RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 LRRN4CLQ8ND94 238 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 NEDD1Q8NHV4 660 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 KIAA1024Q9UPX6 916 aa15.42■□□□□ 0.06
CCDC88A-211ENST00000471947 COL4A1P02462 1669 aa15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 SIPA1L3O60292 1781 aaPredicted RBP15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 TRAF5O00463 557 aa15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 ECE1P42892 770 aa15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 ABCB5Q2M3G0 1257 aa15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 BARHL2Q9NY43 387 aa15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 STXBP3O00186 592 aa15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 ENC1O14682 589 aa15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 SLC37A4O43826 429 aa15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 HERC4Q5GLZ8 1057 aaPredicted RBP15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 CAGE1Q8TC20 777 aa15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 NUP98P52948 1817 aa15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 E9PMD0 336 aa15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 KLK7P49862 253 aa15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 CHMP4BP1P59074 171 aa15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 ATP2C1P98194 919 aaPredicted RBP15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 SP8Q8IXZ3 490 aa15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 TIGD1Q96MW7 591 aa15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 PCDHA12Q9UN75 941 aa15.41■□□□□ 0.06
CCDC88A-211ENST00000471947 DOT1LQ8TEK3 1739 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 RHOXF2BP0C7M4 288 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 DGKZQ13574 1117 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 SV2BQ7L1I2 683 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 KRT25Q7Z3Z0 450 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 NUDT12Q9BQG2 462 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 RHOXF2Q9BQY4 288 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 DISC1Q9NRI5 854 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 SEPT11Q9NVA2 429 aaKnown RBP15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 DDX25Q9UHL0 483 aaKnown RBP15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 TUBE1Q9UJT0 475 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 PKD1L3Q7Z443 1732 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 CYP27A1Q02318 531 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 KRT31Q15323 416 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 CACNA2D4Q7Z3S7 1137 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 NOC4LQ9BVI4 516 aaKnown RBP15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 PHLPP1O60346 1717 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 PSDA5PKW4 1024 aaPredicted RBP15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 RRP9O43818 475 aaKnown RBP15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 MRPL12P52815 198 aaKnown RBP15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 SBK1Q52WX2 424 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 WDR78Q5VTH9 848 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 SPATA1Q5VX52 437 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 VSTM4Q8IW00 320 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 FBXO28Q9NVF7 368 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 PPP2R2CQ9Y2T4 447 aa15.4■□□□□ 0.06
CCDC88A-211ENST00000471947 PMS1P54277 932 aaKnown RBP15.39■□□□□ 0.05
CCDC88A-211ENST00000471947 STK4Q13043 487 aa15.39■□□□□ 0.05
CCDC88A-211ENST00000471947 QRICH1Q2TAL8 776 aa15.39■□□□□ 0.05
CCDC88A-211ENST00000471947 SMCR8Q8TEV9 937 aaPredicted RBP15.39■□□□□ 0.05
CCDC88A-211ENST00000471947 XIRP1Q702N8 1843 aaKnown RBP15.39■□□□□ 0.05
CCDC88A-211ENST00000471947 FBXL16Q8N461 479 aa15.39■□□□□ 0.05
CCDC88A-211ENST00000471947 TMEM39BQ9GZU3 492 aa15.39■□□□□ 0.05
CCDC88A-211ENST00000471947 OSBPL5Q9H0X9 879 aaPredicted RBP15.39■□□□□ 0.05
CCDC88A-211ENST00000471947 ITGB4P16144 1822 aa15.39■□□□□ 0.05
CCDC88A-211ENST00000471947 ZSCAN12O43309 604 aa15.39■□□□□ 0.05
CCDC88A-211ENST00000471947 ADRA2BP18089 450 aa15.39■□□□□ 0.05
CCDC88A-211ENST00000471947 FAM193AP78312 1265 aa15.39■□□□□ 0.05
CCDC88A-211ENST00000471947 CDC37Q16543 378 aaPredicted RBP15.39■□□□□ 0.05
CCDC88A-211ENST00000471947 C16orf86Q6ZW13 317 aa15.39■□□□□ 0.05
CCDC88A-211ENST00000471947 CCDC155Q8N6L0 562 aa15.39■□□□□ 0.05
CCDC88A-211ENST00000471947 GLIS3Q8NEA6 775 aa15.39■□□□□ 0.05
CCDC88A-211ENST00000471947 TBC1D5Q92609 795 aa15.39■□□□□ 0.05
CCDC88A-211ENST00000471947 F5H6K3 240 aa15.38■□□□□ 0.05
CCDC88A-211ENST00000471947 GTPBP6O43824 516 aaPredicted RBP15.38■□□□□ 0.05
CCDC88A-211ENST00000471947 KLRC3Q07444 240 aa15.38■□□□□ 0.05
CCDC88A-211ENST00000471947 SARM1Q6SZW1 724 aa15.38■□□□□ 0.05
CCDC88A-211ENST00000471947 TPH2Q8IWU9 490 aa15.38■□□□□ 0.05
CCDC88A-211ENST00000471947 ACER1Q8TDN7 264 aa15.38■□□□□ 0.05
CCDC88A-211ENST00000471947 PIGOQ8TEQ8 1089 aa15.38■□□□□ 0.05
CCDC88A-211ENST00000471947 ZNHIT6Q9NWK9 470 aaKnown RBP15.38■□□□□ 0.05
CCDC88A-211ENST00000471947 SHTN1A0MZ66 631 aa15.38■□□□□ 0.05
CCDC88A-211ENST00000471947 DCAF17Q5H9S7 520 aaPredicted RBP15.38■□□□□ 0.05
CCDC88A-211ENST00000471947 CUL5Q93034 780 aa15.38■□□□□ 0.05
CCDC88A-211ENST00000471947 POTEB3A0JP26 581 aa15.38■□□□□ 0.05
CCDC88A-211ENST00000471947 ERICH4A6NGS2 130 aa15.38■□□□□ 0.05
CCDC88A-211ENST00000471947 POTECB2RU33 542 aa15.38■□□□□ 0.05
CCDC88A-211ENST00000471947 POTEBQ6S5H4 581 aa15.38■□□□□ 0.05
CCDC88A-211ENST00000471947 RAB34Q9BZG1 259 aa15.38■□□□□ 0.05
CCDC88A-211ENST00000471947 TRIM10Q9UDY6 481 aa15.38■□□□□ 0.05
CCDC88A-211ENST00000471947 IKBKBO14920 756 aa15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 KIF5CO60282 957 aa15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 FXR1P51114 621 aaKnown RBP eCLIP15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 SYCP1Q15431 976 aa15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 NPY5RQ15761 445 aa15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 SLC27A3Q5K4L6 730 aa15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 NSMFQ6X4W1 530 aa15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 CYP2W1Q8TAV3 490 aa15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 JMJD4Q9H9V9 463 aa15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 ZHX1Q9UKY1 873 aaPredicted RBP15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 PLEKHG2Q9H7P9 1386 aa15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 LRP6O75581 1613 aa15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 SLU7O95391 586 aaKnown RBP15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 MYCLP12524 364 aaPredicted RBP15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 COPB1P53618 953 aaKnown RBP15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 FAM83BQ5T0W9 1011 aa15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 WDR24Q96S15 920 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms