880 SEMA6BQ9H3T3 888 aa23.2■■□□□ 1.3
COL9A3-210ENST00000472880 Q9Y3F1 56 aa23.2■■□□□ 1.3
COL9A3-210ENST00000472880 WDR19Q8NEZ3 1342 aa23.19■■□□□ 1.3
COL9A3-210ENST00000472880 SNHG28P0DPA3 235 aa23.19■■□□□ 1.3
COL9A3-210ENST00000472880 PTGS1P23219 599 aa23.19■■□□□ 1.3
COL9A3-210ENST00000472880 GPATCH4Q5T3I0 446 aaKnown RBP23.19■■□□□ 1.3
COL9A3-210ENST00000472880 SLC30A10Q6XR72 485 aa23.19■■□□□ 1.3
COL9A3-210ENST00000472880 IQCA1Q86XH1 822 aa23.19■■□□□ 1.3
COL9A3-210ENST00000472880 TMEM199Q8N511 208 aa23.19■■□□□ 1.3
COL9A3-210ENST00000472880 CDX2Q99626 313 aaPredicted RBP23.19■■□□□ 1.3
COL9A3-210ENST00000472880 PPP1R12CQ9BZL4 782 aa23.19■■□□□ 1.3
COL9A3-210ENST00000472880 TMEM265A0A087WTH1 108 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms