RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 RRP36Q96EU6 259 aaKnown RBP11.42□□□□□ -0.58
SF3A1-207ENST00000471342 TMEM260Q9NX78 707 aa11.42□□□□□ -0.58
SF3A1-207ENST00000471342 RABGAP1Q9Y3P9 1069 aa11.42□□□□□ -0.58
SF3A1-207ENST00000471342 PIK3CDO00329 1044 aa11.41□□□□□ -0.58
SF3A1-207ENST00000471342 CA12O43570 354 aa11.41□□□□□ -0.58
SF3A1-207ENST00000471342 STX6O43752 255 aa11.41□□□□□ -0.58
SF3A1-207ENST00000471342 TLR2O60603 784 aa11.41□□□□□ -0.58
SF3A1-207ENST00000471342 CDKL5O76039 1030 aa11.41□□□□□ -0.58
SF3A1-207ENST00000471342 FDX1P10109 184 aa11.41□□□□□ -0.58
SF3A1-207ENST00000471342 MAP2K2P36507 400 aa11.41□□□□□ -0.58
SF3A1-207ENST00000471342 CRHR2Q13324 411 aa11.41□□□□□ -0.58
SF3A1-207ENST00000471342 LARP1BQ659C4 914 aaKnown RBP11.41□□□□□ -0.58
SF3A1-207ENST00000471342 USP6NLQ92738 828 aa11.41□□□□□ -0.58
SF3A1-207ENST00000471342 AMNQ9BXJ7 453 aa11.41□□□□□ -0.58
SF3A1-207ENST00000471342 SPATC1LQ9H0A9 340 aa11.41□□□□□ -0.58
SF3A1-207ENST00000471342 RIC8AQ9NPQ8 531 aa11.41□□□□□ -0.58
SF3A1-207ENST00000471342 RNF186Q9NXI6 227 aa11.41□□□□□ -0.58
SF3A1-207ENST00000471342 PCDHA1Q9Y5I3 950 aa11.41□□□□□ -0.58
SF3A1-207ENST00000471342 HTTP42858 3142 aa11.41□□□□□ -0.58
SF3A1-207ENST00000471342 FRMPD4Q14CM0 1322 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 RPTORQ8N122 1335 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 STAT3P40763 770 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 FOSBP53539 338 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 ERVK-9P63128 1117 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 ERVK-24P63145 666 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 UBE2SQ16763 222 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 IFFO2Q5TF58 517 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 PPP1R18Q6NYC8 613 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 USP17L6PQ6QN14 398 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 CLEC17AQ6ZS10 378 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 HEATR3Q7Z4Q2 680 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 CPXCR1Q8N123 301 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 FAM177A1Q8N128 213 aaPredicted RBP11.4□□□□□ -0.58
SF3A1-207ENST00000471342 MB21D1Q8N884 522 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 C4orf32Q8N8J7 132 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 SYTL5Q8TDW5 730 aaPredicted RBP11.4□□□□□ -0.58
SF3A1-207ENST00000471342 EFCC1Q9HA90 598 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 A1CFQ9NQ94 594 aaKnown RBP11.4□□□□□ -0.58
SF3A1-207ENST00000471342 CPA4Q9UI42 421 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 GJD2Q9UKL4 321 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 PCDHA4Q9UN74 947 aa11.4□□□□□ -0.58
SF3A1-207ENST00000471342 DDX49Q9Y6V7 483 aaKnown RBP11.4□□□□□ -0.58
SF3A1-207ENST00000471342 SOWAHBA6NEL2 793 aa11.39□□□□□ -0.59
SF3A1-207ENST00000471342 SMCO2A6NFE2 343 aa11.39□□□□□ -0.59
SF3A1-207ENST00000471342 hCG_1984214I3L0E3 225 aa11.39□□□□□ -0.59
SF3A1-207ENST00000471342 ZSCAN22P10073 491 aaPredicted RBP11.39□□□□□ -0.59
SF3A1-207ENST00000471342 OSBPP22059 807 aa11.39□□□□□ -0.59
SF3A1-207ENST00000471342 USH1GQ495M9 461 aa11.39□□□□□ -0.59
SF3A1-207ENST00000471342 SLC30A10Q6XR72 485 aa11.39□□□□□ -0.59
SF3A1-207ENST00000471342 DIS3L2Q8IYB7 885 aaKnown RBP11.39□□□□□ -0.59
SF3A1-207ENST00000471342 TRIM22Q8IYM9 498 aa11.39□□□□□ -0.59
SF3A1-207ENST00000471342 BLIDQ8IZY5 108 aa11.39□□□□□ -0.59
SF3A1-207ENST00000471342 ANKRD13CQ8N6S4 541 aa11.39□□□□□ -0.59
SF3A1-207ENST00000471342 ZNF713Q8N859 430 aaPredicted RBP11.39□□□□□ -0.59
SF3A1-207ENST00000471342 C8orf76Q96K31 380 aa11.39□□□□□ -0.59
SF3A1-207ENST00000471342 MBOAT7Q96N66 472 aa11.39□□□□□ -0.59
SF3A1-207ENST00000471342 TEX13BQ9BXU2 312 aa11.39□□□□□ -0.59
SF3A1-207ENST00000471342 RBM27Q9P2N5 1060 aaKnown RBP11.39□□□□□ -0.59
SF3A1-207ENST00000471342 CIZ1Q9ULV3 898 aaPredicted RBP11.39□□□□□ -0.59
SF3A1-207ENST00000471342 COL11A1P12107 1806 aaPredicted RBP11.39□□□□□ -0.59
SF3A1-207ENST00000471342 LCTP09848 1927 aa11.39□□□□□ -0.59
SF3A1-207ENST00000471342 ABCB11O95342 1321 aa11.38□□□□□ -0.59
SF3A1-207ENST00000471342 COBLO75128 1261 aa11.38□□□□□ -0.59
SF3A1-207ENST00000471342 ZBED4O75132 1171 aa11.38□□□□□ -0.59
SF3A1-207ENST00000471342 F13A1P00488 732 aa11.38□□□□□ -0.59
SF3A1-207ENST00000471342 ERCC3P19447 782 aa11.38□□□□□ -0.59
SF3A1-207ENST00000471342 RPS6P62753 249 aaKnown RBP11.38□□□□□ -0.59
SF3A1-207ENST00000471342 IRX3P78415 501 aaPredicted RBP11.38□□□□□ -0.59
SF3A1-207ENST00000471342 FAM110CQ1W6H9 321 aa11.38□□□□□ -0.59
SF3A1-207ENST00000471342 SNRNP48Q6IEG0 339 aaKnown RBP11.38□□□□□ -0.59
SF3A1-207ENST00000471342 CPLX2Q6PUV4 134 aaKnown RBP11.38□□□□□ -0.59
SF3A1-207ENST00000471342 FAM133AQ8N9E0 248 aa11.38□□□□□ -0.59
SF3A1-207ENST00000471342 SHCBP1Q8NEM2 672 aa11.38□□□□□ -0.59
SF3A1-207ENST00000471342 IL31RAQ8NI17 732 aa11.38□□□□□ -0.59
SF3A1-207ENST00000471342 LENG9Q96B70 501 aa11.38□□□□□ -0.59
SF3A1-207ENST00000471342 PGBD1Q96JS3 809 aa11.38□□□□□ -0.59
SF3A1-207ENST00000471342 TRERF1Q96PN7 1200 aa11.38□□□□□ -0.59
SF3A1-207ENST00000471342 FTOQ9C0B1 505 aaKnown RBP eCLIP11.38□□□□□ -0.59
SF3A1-207ENST00000471342 ARHGAP39Q9C0H5 1083 aa11.38□□□□□ -0.59
SF3A1-207ENST00000471342 FOXP1Q9H334 677 aaPredicted RBP11.38□□□□□ -0.59
SF3A1-207ENST00000471342 RNF146Q9NTX7 359 aa11.38□□□□□ -0.59
SF3A1-207ENST00000471342 CYP39A1Q9NYL5 469 aa11.38□□□□□ -0.59
SF3A1-207ENST00000471342 CCPG1Q9ULG6 757 aa11.38□□□□□ -0.59
SF3A1-207ENST00000471342 POTEFA5A3E0 1075 aa11.37□□□□□ -0.59
SF3A1-207ENST00000471342 RGS20O76081 388 aa11.37□□□□□ -0.59
SF3A1-207ENST00000471342 TBC1D8O95759 1140 aa11.37□□□□□ -0.59
SF3A1-207ENST00000471342 ALAS1P13196 640 aa11.37□□□□□ -0.59
SF3A1-207ENST00000471342 EDNRBP24530 442 aa11.37□□□□□ -0.59
SF3A1-207ENST00000471342 HOXA13P31271 388 aaPredicted RBP11.37□□□□□ -0.59
SF3A1-207ENST00000471342 GCLCP48506 637 aaPredicted RBP11.37□□□□□ -0.59
SF3A1-207ENST00000471342 NAPAP54920 295 aa11.37□□□□□ -0.59
SF3A1-207ENST00000471342 BAATQ14032 418 aaPredicted RBP11.37□□□□□ -0.59
SF3A1-207ENST00000471342 NBR1Q14596 966 aa11.37□□□□□ -0.59
SF3A1-207ENST00000471342 PTPAQ15257 358 aa11.37□□□□□ -0.59
SF3A1-207ENST00000471342 TKFCQ3LXA3 575 aa11.37□□□□□ -0.59
SF3A1-207ENST00000471342 MORN1Q5T089 497 aa11.37□□□□□ -0.59
SF3A1-207ENST00000471342 FERMT3Q86UX7 667 aa11.37□□□□□ -0.59
SF3A1-207ENST00000471342 GPRC5AQ8NFJ5 357 aa11.37□□□□□ -0.59
SF3A1-207ENST00000471342 MORC4Q8TE76 937 aa11.37□□□□□ -0.59
SF3A1-207ENST00000471342 WASF1Q92558 559 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms