RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 MAP7Q14244 749 aa9.51□□□□□ -0.89
USP54-208ENST00000461520 SOGA3Q5TF21 947 aa9.51□□□□□ -0.89
USP54-208ENST00000461520 GATA6Q92908 595 aa9.51□□□□□ -0.89
USP54-208ENST00000461520 GSX1Q9H4S2 264 aaPredicted RBP9.51□□□□□ -0.89
USP54-208ENST00000461520 TMEM39AQ9NV64 488 aa9.51□□□□□ -0.89
USP54-208ENST00000461520 NIP7Q9Y221 180 aaKnown RBP eCLIP9.51□□□□□ -0.89
USP54-208ENST00000461520 LTBP3Q9NS15 1303 aa9.51□□□□□ -0.89
USP54-208ENST00000461520 CACNA1SQ13698 1873 aa9.51□□□□□ -0.89
USP54-208ENST00000461520 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.5□□□□□ -0.89
USP54-208ENST00000461520 KLRG2A4D1S0 409 aaPredicted RBP9.5□□□□□ -0.89
USP54-208ENST00000461520 ERVV-1B6SEH8 477 aa9.5□□□□□ -0.89
USP54-208ENST00000461520 ZNF862O60290 1169 aa9.5□□□□□ -0.89
USP54-208ENST00000461520 GSTP1P09211 210 aaKnown RBP9.5□□□□□ -0.89
USP54-208ENST00000461520 VEGFAP15692 232 aaPredicted RBP9.5□□□□□ -0.89
USP54-208ENST00000461520 MAPK8P45983 427 aa9.5□□□□□ -0.89
USP54-208ENST00000461520 STK35Q8TDR2 534 aa9.5□□□□□ -0.89
USP54-208ENST00000461520 DICER1Q9UPY3 1922 aaKnown RBP9.5□□□□□ -0.89
USP54-208ENST00000461520 COL11A2P13942 1736 aaPredicted RBP9.5□□□□□ -0.89
USP54-208ENST00000461520 KDM3BQ7LBC6 1761 aa9.5□□□□□ -0.89
USP54-208ENST00000461520 HSPA1AP0DMV8 641 aaKnown RBP9.49□□□□□ -0.89
USP54-208ENST00000461520 HSPA1BP0DMV9 641 aaKnown RBP9.49□□□□□ -0.89
USP54-208ENST00000461520 FOSL1P15407 271 aa9.49□□□□□ -0.89
USP54-208ENST00000461520 NPR1P16066 1061 aa9.49□□□□□ -0.89
USP54-208ENST00000461520 RIPK4P57078 832 aa9.49□□□□□ -0.89
USP54-208ENST00000461520 PPP2R3AQ06190 1150 aa9.49□□□□□ -0.89
USP54-208ENST00000461520 LMOD3Q0VAK6 560 aa9.49□□□□□ -0.89
USP54-208ENST00000461520 HLFQ16534 295 aa9.49□□□□□ -0.89
USP54-208ENST00000461520 THUMPD2Q9BTF0 503 aaKnown RBP9.49□□□□□ -0.89
USP54-208ENST00000461520 TAOK3Q9H2K8 898 aa9.49□□□□□ -0.89
USP54-208ENST00000461520 BABAM1Q9NWV8 329 aa9.49□□□□□ -0.89
USP54-208ENST00000461520 DAGLAQ9Y4D2 1042 aa9.49□□□□□ -0.89
USP54-208ENST00000461520 LAMB4A4D0S4 1761 aa9.49□□□□□ -0.89
USP54-208ENST00000461520 MAP3K15Q6ZN16 1313 aa9.49□□□□□ -0.89
USP54-208ENST00000461520 MYBBP1AQ9BQG0 1328 aaKnown RBP9.49□□□□□ -0.89
USP54-208ENST00000461520 DLG5Q8TDM6 1919 aa9.48□□□□□ -0.89
USP54-208ENST00000461520 TMPRSS2O15393 492 aa9.48□□□□□ -0.89
USP54-208ENST00000461520 WNT11O96014 354 aa9.48□□□□□ -0.89
USP54-208ENST00000461520 XRCC5P13010 732 aaKnown RBP9.48□□□□□ -0.89
USP54-208ENST00000461520 ALDH1B1P30837 517 aa9.48□□□□□ -0.89
USP54-208ENST00000461520 DDX10Q13206 875 aaKnown RBP9.48□□□□□ -0.89
USP54-208ENST00000461520 KIF6Q6ZMV9 814 aa9.48□□□□□ -0.89
USP54-208ENST00000461520 NGEFQ8N5V2 710 aa9.48□□□□□ -0.89
USP54-208ENST00000461520 KCNB2Q92953 911 aa9.48□□□□□ -0.89
USP54-208ENST00000461520 NYXQ9GZU5 481 aa9.48□□□□□ -0.89
USP54-208ENST00000461520 TSPYL4Q9UJ04 414 aa9.48□□□□□ -0.89
USP54-208ENST00000461520 RRP7AQ9Y3A4 280 aaKnown RBP9.48□□□□□ -0.89
USP54-208ENST00000461520 FER1L6Q2WGJ9 1857 aa9.48□□□□□ -0.89
USP54-208ENST00000461520 CYP26A1O43174 497 aa9.47□□□□□ -0.89
USP54-208ENST00000461520 SLFN14P0C7P3 912 aa9.47□□□□□ -0.89
USP54-208ENST00000461520 MYL6BP14649 208 aa9.47□□□□□ -0.89
USP54-208ENST00000461520 TMPOP42166 694 aaKnown RBP9.47□□□□□ -0.89
USP54-208ENST00000461520 KCNA1Q09470 495 aa9.47□□□□□ -0.89
USP54-208ENST00000461520 CCDC93Q567U6 631 aa9.47□□□□□ -0.89
USP54-208ENST00000461520 SEZ6L2Q6UXD5 910 aa9.47□□□□□ -0.89
USP54-208ENST00000461520 PDZD3Q86UT5 571 aa9.47□□□□□ -0.89
USP54-208ENST00000461520 ZSCAN29Q8IWY8 852 aaPredicted RBP9.47□□□□□ -0.89
USP54-208ENST00000461520 METTL22Q9BUU2 404 aaPredicted RBP9.47□□□□□ -0.89
USP54-208ENST00000461520 C1GALT1Q9NS00 363 aa9.47□□□□□ -0.89
USP54-208ENST00000461520 CRIM1Q9NZV1 1036 aa9.47□□□□□ -0.89
USP54-208ENST00000461520 SYNGAP1Q96PV0 1343 aa9.47□□□□□ -0.89
USP54-208ENST00000461520 IBTKQ9P2D0 1353 aaPredicted RBP9.47□□□□□ -0.89
USP54-208ENST00000461520 ARFGEF2Q9Y6D5 1785 aa9.46□□□□□ -0.9
USP54-208ENST00000461520 CPSF6Q16630 551 aaKnown RBP eCLIP9.46□□□□□ -0.9
USP54-208ENST00000461520 MSMPQ1L6U9 139 aa9.46□□□□□ -0.9
USP54-208ENST00000461520 CRY2Q49AN0 593 aa9.46□□□□□ -0.9
USP54-208ENST00000461520 TTLL7Q6ZT98 887 aa9.46□□□□□ -0.9
USP54-208ENST00000461520 ZNF765Q7L2R6 523 aa9.46□□□□□ -0.9
USP54-208ENST00000461520 SULF2Q8IWU5 870 aa9.46□□□□□ -0.9
USP54-208ENST00000461520 RTKN2Q8IZC4 609 aa9.46□□□□□ -0.9
USP54-208ENST00000461520 C3orf58Q8NDZ4 430 aa9.46□□□□□ -0.9
USP54-208ENST00000461520 ASB16Q96NS5 453 aa9.46□□□□□ -0.9
USP54-208ENST00000461520 FANCD2OSQ96PS1 177 aa9.46□□□□□ -0.9
USP54-208ENST00000461520 SLX4Q8IY92 1834 aa9.46□□□□□ -0.9
USP54-208ENST00000461520 ID3Q02535 119 aa9.45□□□□□ -0.9
USP54-208ENST00000461520 FMR1Q06787 632 aaKnown RBP eCLIP9.45□□□□□ -0.9
USP54-208ENST00000461520 KIF4BQ2VIQ3 1234 aa9.45□□□□□ -0.9
USP54-208ENST00000461520 DUSP27Q5VZP5 1158 aa9.45□□□□□ -0.9
USP54-208ENST00000461520 MCTP1Q6DN14 999 aa9.45□□□□□ -0.9
USP54-208ENST00000461520 LRP10Q7Z4F1 713 aa9.45□□□□□ -0.9
USP54-208ENST00000461520 ZNF34Q8IZ26 560 aa9.45□□□□□ -0.9
USP54-208ENST00000461520 RUNDC1Q96C34 613 aa9.45□□□□□ -0.9
USP54-208ENST00000461520 OSBPL7Q9BZF2 842 aa9.45□□□□□ -0.9
USP54-208ENST00000461520 LRRC4CQ9HCJ2 640 aa9.45□□□□□ -0.9
USP54-208ENST00000461520 DISC1Q9NRI5 854 aa9.45□□□□□ -0.9
USP54-208ENST00000461520 KRT82Q9NSB4 513 aa9.45□□□□□ -0.9
USP54-208ENST00000461520 RIC1Q4ADV7 1423 aa9.45□□□□□ -0.9
USP54-208ENST00000461520 EIF2S2P20042 333 aaKnown RBP9.44□□□□□ -0.9
USP54-208ENST00000461520 ARNTP27540 789 aa9.44□□□□□ -0.9
USP54-208ENST00000461520 IRAK1P51617 712 aa9.44□□□□□ -0.9
USP54-208ENST00000461520 WDR43Q15061 677 aaKnown RBP eCLIP9.44□□□□□ -0.9
USP54-208ENST00000461520 PARP10Q53GL7 1025 aa9.44□□□□□ -0.9
USP54-208ENST00000461520 SUSD4Q5VX71 490 aa9.44□□□□□ -0.9
USP54-208ENST00000461520 PPP1R42Q7Z4L9 355 aa9.44□□□□□ -0.9
USP54-208ENST00000461520 PIDD1Q9HB75 910 aa9.44□□□□□ -0.9
USP54-208ENST00000461520 PCDHGC5Q9Y5F6 944 aa9.44□□□□□ -0.9
USP54-208ENST00000461520 UBN2Q6ZU65 1347 aa9.44□□□□□ -0.9
USP54-208ENST00000461520 ABCC12Q96J65 1359 aa9.44□□□□□ -0.9
USP54-208ENST00000461520 IQCA1LA6NCM1 817 aa9.43□□□□□ -0.9
USP54-208ENST00000461520 CHL1O00533 1208 aa9.43□□□□□ -0.9
USP54-208ENST00000461520 DDNO94850 711 aaPredicted RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms