RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 MSCO60682 206 aa13.79□□□□□ -0.2
VPS52-213ENST00000461743 GJA8P48165 433 aa13.79□□□□□ -0.2
VPS52-213ENST00000461743 CCL14Q16627 93 aa13.79□□□□□ -0.2
VPS52-213ENST00000461743 SYNE3Q6ZMZ3 975 aa13.79□□□□□ -0.2
VPS52-213ENST00000461743 STAG2Q8N3U4 1231 aa13.79□□□□□ -0.2
VPS52-213ENST00000461743 TM6SF1Q9BZW5 370 aa13.79□□□□□ -0.2
VPS52-213ENST00000461743 UNC93B1Q9H1C4 597 aa13.79□□□□□ -0.2
VPS52-213ENST00000461743 RIOX1Q9H6W3 641 aa13.79□□□□□ -0.2
VPS52-213ENST00000461743 RBM28Q9NW13 759 aaKnown RBP13.79□□□□□ -0.2
VPS52-213ENST00000461743 ALPK3Q96L96 1907 aa13.79□□□□□ -0.2
VPS52-213ENST00000461743 ZBTB5O15062 677 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 CYBAP13498 195 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 CASTP20810 708 aaKnown RBP13.78□□□□□ -0.2
VPS52-213ENST00000461743 RPS6KB1P23443 525 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 CACNB2Q08289 660 aaPredicted RBP13.78□□□□□ -0.2
VPS52-213ENST00000461743 PPP2R5BQ15173 497 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 QRICH1Q2TAL8 776 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 APOA5Q6Q788 366 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 MAMDC4Q6UXC1 1216 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 FBXO11Q86XK2 927 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 FAM133AQ8N9E0 248 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 RGS22Q8NE09 1264 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 NUP133Q8WUM0 1156 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 TINF2Q9BSI4 451 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 AMNQ9BXJ7 453 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 AGXT2Q9BYV1 514 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 UBA5Q9GZZ9 404 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 JMJD4Q9H9V9 463 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 CYP39A1Q9NYL5 469 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 FLRT1Q9NZU1 646 aa13.78□□□□□ -0.2
VPS52-213ENST00000461743 POTEFA5A3E0 1075 aa13.77□□□□□ -0.21
VPS52-213ENST00000461743 POTEB2H3BUK9 544 aa13.77□□□□□ -0.21
VPS52-213ENST00000461743 PGK2P07205 417 aa13.77□□□□□ -0.21
VPS52-213ENST00000461743 SLC4A3P48751 1232 aa13.77□□□□□ -0.21
VPS52-213ENST00000461743 SNAP25P60880 206 aa13.77□□□□□ -0.21
VPS52-213ENST00000461743 FGD1P98174 961 aa13.77□□□□□ -0.21
VPS52-213ENST00000461743 GHRHRQ02643 423 aa13.77□□□□□ -0.21
VPS52-213ENST00000461743 COL9A3Q14050 684 aaPredicted RBP13.77□□□□□ -0.21
VPS52-213ENST00000461743 MICU3Q86XE3 530 aa13.77□□□□□ -0.21
VPS52-213ENST00000461743 SAMD3Q8N6K7 520 aa13.77□□□□□ -0.21
VPS52-213ENST00000461743 ANKLE1Q8NAG6 615 aa13.77□□□□□ -0.21
VPS52-213ENST00000461743 U2AF1L4Q8WU68 220 aaKnown RBP13.77□□□□□ -0.21
VPS52-213ENST00000461743 IL17RAQ96F46 866 aa13.77□□□□□ -0.21
VPS52-213ENST00000461743 LRRC2Q9BYS8 371 aa13.77□□□□□ -0.21
VPS52-213ENST00000461743 CRISPLD2Q9H0B8 497 aa13.77□□□□□ -0.21
VPS52-213ENST00000461743 CPVLQ9H3G5 476 aa13.77□□□□□ -0.21
VPS52-213ENST00000461743 MRPL11Q9Y3B7 192 aaKnown RBP13.77□□□□□ -0.21
VPS52-213ENST00000461743 PNMA6FA0A0J9YX94 578 aa13.76□□□□□ -0.21
VPS52-213ENST00000461743 ASB14A6NK59 587 aa13.76□□□□□ -0.21
VPS52-213ENST00000461743 ZBTB43O43298 467 aa13.76□□□□□ -0.21
VPS52-213ENST00000461743 SGPL1O95470 568 aa13.76□□□□□ -0.21
VPS52-213ENST00000461743 TRIM32Q13049 653 aa13.76□□□□□ -0.21
VPS52-213ENST00000461743 MUM1L1Q5H9M0 696 aa13.76□□□□□ -0.21
VPS52-213ENST00000461743 NSMFQ6X4W1 530 aa13.76□□□□□ -0.21
VPS52-213ENST00000461743 TMTC3Q6ZXV5 915 aa13.76□□□□□ -0.21
VPS52-213ENST00000461743 RUFY3Q7L099 469 aa13.76□□□□□ -0.21
VPS52-213ENST00000461743 MCF2L2Q86YR7 1114 aa13.76□□□□□ -0.21
VPS52-213ENST00000461743 CLEC4DQ8WXI8 215 aa13.76□□□□□ -0.21
VPS52-213ENST00000461743 SHISA4Q96DD7 197 aa13.76□□□□□ -0.21
VPS52-213ENST00000461743 MPHOSPH6Q99547 160 aaKnown RBP13.76□□□□□ -0.21
VPS52-213ENST00000461743 ZSWIM6Q9HCJ5 1215 aa13.76□□□□□ -0.21
VPS52-213ENST00000461743 GPHNQ9NQX3 736 aaPredicted RBP13.76□□□□□ -0.21
VPS52-213ENST00000461743 MAP3K20Q9NYL2 800 aaKnown RBP13.76□□□□□ -0.21
VPS52-213ENST00000461743 ADD3Q9UEY8 706 aaKnown RBP13.76□□□□□ -0.21
VPS52-213ENST00000461743 CYP46A1Q9Y6A2 500 aa13.76□□□□□ -0.21
VPS52-213ENST00000461743 KLF18A0A0U1RQI7 1052 aa13.75□□□□□ -0.21
VPS52-213ENST00000461743 NFIBO00712 420 aa13.75□□□□□ -0.21
VPS52-213ENST00000461743 CYTH3O43739 400 aa13.75□□□□□ -0.21
VPS52-213ENST00000461743 CYP2C19P33261 490 aa13.75□□□□□ -0.21
VPS52-213ENST00000461743 RTN1Q16799 776 aa13.75□□□□□ -0.21
VPS52-213ENST00000461743 USH1GQ495M9 461 aa13.75□□□□□ -0.21
VPS52-213ENST00000461743 RNF207Q6ZRF8 634 aa13.75□□□□□ -0.21
VPS52-213ENST00000461743 FANCBQ8NB91 859 aa13.75□□□□□ -0.21
VPS52-213ENST00000461743 RRP36Q96EU6 259 aaKnown RBP13.75□□□□□ -0.21
VPS52-213ENST00000461743 FGD4Q96M96 766 aa13.75□□□□□ -0.21
VPS52-213ENST00000461743 DEFB118Q96PH6 123 aa13.75□□□□□ -0.21
VPS52-213ENST00000461743 MYL10Q9BUA6 226 aa13.75□□□□□ -0.21
VPS52-213ENST00000461743 SEC63Q9UGP8 760 aaKnown RBP13.75□□□□□ -0.21
VPS52-213ENST00000461743 CNPY2Q9Y2B0 182 aa13.75□□□□□ -0.21
VPS52-213ENST00000461743 CNTNAP5Q8WYK1 1306 aa13.74□□□□□ -0.21
VPS52-213ENST00000461743 CCDC196A0A1B0GTZ2 297 aa13.74□□□□□ -0.21
VPS52-213ENST00000461743 B4DLN1 442 aa13.74□□□□□ -0.21
VPS52-213ENST00000461743 SEPT4O43236 478 aa13.74□□□□□ -0.21
VPS52-213ENST00000461743 MYCP01106 439 aaPredicted RBP13.74□□□□□ -0.21
VPS52-213ENST00000461743 CCND3P30281 292 aaPredicted RBP13.74□□□□□ -0.21
VPS52-213ENST00000461743 MRPL12P52815 198 aaKnown RBP13.74□□□□□ -0.21
VPS52-213ENST00000461743 EVCP57679 992 aa13.74□□□□□ -0.21
VPS52-213ENST00000461743 SLC35G1Q2M3R5 365 aa13.74□□□□□ -0.21
VPS52-213ENST00000461743 C8orf34Q49A92 452 aa13.74□□□□□ -0.21
VPS52-213ENST00000461743 Q6ZUG5 572 aa13.74□□□□□ -0.21
VPS52-213ENST00000461743 ARMCX2Q7L311 632 aa13.74□□□□□ -0.21
VPS52-213ENST00000461743 HOMER1Q86YM7 354 aa13.74□□□□□ -0.21
VPS52-213ENST00000461743 TEX2Q8IWB9 1127 aa13.74□□□□□ -0.21
VPS52-213ENST00000461743 DNERQ8NFT8 737 aa13.74□□□□□ -0.21
VPS52-213ENST00000461743 MORC4Q8TE76 937 aa13.74□□□□□ -0.21
VPS52-213ENST00000461743 TCEANC2Q96MN5 208 aa13.74□□□□□ -0.21
VPS52-213ENST00000461743 PIGSQ96S52 555 aa13.74□□□□□ -0.21
VPS52-213ENST00000461743 ABHD16BQ9H3Z7 469 aa13.74□□□□□ -0.21
VPS52-213ENST00000461743 DDX20Q9UHI6 824 aaKnown RBP13.74□□□□□ -0.21
VPS52-213ENST00000461743 OGDHLQ9ULD0 1010 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms