RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 SCG2P13521 617 aa9.36□□□□□ -0.91
HDAC6-216ENST00000468949 NAPAP54920 295 aa9.36□□□□□ -0.91
HDAC6-216ENST00000468949 HERVK_113P62684 666 aa9.36□□□□□ -0.91
HDAC6-216ENST00000468949 CCNA1P78396 465 aa9.36□□□□□ -0.91
HDAC6-216ENST00000468949 SAFBQ15424 915 aaKnown RBP eCLIP9.36□□□□□ -0.91
HDAC6-216ENST00000468949 QRICH1Q2TAL8 776 aa9.36□□□□□ -0.91
HDAC6-216ENST00000468949 USH1GQ495M9 461 aa9.36□□□□□ -0.91
HDAC6-216ENST00000468949 CPXCR1Q8N123 301 aa9.36□□□□□ -0.91
HDAC6-216ENST00000468949 FAM43AQ8N2R8 423 aa9.36□□□□□ -0.91
HDAC6-216ENST00000468949 ERO1AQ96HE7 468 aa9.36□□□□□ -0.91
HDAC6-216ENST00000468949 C8orf76Q96K31 380 aa9.36□□□□□ -0.91
HDAC6-216ENST00000468949 AMNQ9BXJ7 453 aa9.36□□□□□ -0.91
HDAC6-216ENST00000468949 RANBP17Q9H2T7 1088 aaKnown RBP9.36□□□□□ -0.91
HDAC6-216ENST00000468949 RIOX1Q9H6W3 641 aa9.36□□□□□ -0.91
HDAC6-216ENST00000468949 JMJD4Q9H9V9 463 aa9.36□□□□□ -0.91
HDAC6-216ENST00000468949 ZFYVE28Q9HCC9 887 aa9.36□□□□□ -0.91
HDAC6-216ENST00000468949 FAM217BQ9NTX9 383 aaPredicted RBP9.36□□□□□ -0.91
HDAC6-216ENST00000468949 VPS37CA5D8V6 355 aaPredicted RBP9.35□□□□□ -0.91
HDAC6-216ENST00000468949 VWA5AO00534 786 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 CYTH3O43739 400 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 CTDNEP1O95476 244 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 ICAM1P05362 532 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 CYP2C8P10632 490 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 COPB2P35606 906 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 GCLCP48506 637 aaPredicted RBP9.35□□□□□ -0.91
HDAC6-216ENST00000468949 OAZ1P54368 228 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 NLRP5P59047 1200 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 SNAP25P60880 206 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 ST3GAL1Q11201 340 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 NTRK3Q16288 839 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 PKN2Q16513 984 aaKnown RBP9.35□□□□□ -0.91
HDAC6-216ENST00000468949 PFKFB3Q16875 520 aaPredicted RBP9.35□□□□□ -0.91
HDAC6-216ENST00000468949 WDR78Q5VTH9 848 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 SNRNP48Q6IEG0 339 aaKnown RBP9.35□□□□□ -0.91
HDAC6-216ENST00000468949 GPAT2Q6NUI2 795 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 PPP1R18Q6NYC8 613 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 NBPF11Q86T75 865 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 SMARCC2Q8TAQ2 1214 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 GPKOWQ92917 476 aaPredicted RBP eCLIP9.35□□□□□ -0.912e-6■■□□□ 12.7
HDAC6-216ENST00000468949 CUL5Q93034 780 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 TEX13BQ9BXU2 312 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 SLC38A10Q9HBR0 1119 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 RAVER2Q9HCJ3 691 aaKnown RBP9.35□□□□□ -0.91
HDAC6-216ENST00000468949 HOMER2Q9NSB8 354 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 MRPL11Q9Y3B7 192 aaKnown RBP9.35□□□□□ -0.91
HDAC6-216ENST00000468949 PCDHA1Q9Y5I3 950 aa9.35□□□□□ -0.91
HDAC6-216ENST00000468949 ABCB11O95342 1321 aa9.34□□□□□ -0.91
HDAC6-216ENST00000468949 MAP3K13O43283 966 aa9.34□□□□□ -0.91
HDAC6-216ENST00000468949 ALAS1P13196 640 aa9.34□□□□□ -0.91
HDAC6-216ENST00000468949 PDIA4P13667 645 aaKnown RBP9.34□□□□□ -0.91
HDAC6-216ENST00000468949 CALML3P27482 149 aa9.34□□□□□ -0.91
HDAC6-216ENST00000468949 GNA11P29992 359 aa9.34□□□□□ -0.91
HDAC6-216ENST00000468949 ADCY7P51828 1080 aa9.34□□□□□ -0.91
HDAC6-216ENST00000468949 FUT2Q10981 343 aa9.34□□□□□ -0.91
HDAC6-216ENST00000468949 MOGSQ13724 837 aa9.34□□□□□ -0.91
HDAC6-216ENST00000468949 LARP1BQ659C4 914 aaKnown RBP9.34□□□□□ -0.91
HDAC6-216ENST00000468949 WWC2Q6AWC2 1192 aa9.34□□□□□ -0.91
HDAC6-216ENST00000468949 MCTP1Q6DN14 999 aa9.34□□□□□ -0.91
HDAC6-216ENST00000468949 BICD2Q8TD16 824 aa9.34□□□□□ -0.91
HDAC6-216ENST00000468949 P2RX7Q99572 595 aaKnown RBP9.34□□□□□ -0.91
HDAC6-216ENST00000468949 GLT8D2Q9H1C3 349 aa9.34□□□□□ -0.91
HDAC6-216ENST00000468949 R3HDMLQ9H3Y0 253 aa9.34□□□□□ -0.91
HDAC6-216ENST00000468949 C6orf50Q9HD87 102 aa9.34□□□□□ -0.91
HDAC6-216ENST00000468949 BARHL2Q9NY43 387 aa9.34□□□□□ -0.91
HDAC6-216ENST00000468949 VPS54Q9P1Q0 977 aa9.34□□□□□ -0.91
HDAC6-216ENST00000468949 RABGAP1Q9Y3P9 1069 aa9.34□□□□□ -0.91
HDAC6-216ENST00000468949 ADGRA2Q96PE1 1338 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 ZSWIM8A7E2V4 1837 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 TLR2O60603 784 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 DTNBO60941 627 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 SLC25A27O95847 323 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 STAT3P40763 770 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 SP3Q02447 781 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 TKFCQ3LXA3 575 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 FBXO46Q6PJ61 603 aaPredicted RBP9.33□□□□□ -0.92
HDAC6-216ENST00000468949 LBX2Q6XYB7 198 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 NCAPG2Q86XI2 1143 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 MCF2L2Q86YR7 1114 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 FAM177A1Q8N128 213 aaPredicted RBP9.33□□□□□ -0.92
HDAC6-216ENST00000468949 ANKRD13CQ8N6S4 541 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 GPRC5AQ8NFJ5 357 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 COA7Q96BR5 231 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 MTMR8Q96EF0 704 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 KIF12Q96FN5 646 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 PHF12Q96QT6 1004 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 SPATC1LQ9H0A9 340 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 EHMT1Q9H9B1 1298 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 SH3GLB2Q9NR46 395 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 RNF146Q9NTX7 359 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 FBXO40Q9UH90 709 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 IVNS1ABPQ9Y6Y0 642 aa9.33□□□□□ -0.92
HDAC6-216ENST00000468949 RBBP6Q7Z6E9 1792 aaKnown RBP9.32□□□□□ -0.92
HDAC6-216ENST00000468949 CCDC85CA6NKD9 419 aa9.32□□□□□ -0.92
HDAC6-216ENST00000468949 STXBP3O00186 592 aa9.32□□□□□ -0.92
HDAC6-216ENST00000468949 KRT2P35908 639 aa9.32□□□□□ -0.92
HDAC6-216ENST00000468949 MRPL12P52815 198 aaKnown RBP9.32□□□□□ -0.92
HDAC6-216ENST00000468949 ERVK-9P63128 1117 aa9.32□□□□□ -0.92
HDAC6-216ENST00000468949 ERVK-24P63145 666 aa9.32□□□□□ -0.92
HDAC6-216ENST00000468949 GUCY1B3Q02153 619 aa9.32□□□□□ -0.92
HDAC6-216ENST00000468949 PDAP1Q13442 181 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms