RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 NUTM2EB1AL46 878 aaPredicted RBP13.02□□□□□ -0.32
CPSF3-202ENST00000460593 H7C1D1 291 aa13.02□□□□□ -0.32
CPSF3-202ENST00000460593 PPP1R37O75864 691 aa13.02□□□□□ -0.32
CPSF3-202ENST00000460593 HEXIM1O94992 359 aaKnown RBP13.02□□□□□ -0.32
CPSF3-202ENST00000460593 EIF4A3P38919 411 aaKnown RBP13.02□□□□□ -0.32
CPSF3-202ENST00000460593 SPA17Q15506 151 aa13.02□□□□□ -0.32
CPSF3-202ENST00000460593 NPY5RQ15761 445 aa13.02□□□□□ -0.32
CPSF3-202ENST00000460593 MEA1Q16626 185 aa13.02□□□□□ -0.32
CPSF3-202ENST00000460593 FAM228AQ86W67 206 aa13.02□□□□□ -0.32
CPSF3-202ENST00000460593 PROSER2Q86WR7 435 aaPredicted RBP13.02□□□□□ -0.32
CPSF3-202ENST00000460593 CSGALNACT2Q8N6G5 542 aa13.02□□□□□ -0.32
CPSF3-202ENST00000460593 LRRC15Q8TF66 581 aa13.02□□□□□ -0.32
CPSF3-202ENST00000460593 FERMT2Q96AC1 680 aa13.02□□□□□ -0.32
CPSF3-202ENST00000460593 TTYH3Q9C0H2 523 aa13.02□□□□□ -0.32
CPSF3-202ENST00000460593 EXOC1Q9NV70 894 aa13.02□□□□□ -0.32
CPSF3-202ENST00000460593 ARHGAP20Q9P2F6 1191 aa13.02□□□□□ -0.32
CPSF3-202ENST00000460593 RIPOR2Q9Y4F9 1068 aa13.02□□□□□ -0.32
CPSF3-202ENST00000460593 PCDHA13Q9Y5I0 950 aa13.02□□□□□ -0.32
CPSF3-202ENST00000460593 SOS2Q07890 1332 aaPredicted RBP13.02□□□□□ -0.32
CPSF3-202ENST00000460593 RIC1Q4ADV7 1423 aa13.02□□□□□ -0.32
CPSF3-202ENST00000460593 ARHGAP23Q9P227 1491 aa13.02□□□□□ -0.33
CPSF3-202ENST00000460593 FAM170AA1A519 330 aa13.02□□□□□ -0.33
CPSF3-202ENST00000460593 CHUKO15111 745 aa13.02□□□□□ -0.33
CPSF3-202ENST00000460593 PPP1R12BO60237 982 aaPredicted RBP13.02□□□□□ -0.33
CPSF3-202ENST00000460593 TACC1O75410 805 aa13.02□□□□□ -0.33
CPSF3-202ENST00000460593 MTIF2P46199 727 aaKnown RBP13.02□□□□□ -0.33
CPSF3-202ENST00000460593 ENOX2Q16206 610 aaKnown RBP13.02□□□□□ -0.33
CPSF3-202ENST00000460593 SLC4A8Q2Y0W8 1093 aa13.02□□□□□ -0.33
CPSF3-202ENST00000460593 IQCEQ6IPM2 695 aa13.02□□□□□ -0.33
CPSF3-202ENST00000460593 PURBQ96QR8 312 aaKnown RBP13.02□□□□□ -0.33
CPSF3-202ENST00000460593 VCPKMTQ9H867 229 aa13.02□□□□□ -0.33
CPSF3-202ENST00000460593 DDX20Q9UHI6 824 aaKnown RBP13.02□□□□□ -0.33
CPSF3-202ENST00000460593 PDS5AQ29RF7 1337 aaKnown RBP13.02□□□□□ -0.33
CPSF3-202ENST00000460593 BCL9LQ86UU0 1499 aa13.02□□□□□ -0.33
CPSF3-202ENST00000460593 ANO9A1A5B4 782 aa13.02□□□□□ -0.33
CPSF3-202ENST00000460593 DNM1LO00429 736 aa13.02□□□□□ -0.33
CPSF3-202ENST00000460593 NF2P35240 595 aa13.02□□□□□ -0.33
CPSF3-202ENST00000460593 ATP2C1P98194 919 aaPredicted RBP13.02□□□□□ -0.33
CPSF3-202ENST00000460593 RASSF7Q02833 373 aa13.02□□□□□ -0.33
CPSF3-202ENST00000460593 MTMR8Q96EF0 704 aa13.02□□□□□ -0.33
CPSF3-202ENST00000460593 KRT23Q9C075 422 aa13.02□□□□□ -0.33
CPSF3-202ENST00000460593 SH2D4AQ9H788 454 aa13.02□□□□□ -0.33
CPSF3-202ENST00000460593 NMT2O60551 498 aa13.01□□□□□ -0.33
CPSF3-202ENST00000460593 FTCDO95954 541 aa13.01□□□□□ -0.33
CPSF3-202ENST00000460593 PCCAP05165 728 aaPredicted RBP13.01□□□□□ -0.33
CPSF3-202ENST00000460593 GFPT1Q06210 699 aaPredicted RBP13.01□□□□□ -0.33
CPSF3-202ENST00000460593 NEDD9Q14511 834 aa13.01□□□□□ -0.33
CPSF3-202ENST00000460593 RPAINQ86UA6 219 aa13.01□□□□□ -0.33
CPSF3-202ENST00000460593 CCDC155Q8N6L0 562 aa13.01□□□□□ -0.33
CPSF3-202ENST00000460593 DCAF5Q96JK2 942 aa13.01□□□□□ -0.33
CPSF3-202ENST00000460593 CNOT6LQ96LI5 555 aaKnown RBP13.01□□□□□ -0.33
CPSF3-202ENST00000460593 KRT12Q99456 494 aa13.01□□□□□ -0.33
CPSF3-202ENST00000460593 DUSP9Q99956 384 aaKnown RBP13.01□□□□□ -0.33
CPSF3-202ENST00000460593 SRGNP10124 158 aa13.01□□□□□ -0.33
CPSF3-202ENST00000460593 ALS2CLQ60I27 953 aa13.01□□□□□ -0.33
CPSF3-202ENST00000460593 IQCA1Q86XH1 822 aa13.01□□□□□ -0.33
CPSF3-202ENST00000460593 DNAAF5Q86Y56 855 aa13.01□□□□□ -0.33
CPSF3-202ENST00000460593 KLHL7Q8IXQ5 586 aa13.01□□□□□ -0.33
CPSF3-202ENST00000460593 NOC4LQ9BVI4 516 aaKnown RBP13.01□□□□□ -0.33
CPSF3-202ENST00000460593 AKR1B10O60218 316 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 NEBLO76041 1014 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 EPB41P11171 864 aaKnown RBP13□□□□□ -0.33
CPSF3-202ENST00000460593 FCER1AP12319 257 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 KIF11P52732 1056 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 RASGRF1Q13972 1273 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 NAALADL2Q58DX5 795 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 ANKRD40Q6AI12 368 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 EMBQ6PCB8 327 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 KDM7AQ6ZMT4 941 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 DDX42Q86XP3 938 aaKnown RBP eCLIP13□□□□□ -0.33
CPSF3-202ENST00000460593 IQCKQ8N0W5 287 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 TRIM58Q8NG06 486 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 CASKIN2Q8WXE0 1202 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 TLR10Q9BXR5 811 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 LRRC4CQ9HCJ2 640 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 MTMR7Q9Y216 660 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 RASSF9O75901 435 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 MDH1P40925 334 aaKnown RBP13□□□□□ -0.33
CPSF3-202ENST00000460593 DNM2P50570 870 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 ZBED6P86452 979 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 DDR1Q08345 913 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 PREPLQ4J6C6 727 aaPredicted RBP13□□□□□ -0.33
CPSF3-202ENST00000460593 CCDC178Q5BJE1 867 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 FNBP4Q8N3X1 1017 aaPredicted RBP13□□□□□ -0.33
CPSF3-202ENST00000460593 ENAHQ8N8S7 591 aaPredicted RBP13□□□□□ -0.33
CPSF3-202ENST00000460593 MIEF2Q96C03 454 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 TBC1D31Q96DN5 1066 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 CYFIP2Q96F07 1278 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 OSBPL7Q9BZF2 842 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 MMRN2Q9H8L6 949 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 PLAAQ9Y263 795 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 A0A1W2PQC6 194 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 CCDC189A1A4V9 331 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 XBP1P17861 261 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 CDC25CP30307 473 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 NLRP5P59047 1200 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 TTI2Q6NXR4 508 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 RNF26Q9BY78 433 aaPredicted RBP13□□□□□ -0.33
CPSF3-202ENST00000460593 GOLPH3Q9H4A6 298 aa13□□□□□ -0.33
CPSF3-202ENST00000460593 CNNM2Q9H8M5 875 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms