RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ATP8A2Q9NTI2 1148 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 TFCP2L1Q9NZI6 479 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 SPATA31A6Q5VVP1 1343 aa13.92□□□□□ -0.18
HDAC4-208ENST00000463007 STAT6P42226 847 aa13.92□□□□□ -0.18
HDAC4-208ENST00000463007 GTF2A1P52655 376 aaPredicted RBP13.92□□□□□ -0.18
HDAC4-208ENST00000463007 PTPROQ16827 1216 aa13.92□□□□□ -0.18
HDAC4-208ENST00000463007 TTC31Q49AM3 519 aaPredicted RBP13.92□□□□□ -0.18
HDAC4-208ENST00000463007 KCTD16Q68DU8 428 aa13.92□□□□□ -0.18
HDAC4-208ENST00000463007 GPATCH11Q8N954 259 aa13.92□□□□□ -0.18
HDAC4-208ENST00000463007 IQUBQ8NA54 791 aa13.92□□□□□ -0.18
HDAC4-208ENST00000463007 MTRQ99707 1265 aa13.92□□□□□ -0.18
HDAC4-208ENST00000463007 NAA15Q9BXJ9 866 aaKnown RBP13.92□□□□□ -0.18
HDAC4-208ENST00000463007 REXO2Q9Y3B8 237 aaKnown RBP13.92□□□□□ -0.18
HDAC4-208ENST00000463007 IVLP07476 585 aa13.92□□□□□ -0.18
HDAC4-208ENST00000463007 STIM1Q13586 685 aa13.92□□□□□ -0.18
HDAC4-208ENST00000463007 CDKAL1Q5VV42 579 aa13.92□□□□□ -0.18
HDAC4-208ENST00000463007 CATIPQ7Z7H3 387 aa13.92□□□□□ -0.18
HDAC4-208ENST00000463007 HDAC7Q8WUI4 952 aa13.92□□□□□ -0.18
HDAC4-208ENST00000463007 FAM107BQ9H098 131 aa13.92□□□□□ -0.18
HDAC4-208ENST00000463007 BRMS1Q9HCU9 246 aa13.92□□□□□ -0.18
HDAC4-208ENST00000463007 RTCBQ9Y3I0 505 aaKnown RBP13.92□□□□□ -0.18
HDAC4-208ENST00000463007 QSER1Q2KHR3 1735 aa13.92□□□□□ -0.18
HDAC4-208ENST00000463007 RCCD1A6NED2 376 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 POTEB2H3BUK9 544 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 MYO1BO43795 1136 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 PLEKP08567 350 aaPredicted RBP13.91□□□□□ -0.18
HDAC4-208ENST00000463007 PARP1P09874 1014 aaKnown RBP13.91□□□□□ -0.18
HDAC4-208ENST00000463007 CCDC96Q2M329 555 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 MSANTD4Q8NCY6 345 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 GSDMAQ96QA5 445 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 ACBD3Q9H3P7 528 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 RBM28Q9NW13 759 aaKnown RBP13.91□□□□□ -0.18
HDAC4-208ENST00000463007 NKRFO15226 690 aaKnown RBP eCLIP13.91□□□□□ -0.188e-6■□□□□ 9.5
HDAC4-208ENST00000463007 CRY2Q49AN0 593 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 SND1Q7KZF4 910 aaKnown RBP eCLIP13.91□□□□□ -0.182e-7■■■■■ 27.5
HDAC4-208ENST00000463007 FAM71BQ8TC56 605 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 GBP3Q9H0R5 595 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 AATFQ9NY61 560 aaKnown RBP eCLIP13.91□□□□□ -0.18
HDAC4-208ENST00000463007 ARPP21Q9UBL0 812 aaPredicted RBP13.91□□□□□ -0.18
HDAC4-208ENST00000463007 RAB21Q9UL25 225 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 ATP1A2P50993 1020 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 WHAMMP3Q1A5X7 153 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 CCDC178Q5BJE1 867 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 CCDC24Q8N4L8 307 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 CERKQ8TCT0 537 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 ANKS1AQ92625 1134 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 RRP36Q96EU6 259 aaKnown RBP13.91□□□□□ -0.18
HDAC4-208ENST00000463007 CPVLQ9H3G5 476 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 CENPHQ9H3R5 247 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 LRRC4BQ9NT99 713 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 NRXN2Q9P2S2 1712 aa13.91□□□□□ -0.18
HDAC4-208ENST00000463007 PDE2AO00408 941 aaPredicted RBP13.9□□□□□ -0.18
HDAC4-208ENST00000463007 ZEB2O60315 1214 aa13.9□□□□□ -0.18
HDAC4-208ENST00000463007 CALM1P0DP23 149 aa13.9□□□□□ -0.18
HDAC4-208ENST00000463007 CALM2P0DP24 149 aa13.9□□□□□ -0.18
HDAC4-208ENST00000463007 CALM3P0DP25 149 aa13.9□□□□□ -0.18
HDAC4-208ENST00000463007 CYP2D6P10635 497 aa13.9□□□□□ -0.18
HDAC4-208ENST00000463007 NFIXQ14938 502 aa13.9□□□□□ -0.18
HDAC4-208ENST00000463007 SRBD1Q8N5C6 995 aaKnown RBP13.9□□□□□ -0.18
HDAC4-208ENST00000463007 OR8K1Q8NGG5 319 aa13.9□□□□□ -0.18
HDAC4-208ENST00000463007 ANKRD31Q8N7Z5 1873 aa13.9□□□□□ -0.18
HDAC4-208ENST00000463007 SYF2O95926 243 aaKnown RBP13.9□□□□□ -0.18
HDAC4-208ENST00000463007 RPN1P04843 607 aaKnown RBP13.9□□□□□ -0.18
HDAC4-208ENST00000463007 PBX1P40424 430 aa13.9□□□□□ -0.18
HDAC4-208ENST00000463007 GRAPQ13588 217 aa13.9□□□□□ -0.18
HDAC4-208ENST00000463007 GRAPLQ8TC17 118 aaPredicted RBP13.9□□□□□ -0.18
HDAC4-208ENST00000463007 MAGEC2Q9UBF1 373 aaPredicted RBP13.9□□□□□ -0.18
HDAC4-208ENST00000463007 USP21Q9UK80 565 aa13.9□□□□□ -0.18
HDAC4-208ENST00000463007 NT5C2P49902 561 aa13.89□□□□□ -0.19
HDAC4-208ENST00000463007 SF3A3Q12874 501 aaKnown RBP eCLIP13.89□□□□□ -0.192e-8■■■■■ 32.2
HDAC4-208ENST00000463007 FAM182BQ5T319 152 aa13.89□□□□□ -0.19
HDAC4-208ENST00000463007 HNRNPLLQ8WVV9 542 aaKnown RBP13.89□□□□□ -0.19
HDAC4-208ENST00000463007 CRNKL1Q9BZJ0 848 aaKnown RBP13.89□□□□□ -0.19
HDAC4-208ENST00000463007 MTIF2P46199 727 aaKnown RBP13.89□□□□□ -0.19
HDAC4-208ENST00000463007 TBC1D8BQ0IIM8 1120 aa13.89□□□□□ -0.19
HDAC4-208ENST00000463007 GRIK5Q16478 980 aa13.89□□□□□ -0.19
HDAC4-208ENST00000463007 IL17AQ16552 155 aa13.89□□□□□ -0.19
HDAC4-208ENST00000463007 TYW1BQ6NUM6 668 aa13.89□□□□□ -0.19
HDAC4-208ENST00000463007 SH3RF1Q7Z6J0 888 aa13.89□□□□□ -0.19
HDAC4-208ENST00000463007 SELENOOQ9BVL4 669 aa13.89□□□□□ -0.19
HDAC4-208ENST00000463007 FAM207AQ9NSI2 230 aaPredicted RBP13.89□□□□□ -0.19
HDAC4-208ENST00000463007 GOLGA6CA6NDK9 693 aa13.89□□□□□ -0.19
HDAC4-208ENST00000463007 GOLGA6DP0CG33 693 aa13.89□□□□□ -0.19
HDAC4-208ENST00000463007 HERVK_113P62684 666 aa13.89□□□□□ -0.19
HDAC4-208ENST00000463007 IQCA1Q86XH1 822 aa13.89□□□□□ -0.19
HDAC4-208ENST00000463007 KAT14Q9H8E8 782 aa13.89□□□□□ -0.19
HDAC4-208ENST00000463007 MLXIPQ9HAP2 919 aa13.89□□□□□ -0.19
HDAC4-208ENST00000463007 IL17RBQ9NRM6 502 aa13.89□□□□□ -0.19
HDAC4-208ENST00000463007 GOLGA6AQ9NYA3 693 aa13.89□□□□□ -0.19
HDAC4-208ENST00000463007 SNED1Q8TER0 1413 aa13.88□□□□□ -0.19
HDAC4-208ENST00000463007 TULP1O00294 542 aaPredicted RBP13.88□□□□□ -0.19
HDAC4-208ENST00000463007 NCK2O43639 380 aa13.88□□□□□ -0.19
HDAC4-208ENST00000463007 USP5P45974 858 aa13.88□□□□□ -0.19
HDAC4-208ENST00000463007 USP14P54578 494 aa13.88□□□□□ -0.19
HDAC4-208ENST00000463007 C12orf60Q5U649 245 aa13.88□□□□□ -0.19
HDAC4-208ENST00000463007 CTCFLQ8NI51 663 aaPredicted RBP13.88□□□□□ -0.19
HDAC4-208ENST00000463007 DEF6Q9H4E7 631 aa13.88□□□□□ -0.19
HDAC4-208ENST00000463007 LRWD1Q9UFC0 647 aa13.88□□□□□ -0.19
HDAC4-208ENST00000463007 HPCAL4Q9UM19 191 aa13.88□□□□□ -0.19
HDAC4-208ENST00000463007 LEMD3Q9Y2U8 911 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms