RNA–Protein interactions for RNA: ENST00000468338.5

COL4A6-205, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 5

Gene COL4A6, Length 865 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-205ENST00000468338 SMCHD1A6NHR9 2005 aa13.12□□□□□ -0.31
COL4A6-205ENST00000468338 A6NJR5 290 aa13.11□□□□□ -0.31
COL4A6-205ENST00000468338 CYP21A2P08686 494 aa13.11□□□□□ -0.31
COL4A6-205ENST00000468338 PDHBP11177 359 aa13.11□□□□□ -0.31
COL4A6-205ENST00000468338 CCDC178Q5BJE1 867 aa13.11□□□□□ -0.31
COL4A6-205ENST00000468338 SNRNP48Q6IEG0 339 aaKnown RBP13.11□□□□□ -0.31
COL4A6-205ENST00000468338 KCTD1Q719H9 257 aa13.11□□□□□ -0.31
COL4A6-205ENST00000468338 RASGRP2Q7LDG7 609 aa13.11□□□□□ -0.31
COL4A6-205ENST00000468338 DPP9Q86TI2 863 aa13.11□□□□□ -0.31
COL4A6-205ENST00000468338 IQCA1Q86XH1 822 aa13.11□□□□□ -0.31
COL4A6-205ENST00000468338 CCDC136Q96JN2 1154 aa13.11□□□□□ -0.31
COL4A6-205ENST00000468338 KRT23Q9C075 422 aa13.11□□□□□ -0.31
COL4A6-205ENST00000468338 CNNM2Q9H8M5 875 aa13.11□□□□□ -0.31
COL4A6-205ENST00000468338 PRR12Q9ULL5 1215 aa13.11□□□□□ -0.31
COL4A6-205ENST00000468338 PLXNA1Q9UIW2 1896 aa13.1□□□□□ -0.31
COL4A6-205ENST00000468338 DNAJC25-GNG10A0A024R161 153 aa13.1□□□□□ -0.31
COL4A6-205ENST00000468338 ZNF792Q3KQV3 632 aa13.1□□□□□ -0.31
COL4A6-205ENST00000468338 MFSD14CQ5VZR4 134 aa13.1□□□□□ -0.31
COL4A6-205ENST00000468338 LHX8Q68G74 356 aa13.1□□□□□ -0.31
COL4A6-205ENST00000468338 CPXCR1Q8N123 301 aa13.1□□□□□ -0.31
COL4A6-205ENST00000468338 ENAHQ8N8S7 591 aaPredicted RBP13.1□□□□□ -0.31
COL4A6-205ENST00000468338 CHST13Q8NET6 341 aa13.1□□□□□ -0.31
COL4A6-205ENST00000468338 ZSCAN10Q96SZ4 725 aaPredicted RBP13.1□□□□□ -0.31
COL4A6-205ENST00000468338 MMP19Q99542 508 aa13.1□□□□□ -0.31
COL4A6-205ENST00000468338 ESYT1Q9BSJ8 1104 aa13.1□□□□□ -0.31
COL4A6-205ENST00000468338 RAVER2Q9HCJ3 691 aaKnown RBP13.1□□□□□ -0.31
COL4A6-205ENST00000468338 SLC5A4Q9NY91 659 aa13.1□□□□□ -0.31
COL4A6-205ENST00000468338 OGDHLQ9ULD0 1010 aa13.1□□□□□ -0.31
COL4A6-205ENST00000468338 CYBAP13498 195 aa13.09□□□□□ -0.31
COL4A6-205ENST00000468338 CCND3P30281 292 aaPredicted RBP13.09□□□□□ -0.31
COL4A6-205ENST00000468338 ZNF543Q08ER8 600 aa13.09□□□□□ -0.31
COL4A6-205ENST00000468338 KCTD2Q14681 263 aa13.09□□□□□ -0.31
COL4A6-205ENST00000468338 SEC23AQ15436 765 aa13.09□□□□□ -0.31
COL4A6-205ENST00000468338 TTBK2Q6IQ55 1244 aa13.09□□□□□ -0.31
COL4A6-205ENST00000468338 ANKLE1Q8NAG6 615 aa13.09□□□□□ -0.31
COL4A6-205ENST00000468338 TRPV1Q8NER1 839 aa13.09□□□□□ -0.31
COL4A6-205ENST00000468338 MAML3Q96JK9 1138 aa13.09□□□□□ -0.31
COL4A6-205ENST00000468338 PHOX2BQ99453 314 aa13.09□□□□□ -0.31
COL4A6-205ENST00000468338 ZKSCAN3Q9BRR0 538 aa13.09□□□□□ -0.31
COL4A6-205ENST00000468338 LSG1Q9H089 658 aaKnown RBP13.09□□□□□ -0.31
COL4A6-205ENST00000468338 FBXO40Q9UH90 709 aa13.09□□□□□ -0.31
COL4A6-205ENST00000468338 TAF6LQ9Y6J9 622 aa13.09□□□□□ -0.31
COL4A6-205ENST00000468338 TFRCP02786 760 aaKnown RBP13.08□□□□□ -0.32
COL4A6-205ENST00000468338 PGK2P07205 417 aa13.08□□□□□ -0.32
COL4A6-205ENST00000468338 CYP2C19P33261 490 aa13.08□□□□□ -0.32
COL4A6-205ENST00000468338 ERICH6BQ5W0A0 696 aa13.08□□□□□ -0.32
COL4A6-205ENST00000468338 STOX1Q6ZVD7 989 aa13.08□□□□□ -0.32
COL4A6-205ENST00000468338 RANBP17Q9H2T7 1088 aaKnown RBP13.08□□□□□ -0.32
COL4A6-205ENST00000468338 NRBP1Q9UHY1 535 aa13.08□□□□□ -0.32
COL4A6-205ENST00000468338 RBM8AQ9Y5S9 174 aaKnown RBP13.08□□□□□ -0.32
COL4A6-205ENST00000468338 TNKSO95271 1327 aa13.08□□□□□ -0.32
COL4A6-205ENST00000468338 E7EWF7 191 aa13.07□□□□□ -0.32
COL4A6-205ENST00000468338 FARP2O94887 1054 aaPredicted RBP13.07□□□□□ -0.32
COL4A6-205ENST00000468338 ICAM1P05362 532 aa13.07□□□□□ -0.32
COL4A6-205ENST00000468338 CCDC96Q2M329 555 aa13.07□□□□□ -0.32
COL4A6-205ENST00000468338 TKFCQ3LXA3 575 aa13.07□□□□□ -0.32
COL4A6-205ENST00000468338 GPATCH4Q5T3I0 446 aaKnown RBP13.07□□□□□ -0.32
COL4A6-205ENST00000468338 SYDE2Q5VT97 1194 aa13.07□□□□□ -0.32
COL4A6-205ENST00000468338 MAMDC4Q6UXC1 1216 aa13.07□□□□□ -0.32
COL4A6-205ENST00000468338 CYB5R4Q7L1T6 521 aa13.07□□□□□ -0.32
COL4A6-205ENST00000468338 METTL3Q86U44 580 aaKnown RBP13.07□□□□□ -0.32
COL4A6-205ENST00000468338 MSL3Q8N5Y2 521 aaKnown RBP13.07□□□□□ -0.32
COL4A6-205ENST00000468338 PNMA1Q8ND90 353 aa13.07□□□□□ -0.32
COL4A6-205ENST00000468338 CHMP4CQ96CF2 233 aa13.07□□□□□ -0.32
COL4A6-205ENST00000468338 FGD4Q96M96 766 aa13.07□□□□□ -0.32
COL4A6-205ENST00000468338 AGBL1Q96MI9 1066 aa13.07□□□□□ -0.32
COL4A6-205ENST00000468338 FAM217BQ9NTX9 383 aaPredicted RBP13.07□□□□□ -0.32
COL4A6-205ENST00000468338 CTDP1Q9Y5B0 961 aaPredicted RBP13.07□□□□□ -0.32
COL4A6-205ENST00000468338 FRMPD3Q5JV73 1810 aa13.06□□□□□ -0.32
COL4A6-205ENST00000468338 CEP290O15078 2479 aa13.06□□□□□ -0.32
COL4A6-205ENST00000468338 MSCO60682 206 aa13.06□□□□□ -0.32
COL4A6-205ENST00000468338 NEFLP07196 543 aa13.06□□□□□ -0.32
COL4A6-205ENST00000468338 SLC16A2P36021 539 aa13.06□□□□□ -0.32
COL4A6-205ENST00000468338 TRDNQ13061 729 aa13.06□□□□□ -0.32
COL4A6-205ENST00000468338 IKQ13123 557 aaPredicted RBP13.06□□□□□ -0.32
COL4A6-205ENST00000468338 NECTIN1Q15223 517 aa13.06□□□□□ -0.32
COL4A6-205ENST00000468338 FAM133AQ8N9E0 248 aa13.06□□□□□ -0.32
COL4A6-205ENST00000468338 NCOA7Q8NI08 942 aa13.06□□□□□ -0.32
COL4A6-205ENST00000468338 TINF2Q9BSI4 451 aa13.06□□□□□ -0.32
COL4A6-205ENST00000468338 UBAC1Q9BSL1 405 aa13.06□□□□□ -0.32
COL4A6-205ENST00000468338 ACAD9Q9H845 621 aa13.06□□□□□ -0.32
COL4A6-205ENST00000468338 DDX20Q9UHI6 824 aaKnown RBP13.06□□□□□ -0.32
COL4A6-205ENST00000468338 MTMR7Q9Y216 660 aa13.06□□□□□ -0.32
COL4A6-205ENST00000468338 FRMPD2Q68DX3 1309 aaPredicted RBP13.06□□□□□ -0.32
COL4A6-205ENST00000468338 MCM3APO60318 1980 aa13.05□□□□□ -0.32
COL4A6-205ENST00000468338 SEPT4O43236 478 aa13.05□□□□□ -0.32
COL4A6-205ENST00000468338 C6orf132Q5T0Z8 1188 aa13.05□□□□□ -0.32
COL4A6-205ENST00000468338 PRPF38BQ5VTL8 546 aaKnown RBP13.05□□□□□ -0.32
COL4A6-205ENST00000468338 KIAA1211Q6ZU35 1233 aa13.05□□□□□ -0.32
COL4A6-205ENST00000468338 MB21D2Q8IYB1 491 aaPredicted RBP13.05□□□□□ -0.32
COL4A6-205ENST00000468338 DDX11Q96FC9 970 aa13.05□□□□□ -0.32
COL4A6-205ENST00000468338 PAWRQ96IZ0 340 aaKnown RBP13.05□□□□□ -0.32
COL4A6-205ENST00000468338 TRERF1Q96PN7 1200 aa13.05□□□□□ -0.32
COL4A6-205ENST00000468338 MTA3Q9BTC8 594 aa13.05□□□□□ -0.32
COL4A6-205ENST00000468338 KAT14Q9H8E8 782 aa13.05□□□□□ -0.32
COL4A6-205ENST00000468338 A1CFQ9NQ94 594 aaKnown RBP13.05□□□□□ -0.32
COL4A6-205ENST00000468338 RNF146Q9NTX7 359 aa13.05□□□□□ -0.32
COL4A6-205ENST00000468338 PNMA2Q9UL42 364 aa13.05□□□□□ -0.32
COL4A6-205ENST00000468338 ISY1Q9ULR0 285 aaKnown RBP13.05□□□□□ -0.32
COL4A6-205ENST00000468338 TRAK2O60296 914 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms